Starting installation of MTK++ at Fri May 20 14:50:20 CEST 2011. (cd mtkpp && make install ) make[1]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp' Making install in src make[2]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src' Making install in Diagnostics make[3]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Diagnostics' /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I./.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT MTKException.lo -MD -MP -MF .deps/MTKException.Tpo -c -o MTKException.lo MTKException.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I./.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT MTKException.lo -MD -MP -MF .deps/MTKException.Tpo -c MTKException.cpp -o MTKException.o mv -f .deps/MTKException.Tpo .deps/MTKException.Plo /bin/sh ../../libtool --tag=CXX --mode=link icpc -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -o libDiagnostics.la -rpath /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib MTKException.lo libtool: link: ar cru .libs/libDiagnostics.a MTKException.o libtool: link: ranlib .libs/libDiagnostics.a libtool: link: ( cd ".libs" && rm -f "libDiagnostics.la" && ln -s "../libDiagnostics.la" "libDiagnostics.la" ) make[4]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Diagnostics' test -z "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib" || /bin/mkdir -p "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib" /bin/sh ../../libtool --mode=install /usr/bin/install -c libDiagnostics.la '/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib' libtool: install: /usr/bin/install -c .libs/libDiagnostics.lai /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/libDiagnostics.la libtool: install: /usr/bin/install -c .libs/libDiagnostics.a /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/libDiagnostics.a libtool: install: chmod 644 /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/libDiagnostics.a libtool: install: ranlib /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/libDiagnostics.a libtool: finish: PATH="/usr/mpi/intel/openmpi-1.4.2/bin:/opt/intel/Compiler/11.1/059/bin/intel64:/opt/intel/Compiler/11.1/059/bin/intel64:/opt/hplsf/7.0/linux2.6-glibc2.3-x86_64/etc:/opt/hplsf/7.0/linux2.6-glibc2.3-x86_64/bin:/usr/users/vcojoca/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib64/jvm/jre/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/gwdg/bin:/sbin" ldconfig -n /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib ---------------------------------------------------------------------- Libraries have been installed in: /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/include/mtkpp/Diagnostics" || /bin/mkdir -p "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/include/mtkpp/Diagnostics" /usr/bin/install -c -m 644 MTKException.h '/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/include/mtkpp/Diagnostics' make[4]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Diagnostics' make[3]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Diagnostics' Making install in tinyxml make[3]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/tinyxml' /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT tinyxml.lo -MD -MP -MF .deps/tinyxml.Tpo -c -o tinyxml.lo tinyxml.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT tinyxml.lo -MD -MP -MF .deps/tinyxml.Tpo -c tinyxml.cpp -o tinyxml.o mv -f .deps/tinyxml.Tpo .deps/tinyxml.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT tinyxmlerror.lo -MD -MP -MF .deps/tinyxmlerror.Tpo -c -o tinyxmlerror.lo tinyxmlerror.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT tinyxmlerror.lo -MD -MP -MF .deps/tinyxmlerror.Tpo -c tinyxmlerror.cpp -o tinyxmlerror.o mv -f .deps/tinyxmlerror.Tpo .deps/tinyxmlerror.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT tinystr.lo -MD -MP -MF .deps/tinystr.Tpo -c -o tinystr.lo tinystr.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT tinystr.lo -MD -MP -MF .deps/tinystr.Tpo -c tinystr.cpp -o tinystr.o mv -f .deps/tinystr.Tpo .deps/tinystr.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT tinyxmlparser.lo -MD -MP -MF .deps/tinyxmlparser.Tpo -c -o tinyxmlparser.lo tinyxmlparser.