[AMBER] rmsd calculation

From: Xiao Chen <chen.xiao.po.gmail.com>
Date: Tue, 7 Jun 2011 14:33:57 +0530

Hi All,

How can we calculate
     a)rmsd of each residue (backbone) at each frame in the simulation (not
r.m.s.f).
     b)rmsd of only the side-chain at each frame in the simulation .

Thanks,

Po
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Received on Tue Jun 07 2011 - 02:30:02 PDT