There is a very similar command to "loadpdb" it is called "loadpdb" :)
I don't think it reads in the charges from the pqr, but it should have the
correct atom naming so that when you load the same parm set that you put in
for pdb2pqr it should have the same charges.
Give it a try!
-Dan
On Thu, Jun 9, 2011 at 11:35 AM, Azat Mukhametov <azatccb.gmail.com> wrote:
> Hi All,
> Does anybody know, is it possible to use PQR file produced by PDB2PQR to
> prepare structures for MD simulation?
> Is here any command like "loadpdb", but for PQR file?
> Or any other way to perform conversion?
>
> Thanks!
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Dr. Daniel J. Sindhikara
Institute for Molecular Science
E-mail: sindhikara.gmail.com
Website: http://sites.google.com/site/dansindhikara/
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Received on Wed Jun 08 2011 - 20:00:03 PDT
