I am trying to compile amber11 on ubuntu 10.04. Compilation of serial
amber has gone without any errors but, when I try to compile with cuda
support I get the following error lines. Any idea of what might be
happening. The version of cudatoolkit I am using is 4.0. The nvidia
driver is the latest 275 provided by nvidia.
In case you need any extra information, please let me know.
make -C ./cuda
make[3]: Entering directory `/home/zotac/Downloads/amber11/src/pmemd/src/cuda'
cpp -traditional -P -DDIRFRC_EFS -DDIRFRC_COMTRANS -DDIRFRC_NOVEC
-DFFTLOADBAL_2PROC -DPUBFFT -DCUDA cuda_info.fpp cuda_info.f90
gfortran -O3 -mtune=generic -DCUDA -I/usr/local/cuda/include -IB40C
-IB40C/KernelCommon -c cuda_info.f90
gcc -O3 -mtune=generic -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE
-DCUDA -I/usr/local/cuda/include -IB40C -IB40C/KernelCommon -c gpu.cpp
gcc -O3 -mtune=generic -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE
-DCUDA -I/usr/local/cuda/include -IB40C -IB40C/KernelCommon -c
gputypes.cpp
/usr/local/cuda/bin/nvcc -use_fast_math -O3 -gencode
arch=compute_13,code=sm_13 -gencode arch=compute_20,code=sm_20 -DCUDA
-I/usr/local/cuda/include -IB40C -IB40C/KernelCommon -c
kForcesUpdate.cu
kU.h(149): error: expected a declaration
kU.h(189): error: identifier "pos" is undefined
kU.h(201): error: identifier "invMass" is undefined
kU.h(201): error: identifier "dtx" is undefined
kU.h(209): error: this declaration has no storage class or type specifier
kU.h(209): error: variable "cSim" has already been defined
kU.h(209): error: expected a ";"
kU.h(210): error: this declaration has no storage class or type specifier
kU.h(210): error: variable "cSim" has already been defined
kU.h(210): error: expected a ";"
kU.h(211): error: this declaration has no storage class or type specifier
kU.h(211): error: variable "cSim" has already been defined
kU.h(211): error: expected a ";"
kU.h(220): error: this declaration has no storage class or type specifier
kU.h(220): error: variable "velX" has already been defined
kU.h(220): error: expected a ";"
kU.h(221): error: this declaration has no storage class or type specifier
kU.h(221): error: variable "velY" has already been defined
kU.h(221): error: expected a ";"
kU.h(222): error: this declaration has no storage class or type specifier
kU.h(222): error: variable "velZ" has already been defined
kU.h(222): error: expected a ";"
kU.h(233): error: this declaration has no storage class or type specifier
kU.h(233): error: variable "cSim" has already been defined
kU.h(233): error: expected a ";"
kU.h(234): error: this declaration has no storage class or type specifier
kU.h(234): error: variable "cSim" has already been defined
kU.h(234): error: expected a ";"
kU.h(235): error: this declaration has no storage class or type specifier
kU.h(235): error: variable "cSim" has already been defined
kU.h(235): error: expected a ";"
kU.h(244): error: this declaration has no storage class or type specifier
kU.h(244): error: variable "cSim" has already been defined
kU.h(244): error: expected a ";"
kU.h(245): error: this declaration has no storage class or type specifier
kU.h(245): error: variable "cSim" has already been defined
kU.h(245): error: expected a ";"
kU.h(246): error: this declaration has no storage class or type specifier
kU.h(246): error: variable "cSim" has already been defined
kU.h(246): error: expected a ";"
kU.h(248): error: identifier "atomX" is undefined
kU.h(249): error: identifier "atomY" is undefined
kU.h(250): error: identifier "atomZ" is undefined
kU.h(252): error: this declaration has no storage class or type specifier
kU.h(252): error: variable "xy" has already been defined
kU.h(252): error: expected a ";"
kU.h(253): error: this declaration has no storage class or type specifier
kU.h(253): error: variable "xy" has already been defined
kU.h(253): error: expected a ";"
kU.h(259): error: this declaration has no storage class or type specifier
kU.h(259): error: variable "cSim" has already been defined
kU.h(259): error: expected a ";"
kU.h(260): error: this declaration has no storage class or type specifier
kU.h(260): error: variable "cSim" has already been defined
kU.h(260): error: expected a ";"
kU.h(261): error: this declaration has no storage class or type specifier
kU.h(261): error: variable "cSim" has already been defined
kU.h(261): error: expected a ";"
kU.h(263): error: this declaration has no storage class or type specifier
kU.h(263): error: variable "cSim" has already been defined
kU.h(263): error: expected a ";"
kU.h(264): error: this declaration has no storage class or type specifier
kU.h(264): error: variable "cSim" has already been defined
kU.h(264): error: expected a ";"
kU.h(265): error: this declaration has no storage class or type specifier
kU.h(265): error: expected a ";"
kU.h(266): error: expected a declaration
kU.h(326): warning: parsing restarts here after previous syntax error
kU.h(327): error: variable "forceZ" has already been defined
kU.h(328): error: variable "velX" has already been defined
kU.h(329): error: variable "velY" has already been defined
kU.h(330): error: variable "velZ" has already been defined
kU.h(338): error: variable "wfac" has already been defined
kU.h(346): error: this declaration has no storage class or type specifier
kU.h(346): error: variable "cSim" has already been defined
kU.h(346): error: expected a ";"
kU.h(347): error: this declaration has no storage class or type specifier
kU.h(347): error: variable "cSim" has already been defined
kU.h(347): error: expected a ";"
kU.h(348): error: this declaration has no storage class or type specifier
kU.h(348): error: variable "cSim" has already been defined
kU.h(348): error: expected a ";"
kU.h(357): error: this declaration has no storage class or type specifier
kU.h(357): error: variable "velX" has already been defined
kU.h(357): error: expected a ";"
kU.h(358): error: this declaration has no storage class or type specifier
kU.h(358): error: variable "velY" has already been defined
kU.h(358): error: expected a ";"
kU.h(359): error: this declaration has no storage class or type specifier
kU.h(359): error: variable "velZ" has already been defined
kU.h(359): error: expected a ";"
kU.h(370): error: this declaration has no storage class or type specifier
kU.h(370): error: variable "cSim" has already been defined
kU.h(370): error: expected a ";"
kU.h(371): error: this declaration has no storage class or type specifier
kU.h(371): error: variable "cSim" has already been defined
kU.h(371): error: expected a ";"
kU.h(372): error: this declaration has no storage class or type specifier
kU.h(372): error: variable "cSim" has already been defined
kU.h(372): error: expected a ";"
kU.h(381): error: this declaration has no storage class or type specifier
Error limit reached.
100 errors detected in the compilation of
"/tmp/tmpxft_00003b14_00000000-6_kForcesUpdate.compute_13.cpp1.ii".
Compilation terminated.
make[3]: *** [kForcesUpdate.o] Error 4
make[3]: Leaving directory `/home/zotac/Downloads/amber11/src/pmemd/src/cuda'
make[2]: *** [-L/usr/local/cuda/lib64] Error 2
make[2]: Leaving directory `/home/zotac/Downloads/amber11/src/pmemd/src'
make[1]: *** [cuda] Error 2
make[1]: Leaving directory `/home/zotac/Downloads/amber11/src/pmemd'
make: *** [cuda] Error 2
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Received on Fri Jul 22 2011 - 15:00:02 PDT
