Hello!
You can use the parameters used by Hermann, T and Heumann, H. RNA,
1995, 1, 1009-1017
r_{vdW}=0.96
\epsilon=0.01
I used those parameters for copper complexes and work acording to
X-ray observations. Remember to check you simulated copper structure
with some experimental data.
Good luck!
Rodrigo.
2011/7/15, caobb0214 <caobb0214.163.com>:
> Dear Sir,
> There is a Cu2+in my molecule and I need its nonbond parameter (van der
> Waals radius and well depth) in amber 9. can anyone help
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Enviado desde mi dispositivo móvil
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Received on Fri Jul 15 2011 - 19:00:02 PDT
