Amber Archive Jun 2011 by thread
- Re: [AMBER] AMBER11 Installation on FEDORA 15 Daniel Roe (Tue May 31 2011 - 21:14:07 PDT)
- [AMBER] Error message for cpptraj kurisaki (Tue May 31 2011 - 22:01:51 PDT)
- [AMBER] Zotac GTX 580 3 GB german.erlenkamp.pharmazie.uni-halle.de (Wed Jun 01 2011 - 01:24:09 PDT)
- Re: [AMBER] Where to send patches? Ake Sandgren (Wed Jun 01 2011 - 01:45:29 PDT)
- [AMBER] Binary reported data were wrong.. Lorenzo Gontrani (Wed Jun 01 2011 - 02:48:11 PDT)
- [AMBER] Sorry again..this is right Lorenzo Gontrani (Wed Jun 01 2011 - 02:52:43 PDT)
- [AMBER] NMR restraints file format tong Zhu (Wed Jun 01 2011 - 03:07:57 PDT)
- [AMBER] Question about the influence of trajectory format (ioutfm) on results - part 2 Lorenzo Gontrani (Wed Jun 01 2011 - 03:11:53 PDT)
- Re: [AMBER] AMBER David A Case (Wed Jun 01 2011 - 05:49:23 PDT)
- [AMBER] pH-dependent folding simulation George Tzotzos (Wed Jun 01 2011 - 09:32:50 PDT)
- Re: [AMBER] RAM requirements Dmitry Osolodkin (Wed Jun 01 2011 - 09:36:07 PDT)
- [AMBER] Bug - AMBER Atom type - iodine Mahmoud A. A. Ibrahim (Wed Jun 01 2011 - 10:30:11 PDT)
- [AMBER] CHAMBER and making PDB files Seibold, Stephen (Wed Jun 01 2011 - 10:34:55 PDT)
- [AMBER] Delete Solvatebox Julian Zachmann (Wed Jun 01 2011 - 12:12:12 PDT)
- [AMBER] residual dipolar coupling restraints Brendan Duggan (Wed Jun 01 2011 - 13:14:15 PDT)
- [AMBER] sander terminates abruptly Praapti Jayaswal (Wed Jun 01 2011 - 21:01:36 PDT)
- [AMBER] Energy Decomposition Error using Perl Script (#RECMAP + #LIGMAP != #COMPRI) Hirdesh Kumar (Thu Jun 02 2011 - 02:58:46 PDT)
- [AMBER] AmberTools 1.5 installation problem Siavoush Dastmalchi (Thu Jun 02 2011 - 04:22:42 PDT)
- [AMBER] ptraj: cluster George Tzotzos (Thu Jun 02 2011 - 05:45:27 PDT)
- [AMBER] Force fields for DNA, what to choose? Anna Reymer (Thu Jun 02 2011 - 07:26:31 PDT)
- [AMBER] simulation of small molecule with organic solvent and water Senthil Natesan (Thu Jun 02 2011 - 08:03:35 PDT)
- [AMBER] mmpbsa-bad atom (metal ions) 付婷 (Thu Jun 02 2011 - 17:59:26 PDT)
- [AMBER] production run duration Xiao Chen (Thu Jun 02 2011 - 21:46:54 PDT)
- [AMBER] Choosing the number of replicas in NEB Chris Bryant (Fri Jun 03 2011 - 07:58:18 PDT)
- [AMBER] concerted effect of the backbone movement abhay.strubi.ox.ac.uk (Fri Jun 03 2011 - 08:11:03 PDT)
- [AMBER] unexpected behavior of ambpdb Brian Radak (Fri Jun 03 2011 - 08:16:19 PDT)
- [AMBER] ptaj: contacts George Tzotzos (Fri Jun 03 2011 - 08:31:53 PDT)
- [AMBER] RED Seibold, Stephen (Fri Jun 03 2011 - 14:11:43 PDT)
- [AMBER] Problem related with the Ptraj Sindrila Dutta banik (Sat Jun 04 2011 - 04:14:08 PDT)
- [AMBER] Simulating a periodic System about Molecular Crystal hanlu0366 (Sun Jun 05 2011 - 06:27:07 PDT)
