Hi Fabrício,
I always had the same error during the compilation of Cuda.MPI, but I never saw similar topic here. I defined MPI_HOME, but this not helps.. something in the paths is still wrong. Probably Ross will give us some permanent solution.
Just copy and paste the corresponding missing files (mpi.h and so on) from your MPI installation to the installation Amber cuda folder :)
Not nice but work:)
All the best,
Filip
--- On Sat, 7/2/11, Fabrício Bracht <bracht.iq.ufrj.br> wrote:
> From: Fabrício Bracht <bracht.iq.ufrj.br>
> Subject: [AMBER] MPI cuda compilation error
> To: "AMBER Mailing List" <AMBER.ambermd.org>
> Date: Saturday, July 2, 2011, 3:03 AM
> Hello. When trying to compile
> pmemd.cuda.MPI with Amber11 and
> Ambertools 1.5 in ubuntu 10.04, the make command finishes
> with the
> following error.
>
> In file included from gpu.h:15,
>
> from kForcesUpdate.cu:14:
> gputypes.h:24:17: error: mpi.h: No such file or directory
> make[3]: *** [kForcesUpdate.o] Error 1
> make[3]: Leaving directory
> `/home/fabricio/amber11/src/pmemd/src/cuda'
> make[2]: *** [-L/usr/local/cuda/lib64] Error 2
> make[2]: Leaving directory
> `/home/fabricio/amber11/src/pmemd/src'
> make[1]: *** [cuda_parallel] Error 2
> make[1]: Leaving directory
> `/home/fabricio/amber11/src/pmemd'
> make: *** [cuda_parallel] Error 2
>
> The configure command was - ./configure -mpi -cuda
> -nobintraj -noX11 gnu
> And the make command was - ./make cuda_parallel
>
> How can I solve this?
> Thank you
> Fabrício Bracht
>
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Received on Sat Jul 02 2011 - 03:00:03 PDT