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT tinyxmlparser.lo -MD -MP -MF .deps/tinyxmlparser.Tpo -c tinyxmlparser.cpp -o tinyxmlparser.o mv -f .deps/tinyxmlparser.Tpo .deps/tinyxmlparser.Plo /bin/sh ../../libtool --tag=CXX --mode=link icpc -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -o libtinyxml.la -rpath /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib tinyxml.lo tinyxmlerror.lo tinystr.lo tinyxmlparser.lo libtool: link: ar cru .libs/libtinyxml.a tinyxml.o tinyxmlerror.o tinystr.o tinyxmlparser.o libtool: link: ranlib .libs/libtinyxml.a libtool: link: ( cd ".libs" && rm -f "libtinyxml.la" && ln -s "../libtinyxml.la" "libtinyxml.la" ) make[4]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/tinyxml' test -z "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib" || /bin/mkdir -p "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib" /bin/sh ../../libtool --mode=install /usr/bin/install -c libtinyxml.la '/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib' libtool: install: /usr/bin/install -c .libs/libtinyxml.lai /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/libtinyxml.la libtool: install: /usr/bin/install -c .libs/libtinyxml.a /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/libtinyxml.a libtool: install: chmod 644 /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/libtinyxml.a libtool: install: ranlib /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/libtinyxml.a libtool: finish: PATH="/usr/mpi/intel/openmpi-1.4.2/bin:/opt/intel/Compiler/11.1/059/bin/intel64:/opt/intel/Compiler/11.1/059/bin/intel64:/opt/hplsf/7.0/linux2.6-glibc2.3-x86_64/etc:/opt/hplsf/7.0/linux2.6-glibc2.3-x86_64/bin:/usr/users/vcojoca/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib64/jvm/jre/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/gwdg/bin:/sbin" ldconfig -n /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib ---------------------------------------------------------------------- Libraries have been installed in: /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/include/mtkpp/tinyxml" || /bin/mkdir -p "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/include/mtkpp/tinyxml" /usr/bin/install -c -m 644 tinystr.h tinyxml.h '/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/include/mtkpp/tinyxml' make[4]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/tinyxml' make[3]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/tinyxml' Making install in Log make[3]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Log' /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I./.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT error.lo -MD -MP -MF .deps/error.Tpo -c -o error.lo error.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I./.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT error.lo -MD -MP -MF .deps/error.Tpo -c error.cpp -o error.o mv -f .deps/error.Tpo .deps/error.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I./.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT errorHandler.lo -MD -MP -MF .deps/errorHandler.Tpo -c -o errorHandler.lo errorHandler.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I./.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT errorHandler.lo -MD -MP -MF .deps/errorHandler.Tpo -c errorHandler.cpp -o errorHandler.o mv -f .deps/errorHandler.Tpo .deps/errorHandler.Plo /bin/sh ../../libtool --tag=CXX --mode=link icpc -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -o libLog.la -rpath /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib error.lo errorHandler.lo libtool: link: ar cru .libs/libLog.a error.o errorHandler.o libtool: link: ranlib .libs/libLog.a libtool: link: ( cd ".libs" && rm -f "libLog.la" && ln -s "../libLog.la" "libLog.la" ) make[4]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Log' test -z "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib" || /bin/mkdir -p "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib" /bin/sh ../../libtool --mode=install /usr/bin/install -c libLog.la '/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib' libtool: install: /usr/bin/install -c .libs/libLog.lai /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/libLog.la libtool: install: /usr/bin/install -c .libs/libLog.a /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/libLog.a libtool: install: chmod 644 /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/libLog.a libtool: install: ranlib /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/libLog.a libtool: finish: PATH="/usr/mpi/intel/openmpi-1.4.2/bin:/opt/intel/Compiler/11.1/059/bin/intel64:/opt/intel/Compiler/11.1/059/bin/intel64:/opt/hplsf/7.0/linux2.6-glibc2.3-x86_64/etc:/opt/hplsf/7.0/linux2.6-glibc2.3-x86_64/bin:/usr/users/vcojoca/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib64/jvm/jre/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/gwdg/bin:/sbin" ldconfig -n /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib ---------------------------------------------------------------------- Libraries have been installed in: /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/include/mtkpp/Log" || /bin/mkdir -p "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/include/mtkpp/Log" /usr/bin/install -c -m 644 error.h errorHandler.h '/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/include/mtkpp/Log' make[4]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Log' make[3]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Log' Making install in Statistics make[3]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Statistics' /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT sheet.lo -MD -MP -MF .deps/sheet.Tpo -c -o sheet.lo sheet.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT sheet.lo -MD -MP -MF .deps/sheet.Tpo -c sheet.cpp -o sheet.o mv -f .deps/sheet.Tpo .deps/sheet.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT BaseStats.lo -MD -MP -MF .deps/BaseStats.Tpo -c -o BaseStats.lo BaseStats.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT BaseStats.lo -MD -MP -MF .deps/BaseStats.Tpo -c BaseStats.cpp -o BaseStats.o mv -f .deps/BaseStats.Tpo .deps/BaseStats.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT ols.lo -MD -MP -MF .deps/ols.Tpo -c -o ols.lo ols.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT ols.lo -MD -MP -MF .deps/ols.Tpo -c ols.cpp -o ols.o mv -f .deps/ols.Tpo .deps/ols.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT pca.lo -MD -MP -MF .deps/pca.Tpo -c -o pca.lo pca.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT pca.lo -MD -MP -MF .deps/pca.Tpo -c pca.cpp -o pca.o mv -f .deps/pca.Tpo .deps/pca.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT pls.lo -MD -MP -MF .deps/pls.Tpo -c -o pls.lo pls.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT pls.lo -MD -MP -MF .deps/pls.Tpo -c pls.cpp -o pls.o mv -f .deps/pls.Tpo .deps/pls.Plo /bin/sh ../../libtool --tag=CXX --mode=link icpc -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -o libStatistics.la -rpath /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib sheet.lo BaseStats.lo ols.lo pca.lo pls.lo -lz libtool: link: ar cru .libs/libStatistics.a sheet.o BaseStats.o ols.o pca.o pls.o libtool: link: ranlib .libs/libStatistics.a libtool: link: ( cd ".libs" && rm -f "libStatistics.la" && ln -s "../libStatistics.la" "libStatistics.la" ) make[4]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Statistics' test -z "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib" || /bin/mkdir -p "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib" /bin/sh ../../libtool --mode=install /usr/bin/install -c libStatistics.la '/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib' libtool: install: /usr/bin/install -c .libs/libStatistics.lai /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/libStatistics.la libtool: install: /usr/bin/install -c .libs/libStatistics.a /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/libStatistics.a libtool: install: chmod 644 /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/libStatistics.a libtool: install: ranlib /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/libStatistics.a libtool: finish: PATH="/usr/mpi/intel/openmpi-1.4.2/bin:/opt/intel/Compiler/11.1/059/bin/intel64:/opt/intel/Compiler/11.1/059/bin/intel64:/opt/hplsf/7.0/linux2.6-glibc2.3-x86_64/etc:/opt/hplsf/7.0/linux2.6-glibc2.3-x86_64/bin:/usr/users/vcojoca/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib64/jvm/jre/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/gwdg/bin:/sbin" ldconfig -n /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib ---------------------------------------------------------------------- Libraries have been installed in: /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/include/mtkpp/Statistics" || /bin/mkdir -p "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/include/mtkpp/Statistics" /usr/bin/install -c -m 644 table.h sheet.h BaseStats.h ols.h pca.h pls.h '/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/include/mtkpp/Statistics' make[4]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Statistics' make[3]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Statistics' Making install in Graph make[3]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Graph' /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I./.