- [AMBER] PMEMD does not support intermolecular PRFs Maura Catherine Mooney (Sun Jun 05 2011 - 08:44:43 PDT)
- [AMBER] prep files ATP-MG++ and for phosphorylated threonine Nitu Bansal (Sun Jun 05 2011 - 13:12:37 PDT)
- [AMBER] Negative value of SASA calculated by surf command in cpptraj kurisaki (Sun Jun 05 2011 - 20:30:54 PDT)
- [AMBER] Problem with make test.serial Amber 9 TH Chew (Mon Jun 06 2011 - 03:17:09 PDT)
- [AMBER] Calculating energies Daniel Schaal (Mon Jun 06 2011 - 04:11:19 PDT)
- [AMBER] Ligand Minimization with Simulated Annealing Julian Zachmann (Mon Jun 06 2011 - 07:24:51 PDT)
- [AMBER] energy decomposition with mmpbsa.py victor ma (Mon Jun 06 2011 - 10:07:29 PDT)
- [AMBER] Units of SMD Simulation Output Joseph Seemiller (Mon Jun 06 2011 - 13:16:44 PDT)
- [AMBER] ptraj error with *** glibc detected *** ptraj: free(): invalid next size (normal) Bongkeun Kim (Mon Jun 06 2011 - 13:30:03 PDT)
- [AMBER] rmsd calculation Xiao Chen (Tue Jun 07 2011 - 02:03:57 PDT)
- [AMBER] Loadin AMBER9 in linux souvik sur (Tue Jun 07 2011 - 03:08:00 PDT)
- [AMBER] regarding pi-pi interaction Hirdesh Kumar (Tue Jun 07 2011 - 03:19:32 PDT)
- [AMBER] PTRAJ clustering Sander B. (Tue Jun 07 2011 - 07:40:12 PDT)
- [AMBER] MMPBSA: general question George Tzotzos (Tue Jun 07 2011 - 09:51:12 PDT)
- [AMBER] Normal Mode Analysis David Cantu (Tue Jun 07 2011 - 16:08:48 PDT)
- [AMBER] Installation problem Shesh Nath (Tue Jun 07 2011 - 23:42:46 PDT)
- [AMBER] non-bonded cutoff in the case of REMD in explicit solvent mish (Wed Jun 08 2011 - 01:20:10 PDT)
- [AMBER] Does anyone know a screening program of hardware validity for GeForce GTX board? Hiromichi Tsurui (Wed Jun 08 2011 - 03:48:01 PDT)
- [AMBER] sander.mpi with amoeba? r smith (Wed Jun 08 2011 - 07:19:07 PDT)
- [AMBER] water test with pmemd.amba r smith (Wed Jun 08 2011 - 08:26:38 PDT)
- [AMBER] bin size for rdf subrata paul (Wed Jun 08 2011 - 09:23:05 PDT)
- [AMBER] problem about entropy calculation caobb0214 (Wed Jun 08 2011 - 17:21:36 PDT)
- [AMBER] Using PQR files produced by PDB2PQR as input for tleap/xleap Azat Mukhametov (Wed Jun 08 2011 - 19:35:42 PDT)
- [AMBER] Problem related to teh residue template and add ion Sindrila Dutta banik (Thu Jun 09 2011 - 03:47:16 PDT)
- [AMBER] problems ahout simulating a molecular crystal hanlu0366 (Thu Jun 09 2011 - 04:51:45 PDT)
- [AMBER] Problem related to the residue template and add ion Sindrila Dutta banik (Thu Jun 09 2011 - 05:27:54 PDT)
- [AMBER] re-image Bruno Rodrigues (Thu Jun 09 2011 - 06:28:19 PDT)
- [AMBER] Antechamber Caterina Bianchi (Thu Jun 09 2011 - 07:09:57 PDT)
- [AMBER] SANDER BOMB Xioling Chuang (Thu Jun 09 2011 - 07:41:29 PDT)
