On Jun 3, 2011, at 11:16 AM, Brian Radak <radak004.umn.edu> wrote:
>
> O1P --> OP1
> O2P --> OP2
ambpdb is trying to make atom names compatible with pdb version 3, so that prmtop files created before ff10 for nucleic acids would have the proper names.
You can turn off the name conversion with the -aatm flag, as I recall.
...dac
>
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Received on Fri Jun 03 2011 - 10:00:03 PDT
