Re: [AMBER] How to use nonlin option of APBS in

From: Dwight McGee <>
Date: Tue, 19 Jul 2011 13:31:32 -0400


 You don't have to modify the script to set nonlin=1. You can use the option
"-use-mdins" see the manual for details. Hope that helps

On Tue, Jul 19, 2011 at 1:03 PM, Wei Huang <> wrote:

> Dear Amber users,
> It is not clear to me how I can set the parameter in the input file for
> to calculate the pb part using nonlinear PB equation via APBS (set
> nonlin=1 in _MMPBSA_pb.mdin file). Could you let me know how I can achieve
> that? If it is needed to modified the script, could you point out which part
> of the script should I change? Thanks a lot!
> Best,
> Wei
> _______________________________________________
> AMBER mailing list

T. Dwight McGee Jr.
Quantum Theory Project
University of Florida
Graduate Student
"Problems cannot be solved at the same level of awareness that created
                Albert Einstein
AMBER mailing list
Received on Tue Jul 19 2011 - 11:00:04 PDT
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