- [AMBER] CPPTRAJ- segmentation fault Xiao Chen (Thu Jun 09 2011 - 21:00:17 PDT)
- [AMBER] ANTECHAMBER/RESP Caterina Bianchi (Fri Jun 10 2011 - 03:02:24 PDT)
- [AMBER] Amber 10: Compilation error Kshatresh Dutta Dubey (Fri Jun 10 2011 - 04:51:34 PDT)
- [AMBER] Free energy perturbation of Ca2+ ion Sergey Samsonov (Fri Jun 10 2011 - 06:50:37 PDT)
- [AMBER] Question about INTRAmolecular restraint Lorenzo Gontrani (Fri Jun 10 2011 - 09:52:29 PDT)
- [AMBER] Problems Compiling Amber10 Gordon Freeman (Fri Jun 10 2011 - 10:02:52 PDT)
- [AMBER] running a MD with a innert gas Matias Factorovich (Fri Jun 10 2011 - 10:08:32 PDT)
- [AMBER] Issues with Generating Prep File from Gaussian output using Antechamber Vivek Shankar Bharadwaj (Fri Jun 10 2011 - 13:44:22 PDT)
- [AMBER] Amber Compilation error Kshatresh Dutta Dubey (Fri Jun 10 2011 - 22:38:53 PDT)
- [AMBER] Solution for frozen atom type hari krishna (Sat Jun 11 2011 - 02:07:39 PDT)
- [AMBER] format error from mmpbsa.py Zhi Wang (Sat Jun 11 2011 - 14:01:38 PDT)
- [AMBER] Amber 11 and AmberTools 1.5 on Debian 6 Siavoush Dastmalchi (Sun Jun 12 2011 - 04:10:24 PDT)
- [AMBER] About "Must have more residues than processors" Bin Wu (Sun Jun 12 2011 - 13:35:04 PDT)
- [AMBER] High-temperature output in REMD tdo.chem.ucsb.edu (Sun Jun 12 2011 - 18:16:44 PDT)
- [AMBER] noesy and dip Program error when testing Amber11 Parallel Alison Lynton (Mon Jun 13 2011 - 00:53:16 PDT)
- [AMBER] keyword ref Xiao Chen (Mon Jun 13 2011 - 03:39:23 PDT)
- [AMBER] Can Amoeba force field be used with divalent ions? Xioling Chuang (Mon Jun 13 2011 - 04:02:05 PDT)
- [AMBER] water test with pmemd.amba r smith (Mon Jun 13 2011 - 07:33:27 PDT)
- [AMBER] Restart problems with pmemd.cuda Fabrício Bracht (Mon Jun 13 2011 - 08:42:04 PDT)
- [AMBER] Problem related to the residue template and add ion Sindrila Dutta banik (Mon Jun 13 2011 - 09:01:36 PDT)
- [AMBER] Antechamber Error David Cantu (Mon Jun 13 2011 - 14:09:42 PDT)
- [AMBER] Interpreting the distance covariance matrix Sajeewa Pemasinghe (Mon Jun 13 2011 - 15:48:39 PDT)
- [AMBER] Compile Python error Xioling Chuang (Mon Jun 13 2011 - 19:21:04 PDT)
- [AMBER] PDB survey Eliac Brown (Mon Jun 13 2011 - 20:56:48 PDT)
- [AMBER] secstruct analysis fatahiya (Tue Jun 14 2011 - 00:12:52 PDT)
- Re: [AMBER] question about amber Ross Walker (Tue Jun 14 2011 - 01:33:08 PDT)
- [AMBER] loadPdbUsingSeq command Antonija Tomić (Tue Jun 14 2011 - 02:26:00 PDT)
- [AMBER] Hairpin Shesh Nath (Tue Jun 14 2011 - 02:42:46 PDT)
- [AMBER] Error While running RED III.4 hari krishna (Tue Jun 14 2011 - 03:02:41 PDT)
- [AMBER] Parallel compilation of AmberTools1.5 failed Xioling Chuang (Tue Jun 14 2011 - 20:24:28 PDT)