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT vertex.lo -MD -MP -MF .deps/vertex.Tpo -c -o vertex.lo vertex.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I./.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT vertex.lo -MD -MP -MF .deps/vertex.Tpo -c vertex.cpp -o vertex.o mv -f .deps/vertex.Tpo .deps/vertex.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I./.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT graph.lo -MD -MP -MF .deps/graph.Tpo -c -o graph.lo graph.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I./.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT graph.lo -MD -MP -MF .deps/graph.Tpo -c graph.cpp -o graph.o mv -f .deps/graph.Tpo .deps/graph.Plo /bin/sh ../../libtool --tag=CXX --mode=link icpc -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -o libGraph.la -rpath /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib vertex.lo graph.lo libtool: link: ar cru .libs/libGraph.a vertex.o graph.o libtool: link: ranlib .libs/libGraph.a libtool: link: ( cd ".libs" && rm -f "libGraph.la" && ln -s "../libGraph.la" "libGraph.la" ) make[4]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Graph' test -z "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib" || /bin/mkdir -p "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib" /bin/sh ../../libtool --mode=install /usr/bin/install -c libGraph.la '/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib' libtool: install: /usr/bin/install -c .libs/libGraph.lai /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/libGraph.la libtool: install: /usr/bin/install -c .libs/libGraph.a /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/libGraph.a libtool: install: chmod 644 /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/libGraph.a libtool: install: ranlib /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/libGraph.a libtool: finish: PATH="/usr/mpi/intel/openmpi-1.4.2/bin:/opt/intel/Compiler/11.1/059/bin/intel64:/opt/intel/Compiler/11.1/059/bin/intel64:/opt/hplsf/7.0/linux2.6-glibc2.3-x86_64/etc:/opt/hplsf/7.0/linux2.6-glibc2.3-x86_64/bin:/usr/users/vcojoca/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib64/jvm/jre/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/gwdg/bin:/sbin" ldconfig -n /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib ---------------------------------------------------------------------- Libraries have been installed in: /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/include/mtkpp/Graph" || /bin/mkdir -p "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/include/mtkpp/Graph" /usr/bin/install -c -m 644 edge.h vertex.h graph.h '/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/include/mtkpp/Graph' make[4]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Graph' make[3]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Graph' Making install in Molecule make[3]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Molecule' /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT collection.lo -MD -MP -MF .deps/collection.Tpo -c -o collection.lo collection.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT collection.lo -MD -MP -MF .deps/collection.Tpo -c collection.cpp -o collection.o mv -f .deps/collection.Tpo .deps/collection.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT molecule.lo -MD -MP -MF .deps/molecule.Tpo -c -o molecule.lo molecule.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT molecule.lo -MD -MP -MF .deps/molecule.Tpo -c molecule.cpp -o molecule.o mv -f .deps/molecule.Tpo .deps/molecule.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT submolecule.lo -MD -MP -MF .deps/submolecule.Tpo -c -o submolecule.lo submolecule.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT submolecule.lo -MD -MP -MF .deps/submolecule.Tpo -c submolecule.cpp -o submolecule.o mv -f .deps/submolecule.Tpo .deps/submolecule.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT atom.lo -MD -MP -MF .deps/atom.Tpo -c -o atom.lo atom.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT atom.lo -MD -MP -MF .deps/atom.Tpo -c atom.cpp -o atom.o mv -f .deps/atom.Tpo .deps/atom.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. 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.deps/selection.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT metalCenter.lo -MD -MP -MF .deps/metalCenter.Tpo -c -o metalCenter.lo metalCenter.