Re: [AMBER] Antechamber trouble with COA-acyl chain

From: intra\\sa175950 <stephane.abel.cea.fr>
Date: Wed, 13 Jul 2011 17:30:20 +0200

Hi Erin,

Your pdb file was no in the PDB format (i.e. all the fields were not in the
good place). So I have reformatted it.

Now your molecule is correct in RASMOL, VMD,...

HTH

Stephane


-----Message d'origine-----
De : Erin Kelly [mailto:erkelly4572.gmail.com]
Envoyé : mercredi 13 juillet 2011 16:54
À : AMBER Mailing List
Objet : Re: [AMBER] Antechamber trouble with COA-acyl chain

Dr. Case,

I just noticed that the pdb coh1-1.pdb is flawed somehow, probably because
we added the numbers, so I'm going to send you the old coh1.pdb as well.
I'll try to figure out why the coh1-1.pdb was unsuccessful.

Thanks,

Erin

On Wed, Jul 13, 2011 at 9:28 AM, Erin Kelly <erkelly4572.gmail.com> wrote:

> Of course.
>
> Thanks,
> Erin
>
>
> On Wed, Jul 13, 2011 at 7:15 AM, David A Case
<case.biomaps.rutgers.edu>wrote:
>
>> On Tue, Jul 12, 2011, Erin Kelly wrote:
>> > Ok, so we edited the PDB to add unique atom names and changed the UNK.
>>
>> Can you post the final pdb file? (Note that the archive of old messages
>> is
>> always several days behind, so I can't try to reproduce the problem, as I
>> no
>> longer have your input file, and it is not yet in the archive.)
>>
>> ...thx...dac
>>
>>
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>>
>
>


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Received on Wed Jul 13 2011 - 09:00:03 PDT
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