- [AMBER] Problem related to the load PDB Sindrila Dutta banik (Tue Jun 14 2011 - 22:47:57 PDT)
- [AMBER] Problem related to the load PDB Sindrila Dutta banik (Tue Jun 14 2011 - 22:57:18 PDT)
- [AMBER] Problem related to Missing amino acids in pdb Sindrila Dutta banik (Tue Jun 14 2011 - 23:06:31 PDT)
- [AMBER] hydration number subrata paul (Tue Jun 14 2011 - 23:38:26 PDT)
- [AMBER] Bfactor calculation in cpptraj Xiao Chen (Wed Jun 15 2011 - 00:28:37 PDT)
- [AMBER] how to interprete x.ss file fatahiya (Wed Jun 15 2011 - 01:27:38 PDT)
- [AMBER] missing residue Jyotsna Bhat (Wed Jun 15 2011 - 01:34:52 PDT)
- [AMBER] Restraint Minimization Pooja Khurana (Wed Jun 15 2011 - 03:01:19 PDT)
- [AMBER] restraint simulation abhay.strubi.ox.ac.uk (Wed Jun 15 2011 - 03:51:29 PDT)
- [AMBER] Installation Problem : Amber 9 souvik sur (Wed Jun 15 2011 - 05:41:21 PDT)
- [AMBER] Amber Shesh Nath (Wed Jun 15 2011 - 05:34:36 PDT)
- [AMBER] ptraj: Could not find target 300.000000 in any of the replica trajectories tdo.chem.ucsb.edu (Wed Jun 15 2011 - 06:49:23 PDT)
- [AMBER] System temperature Fernando Martín García (Wed Jun 15 2011 - 07:31:12 PDT)
- [AMBER] warning in ptraj check coordinates() Sajeewa Pemasinghe (Wed Jun 15 2011 - 09:17:21 PDT)
- [AMBER] MPI_ABORT errorcode 1 for sander.MPI Erin Kelly (Wed Jun 15 2011 - 11:44:37 PDT)
- [AMBER] Methane with no surface area? Christoph Klein (Wed Jun 15 2011 - 12:45:39 PDT)
- [AMBER] MPI_ABORT errorcode 1 sander Erin Kelly (Wed Jun 15 2011 - 12:58:40 PDT)
- [AMBER] ptraj, alignment, and rmsd Michael Zimmermann (Wed Jun 15 2011 - 13:13:35 PDT)
- [AMBER] About difference between Sander and Pmemd Bin Wu (Wed Jun 15 2011 - 19:54:38 PDT)
- [AMBER] Installation of Amber 9 : Problem souvik sur (Wed Jun 15 2011 - 23:15:36 PDT)
- [AMBER] Gromacs to Amber trajectory Raja Pandian (Thu Jun 16 2011 - 07:20:12 PDT)
- [AMBER] Residue numbering Daniel Aiello (Thu Jun 16 2011 - 10:42:43 PDT)
- [AMBER] RDF Alexander Drozdetski (Thu Jun 16 2011 - 11:56:39 PDT)
- [AMBER] velocity auto correlation function; resident time; MD (Thu Jun 16 2011 - 13:00:23 PDT)
- [AMBER] amber10 output Qian Wang (Thu Jun 16 2011 - 13:42:09 PDT)
- [AMBER] Nucleic residues with methylphosphonates Alexander Drozdetski (Thu Jun 16 2011 - 13:49:33 PDT)
- [AMBER] velocity auto correlation function; resident time; MD (Thu Jun 16 2011 - 21:38:57 PDT)
- [AMBER] sleap never worked anymore since AT 1.2 Alan (Fri Jun 17 2011 - 01:45:01 PDT)
- [AMBER] small inconsistencies in parm99.dat and parm94.dat Thomas Gaillard (Fri Jun 17 2011 - 02:43:23 PDT)
- [AMBER] Energy decomposition Guenegou, Guillaume [ORDFR] (Fri Jun 17 2011 - 06:25:56 PDT)
- [AMBER] algorithm for rms Ada Sedova (Fri Jun 17 2011 - 07:36:27 PDT)
