[AMBER] problem with addIons in tleap

From: Wei Chen <cwbluesky.gmail.com>
Date: Thu, 21 Jul 2011 22:22:36 -0700

Hi, All,

After I solvated my protein, I used "addIons" to add ions to the
system to reach certain ion concentration. I found that some ions were
placed outside of the water box. Is this normal? When I used AMBER8
long time ago, this did not happen. I was wondering if this is
something with the new version of AmberTools.


Wei Chen

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Received on Thu Jul 21 2011 - 22:30:02 PDT
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