[AMBER] Error message for cpptraj

From: kurisaki <kurisaki.ncube.human.nagoya-u.ac.jp>
Date: Wed, 1 Jun 2011 14:01:51 +0900

Dear Amber developers,


Thank you for usual support.


I would like to ask an error message below, which I encountered in running
cpptraj module in AmberTools 1.5.


Warning: Unusual number of bonds for atom 4725 (0), type Na.



This statement could appear in what situation?


I used a prmtop file consists of 2 Protein chains, 4 Cl- and 1 Na+.

The ptraj can be worked with the same prmtop file but Cpptraj was not.


Some cpptraj commands can be useful for my study and

I really use the cpptraj.


Thank you for kind support.


                                     Ikuo Kurisaki

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Received on Tue May 31 2011 - 22:30:04 PDT
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