- [AMBER] Amoeba with water and ion Xioling Chuang (Fri Jun 17 2011 - 23:07:10 PDT)
- [AMBER] Resp charge Takeshi Baba (Sat Jun 18 2011 - 01:18:51 PDT)
- [AMBER] Antechamber: Failure to calculate Mulliken partial charges using a Tripos MOL2 input file Joel Dockray (Sat Jun 18 2011 - 17:09:32 PDT)
- [AMBER] ambertools.1.5 installation errors on Linux Francesco Pietra (Mon Jun 20 2011 - 01:15:48 PDT)
- [AMBER] Error compiling ambertools 1.5 Daniel Sindhikara (Mon Jun 20 2011 - 03:23:56 PDT)
- [AMBER] ambertools 1.2 compilation error on Debian Linux Francesco Pietra (Mon Jun 20 2011 - 07:36:58 PDT)
- Re: [AMBER] Solid surface simulation in Amber - the recommended approach ? peker milas (Mon Jun 20 2011 - 10:17:17 PDT)
- [AMBER] problems with relaxing a phosphonamide parametrizated with Antechamber gloriarg (Mon Jun 20 2011 - 10:36:59 PDT)
- [AMBER] AmberTools 1.5 gnu compilation fails under FC15 pamodeo (Mon Jun 20 2011 - 13:11:22 PDT)
- [AMBER] Amoeba with water and ions (2) Xioling Chuang (Mon Jun 20 2011 - 19:05:48 PDT)
- [AMBER] How to prepare ATP with Antechamber? Azat Mukhametov (Tue Jun 21 2011 - 01:57:08 PDT)
- [AMBER] Sirius software CHAMI F. (Tue Jun 21 2011 - 03:03:35 PDT)
- [AMBER] Request for Amber Heme parameter file Prajwal Nandekar (Tue Jun 21 2011 - 04:25:57 PDT)
- [AMBER] intra- and interstrand interaction energies of DNA clwg (Tue Jun 21 2011 - 07:23:42 PDT)
- [AMBER] MMPBSA-binding energy calculation baljinder (Tue Jun 21 2011 - 07:25:51 PDT)
- [AMBER] restraints file Massimiliano Porrini (Tue Jun 21 2011 - 08:51:51 PDT)
- [AMBER] regarding per residue decomposition of binding free energy using perl script Hirdesh Kumar (Tue Jun 21 2011 - 09:45:09 PDT)
- [AMBER] Non-periodic behavior of NMR restraints upon restart in a periodic system Keith Yarem (Tue Jun 21 2011 - 09:57:00 PDT)
- [AMBER] Suggestion for minor user manual clarification Christoph Klein (Tue Jun 21 2011 - 11:13:53 PDT)
- [AMBER] Nmode calculations using Amber 8 manikanthan bhavaraju (Tue Jun 21 2011 - 12:29:14 PDT)
- [AMBER] trouble installing Amber 10 Jennifer L. Muzyka (Tue Jun 21 2011 - 13:45:41 PDT)
- [AMBER] Vibrational entropy with NAB Emmanuel Baribefe Naziga (Tue Jun 21 2011 - 17:17:42 PDT)
- [AMBER] alanine mutagenisis in amber caobb0214 (Tue Jun 21 2011 - 17:44:25 PDT)
- [AMBER] regarding per residue wise free energy decomposition Hirdesh Kumar (Tue Jun 21 2011 - 21:57:05 PDT)
- [AMBER] Velocity autocorrelation function DEBOSTUTI GHOSHDASTIDAR (Wed Jun 22 2011 - 02:10:28 PDT)
- [AMBER] energy of a single amino acid during minimization André C. Stiel (Wed Jun 22 2011 - 03:10:47 PDT)
- [AMBER] forrtl: severe (64): input conversion error, unit 9 Alessio Atzori (Wed Jun 22 2011 - 04:10:56 PDT)