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT metalCenter.lo -MD -MP -MF .deps/metalCenter.Tpo -c metalCenter.cpp -o metalCenter.o mv -f .deps/metalCenter.Tpo .deps/metalCenter.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT seqAlign.lo -MD -MP -MF .deps/seqAlign.Tpo -c -o seqAlign.lo seqAlign.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT seqAlign.lo -MD -MP -MF .deps/seqAlign.Tpo -c seqAlign.cpp -o seqAlign.o mv -f .deps/seqAlign.Tpo .deps/seqAlign.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT complex.lo -MD -MP -MF .deps/complex.Tpo -c -o complex.lo complex.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT complex.lo -MD -MP -MF .deps/complex.Tpo -c complex.cpp -o complex.o mv -f .deps/complex.Tpo .deps/complex.Plo /bin/sh ../../libtool --tag=CXX --mode=link icpc -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -L../../src/Graph/ -L../../src/Log/ -L../../src/Diagnostics/ -o libMolecule.la -rpath /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib collection.lo molecule.lo submolecule.lo atom.lo element.lo connections.lo ring.lo conformer.lo parameters.lo atomType.lo atomTyper.lo stdLibrary.lo stdGroup.lo stdFrag.lo protonate.lo proProtonate.lo ligProtonate.lo watProtonate.lo fingerPrint.lo functionalize.lo hydrophobize.lo hybridize.lo pharmacophore.lo superimpose.lo selection.lo metalCenter.lo seqAlign.lo complex.lo -lGraph -lLog -lDiagnostics -lz libtool: link: ar cru .libs/libMolecule.a collection.o molecule.o submolecule.o atom.o element.o connections.o ring.o conformer.o parameters.o atomType.o atomTyper.o stdLibrary.o stdGroup.o stdFrag.o protonate.o proProtonate.o ligProtonate.o watProtonate.o fingerPrint.o functionalize.o hydrophobize.o hybridize.o pharmacophore.o superimpose.o selection.o metalCenter.o seqAlign.o complex.o libtool: link: ranlib .libs/libMolecule.a libtool: link: ( cd ".libs" && rm -f "libMolecule.la" && ln -s "../libMolecule.la" "libMolecule.la" ) make[4]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Molecule' test -z "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib" || /bin/mkdir -p "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib" /bin/sh ../../libtool --mode=install /usr/bin/install -c libMolecule.la '/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib' libtool: install: /usr/bin/install -c .libs/libMolecule.lai /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/libMolecule.la libtool: install: /usr/bin/install -c .libs/libMolecule.a /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/libMolecule.a libtool: install: chmod 644 /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/libMolecule.a libtool: install: ranlib /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/libMolecule.a libtool: finish: PATH="/usr/mpi/intel/openmpi-1.4.2/bin:/opt/intel/Compiler/11.1/059/bin/intel64:/opt/intel/Compiler/11.1/059/bin/intel64:/opt/hplsf/7.0/linux2.6-glibc2.3-x86_64/etc:/opt/hplsf/7.0/linux2.6-glibc2.3-x86_64/bin:/usr/users/vcojoca/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib64/jvm/jre/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/gwdg/bin:/sbin" ldconfig -n /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib ---------------------------------------------------------------------- Libraries have been installed in: /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/include/mtkpp/Molecule" || /bin/mkdir -p "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/include/mtkpp/Molecule" /usr/bin/install -c -m 644 collection.h molecule.h submolecule.h atom.h element.h connections.h bond.h angle.h improper.h torsion.h ring.h conformer.h atomTyper.h atomType.h parameters.h stdLibrary.h stdGroup.h stdFrag.h protonate.h proProtonate.h ligProtonate.h watProtonate.h fingerPrint.h functionalize.h hydrophobize.h hybridize.h pharmacophore.h superimpose.h selection.h metalCenter.h seqAlign.h complex.h utility.h version.h '/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/include/mtkpp/Molecule' make[4]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Molecule' make[3]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Molecule' Making install in GA make[3]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/GA' /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT gaWorld.lo -MD -MP -MF .deps/gaWorld.Tpo -c -o gaWorld.lo gaWorld.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT gaWorld.lo -MD -MP -MF .deps/gaWorld.Tpo -c gaWorld.cpp -o gaWorld.o mv -f .deps/gaWorld.Tpo .deps/gaWorld.