Dear All,
Can anyone help with this error called glibc while running mm_pbsa.pl for
calculation of molecular mechanics energy .
I saw my log file where it stops with the first coordinate of the receptor .
Visualizaition in VMD show a distortion (one atom is pulled) . What could be
the probable reason , I checked all my input file and they seem to be
alright .
*** glibc detected *** /usr/local/apps/amber10/exe/sander: free(): invalid
next
size (normal): 0x000000001c405b20 ***
======= Backtrace: =========
/lib64/libc.so.6[0x3786e722ef]
/lib64/libc.so.6(cfree+0x4b)[0x3786e7273b]
/usr/local/apps/amber10/exe/sander[0xad85ad]
/usr/local/apps/amber10/exe/sander[0x598683]
/usr/local/apps/amber10/exe/sander[0x4de600]
/usr/local/apps/amber10/exe/sander[0x4aae97]
/usr/local/apps/amber10/exe/sander[0x4a9da8]
/usr/local/apps/amber10/exe/sander[0x404b02]
/lib64/libc.so.6(__libc_start_main+0xf4)[0x3786e1d994]
/usr/local/apps/amber10/exe/sander[0x404a29]
======= Memory map: ========
00400000-00c20000 r-xp 00000000 00:17 49137438
/usr/lo
cal/apps/amber10/bin/sander
00e20000-00e8a000 rwxp 00820000 00:17 49137438
/usr/lo
cal/apps/amber10/bin/sander
00e8a000-036a0000 rwxp 00e8a000 00:00 0
1c402000-1c642000 rwxp 1c402000 00:00 0
Thank you in advance.
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Received on Tue Jul 05 2011 - 21:30:03 PDT