- [AMBER] ptraj cluster Katrine Kirkeby Skeby (Wed Jun 22 2011 - 04:21:58 PDT)
- [AMBER] interaction energies of DNA clwg (Wed Jun 22 2011 - 08:24:54 PDT)
- [AMBER] query regarding void volume calculation in protein-ligand complex Hirdesh Kumar (Wed Jun 22 2011 - 12:09:05 PDT)
- [AMBER] AMBER 11 and Ambertools 1.5 Installs failing tests for mmpbsa_py Maria (Wed Jun 22 2011 - 14:18:47 PDT)
- [AMBER] NMR chemical shift restraints for an intrinsically disordered peptide Thomas Evangelidis (Thu Jun 23 2011 - 02:32:06 PDT)
- [AMBER] mm_pbsa.pl with Fe(III) ion pirincn (Thu Jun 23 2011 - 05:38:54 PDT)
- [AMBER] DIELC constant for normal mode analyses in vacuum ? Marek Maly (Thu Jun 23 2011 - 05:55:04 PDT)
- [AMBER] AmberTools 1.5 + Amber 11 installation - bugfixes conflicts? Richard Owczarzy (Thu Jun 23 2011 - 07:17:59 PDT)
- Re: [AMBER] CUDA 4.0 RC Bill Snapko (Thu Jun 23 2011 - 09:12:55 PDT)
- [AMBER] give_diff_runs balaji nagarajan (Thu Jun 23 2011 - 12:29:47 PDT)
- [AMBER] secondary structure plotting Jagur Lambix (Thu Jun 23 2011 - 13:45:44 PDT)
- [AMBER] single amino acid energies André C. Stiel (Fri Jun 24 2011 - 00:14:04 PDT)
- [AMBER] Sander Error Ali Faruqi (Fri Jun 24 2011 - 01:07:12 PDT)
- [AMBER] tleap error in reading structure generated from GLYCAM web mish (Fri Jun 24 2011 - 01:58:11 PDT)
- [AMBER] Entropy Decomposition Daniel Aiello (Fri Jun 24 2011 - 08:08:39 PDT)
- [AMBER] Glycam Parameters for O-SIALIC ACID mish (Fri Jun 24 2011 - 08:21:00 PDT)
- [AMBER] About the coordinates of input or output files Aimin Guo (Fri Jun 24 2011 - 10:21:37 PDT)
- Re: [AMBER] installing ambertools Lachele Foley (Lists) (Fri Jun 24 2011 - 13:54:09 PDT)
- [AMBER] Question on the construction of a topology file lnedialkova.gmail.com (Fri Jun 24 2011 - 14:31:24 PDT)
- [AMBER] Architecture/compiler is not supported Error! Ali Faruqi (Sat Jun 25 2011 - 03:36:53 PDT)
- [AMBER] AMBER: error in reading namelist cntrl Antonio Peón López (Sat Jun 25 2011 - 14:14:50 PDT)
- [AMBER] Prevent tleap to rearrange my ions? chicago.ecnu (Sun Jun 26 2011 - 03:18:13 PDT)
- [AMBER] error running mmpbsa John S (Sun Jun 26 2011 - 14:26:54 PDT)
- [AMBER] Error mmpbsa John S (Sun Jun 26 2011 - 20:29:24 PDT)
- [AMBER] Problems Compiling Amber11 Parallel GPU Alison Lynton (Sun Jun 26 2011 - 20:33:40 PDT)
- [AMBER] how to assess the convergence of the clustering 475649770 (Sun Jun 26 2011 - 20:19:12 PDT)
- [AMBER] saving the first solvent shell molecules by Ptraj Zhu Tong (Mon Jun 27 2011 - 05:24:21 PDT)
- [AMBER] CHAMBER prmtop Manish (Mon Jun 27 2011 - 09:41:02 PDT)
- [AMBER] Steered Molecular Dynamics George Tzotzos (Mon Jun 27 2011 - 10:49:57 PDT)
