Re: [AMBER] Parallel compilation of AmberTools1.5 failed

From: Xioling Chuang <>
Date: Wed, 15 Jun 2011 07:56:03 +0200

Dear Jason,
Installation failed at another step, see message below. Any suggestion please.
===============...mpicc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DMPI -o clusterLib.o clusterLib.cmpicc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DMPI \ -o ptraj.MPI main.o rdparm.o dispatch.o help.o utility.o second.o io.o trajectory.o netcdf_ptraj.o parallel_ptraj.o evec.o torsion.o mask.o rms.o display.o interface.o energy.o experimental.o ptraj.o actions.o analyze.o thermo.o pubfft.o cluster.o clusterLib.o /softwares/amber11/lib/libpdb.a /softwares/amber11/lib/arpack.a /softwares/amber11/lib/lapack.a /softwares/amber11/lib/blas.a -L/softwares/intel/fc/10.1.015/lib/ -lifport -lifcore -lsvml /softwares/amber11/lib/libpnetcdf.a -lm/softwares/intel/fc/10.1.015/lib// undefined reference to `dlsym'collect2: ld returned 1 exit statusmake[1]: *** [ptraj.MPI] Error 1make[1]: Leaving directory `/softwares/amber11/AmberTools/src/ptraj'make: *** [parallel] Error 2
> Get rid of the -axSTPW and -ip from your config.h file and retry.
> HTH,
> Jason

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Received on Tue Jun 14 2011 - 23:00:04 PDT
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