- [AMBER] Natural Language Angle Restraint Kevin Olsson (Mon Jun 27 2011 - 13:50:15 PDT)
- [AMBER] netcdf Takeshi Baba (Mon Jun 27 2011 - 21:08:51 PDT)
- [AMBER] Kinetic energy in mdout file is not identical to that calculated from mdvel file. kurisaki (Tue Jun 28 2011 - 01:19:29 PDT)
- [AMBER] MM-GBSA with QM/MM Aust, Susanne (Tue Jun 28 2011 - 02:27:34 PDT)
- [AMBER] I want to add amide group at the end of my peptide ? Esam Tolba (Tue Jun 28 2011 - 03:12:04 PDT)
- [AMBER] software assistance Mr. Joseph S. Castle (Tue Jun 28 2011 - 06:05:57 PDT)
- [AMBER] query with multocomponent system kaustubh joshi (Tue Jun 28 2011 - 07:49:29 PDT)
- [AMBER] Inquiry about installing AMBER Mo Chen (Tue Jun 28 2011 - 08:33:19 PDT)
- [AMBER] Installation Problem Elisa Frezza (Tue Jun 28 2011 - 10:19:54 PDT)
- [AMBER] ff03 force field tsurma.umich.edu (Tue Jun 28 2011 - 11:07:19 PDT)
- [AMBER] ptraj in parallel Fabrício Bracht (Tue Jun 28 2011 - 11:06:06 PDT)
- [AMBER] Recompiling amber 8 on IBM manikanthan bhavaraju (Tue Jun 28 2011 - 13:54:30 PDT)
- [AMBER] Suggestions for additions to AmberTools Francesco Pietra (Tue Jun 28 2011 - 14:21:25 PDT)
- [AMBER] Nmode with amber8 manikanthan bhavaraju (Tue Jun 28 2011 - 14:47:52 PDT)
- [AMBER] RNA duplex Charles Johnson (Tue Jun 28 2011 - 17:33:45 PDT)
- [AMBER] AMBER9- error in LEaP while learning MMPBSA tutorial Sheau Chen Lee (Tue Jun 28 2011 - 20:23:25 PDT)
- [AMBER] Uracil is not recognised as a nucleotide in Xleap - in FF99 hari krishna (Tue Jun 28 2011 - 23:50:40 PDT)
- [AMBER] Sander Compilation Problem Ali Faruqi (Tue Jun 28 2011 - 23:51:14 PDT)
- [AMBER] NETCDF Installation Error Ali Faruqi (Wed Jun 29 2011 - 04:10:02 PDT)
- [AMBER] dist restraint e p (Wed Jun 29 2011 - 06:08:00 PDT)
- [AMBER] Problem in the energetics of the system Shake cannot be accomplished. hari krishna (Wed Jun 29 2011 - 08:06:24 PDT)
- [AMBER] Non-Standard Residues Problems David Cantu (Wed Jun 29 2011 - 10:38:36 PDT)
- [AMBER] VMD-Chamber interface Mo Chen (Wed Jun 29 2011 - 13:20:19 PDT)
- [AMBER] Dihedral parameters for sp carbon in GAFF Hai Long (Wed Jun 29 2011 - 16:38:08 PDT)
- [AMBER] Leap adds atoms to pdb (tutorial B1) Chirag Vora (Wed Jun 29 2011 - 22:48:48 PDT)
- [AMBER] AMBER Workshop in Shanghai, China, August 22-26, 2011 Andreas Goetz (Thu Jun 30 2011 - 00:50:28 PDT)
- [AMBER] Adding NH2 at the end of peptide Esam Tolba (Thu Jun 30 2011 - 03:51:55 PDT)
- [AMBER] MMPBSA Raja Pandian (Thu Jun 30 2011 - 03:56:01 PDT)
- [AMBER] using Mg with ff99SB Irene Newhouse (Thu Jun 30 2011 - 14:24:20 PDT)
- [AMBER] Fwd: najmul arfin (Thu Jun 30 2011 - 22:21:32 PDT)
- Last message date: Fri Jul 01 2011 - 02:00:03 PDT
- Archived on: Fri Nov 22 2024 - 05:54:17 PST