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT gaRegion.lo -MD -MP -MF .deps/gaRegion.Tpo -c -o gaRegion.lo gaRegion.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT gaRegion.lo -MD -MP -MF .deps/gaRegion.Tpo -c gaRegion.cpp -o gaRegion.o mv -f .deps/gaRegion.Tpo .deps/gaRegion.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT gaPopulation.lo -MD -MP -MF .deps/gaPopulation.Tpo -c -o gaPopulation.lo gaPopulation.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT gaPopulation.lo -MD -MP -MF .deps/gaPopulation.Tpo -c gaPopulation.cpp -o gaPopulation.o mv -f .deps/gaPopulation.Tpo .deps/gaPopulation.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT gaIndividual.lo -MD -MP -MF .deps/gaIndividual.Tpo -c -o gaIndividual.lo gaIndividual.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT gaIndividual.lo -MD -MP -MF .deps/gaIndividual.Tpo -c gaIndividual.cpp -o gaIndividual.o mv -f .deps/gaIndividual.Tpo .deps/gaIndividual.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK 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-I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT gaGene.lo -MD -MP -MF .deps/gaGene.Tpo -c gaGene.cpp -o gaGene.o mv -f .deps/gaGene.Tpo .deps/gaGene.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT gaOperators.lo -MD -MP -MF .deps/gaOperators.Tpo -c -o gaOperators.lo gaOperators.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT 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-I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT gaCrossOver.lo -MD -MP -MF .deps/gaCrossOver.Tpo -c -o gaCrossOver.lo gaCrossOver.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT gaCrossOver.lo -MD -MP -MF .deps/gaCrossOver.Tpo -c gaCrossOver.cpp -o gaCrossOver.o mv -f .deps/gaCrossOver.Tpo .deps/gaCrossOver.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT gaMutate.lo -MD -MP -MF .deps/gaMutate.Tpo -c -o gaMutate.lo gaMutate.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT gaMutate.lo -MD -MP -MF .deps/gaMutate.Tpo -c gaMutate.cpp -o gaMutate.o mv -f .deps/gaMutate.Tpo .deps/gaMutate.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT gaGaussian.lo -MD -MP -MF .deps/gaGaussian.Tpo -c -o gaGaussian.lo gaGaussian.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT gaGaussian.lo -MD -MP -MF .deps/gaGaussian.Tpo -c gaGaussian.cpp -o gaGaussian.o mv -f .deps/gaGaussian.Tpo .deps/gaGaussian.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT gaSelection.lo -MD -MP -MF .deps/gaSelection.Tpo -c -o gaSelection.lo gaSelection.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT gaSelection.lo -MD -MP -MF .deps/gaSelection.Tpo -c gaSelection.cpp -o gaSelection.o mv -f .deps/gaSelection.Tpo .deps/gaSelection.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT gaOutput.lo -MD -MP -MF .deps/gaOutput.Tpo -c -o gaOutput.lo gaOutput.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT gaOutput.lo -MD -MP -MF .deps/gaOutput.Tpo -c gaOutput.cpp -o gaOutput.o mv -f .deps/gaOutput.Tpo .deps/gaOutput.Plo /bin/sh ../../libtool --tag=CXX --mode=link icpc -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -o libGA.la -rpath /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib gaWorld.lo gaRegion.lo gaPopulation.lo gaIndividual.lo gaChromosome.lo gaGene.lo gaOperators.lo gaAverage.lo gaCrossOver.lo gaMutate.lo gaGaussian.lo gaSelection.lo gaOutput.lo libtool: link: ar cru .libs/libGA.a gaWorld.o gaRegion.o gaPopulation.o gaIndividual.o gaChromosome.o gaGene.o gaOperators.o gaAverage.o gaCrossOver.o gaMutate.o gaGaussian.o gaSelection.o gaOutput.o libtool: link: ranlib .libs/libGA.a libtool: link: ( cd ".libs" && rm -f "libGA.la" && ln -s "../libGA.la" "libGA.la" ) make[4]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/GA' test -z "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib" || /bin/mkdir -p "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib" /bin/sh ../../libtool --mode=install /usr/bin/install -c libGA.la '/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib' libtool: install: /usr/bin/install -c .libs/libGA.lai /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/libGA.la libtool: install: /usr/bin/install -c .libs/libGA.a /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/libGA.a libtool: install: chmod 644 /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/libGA.a libtool: install: ranlib /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/libGA.a libtool: finish: PATH="/usr/mpi/intel/openmpi-1.4.2/bin:/opt/intel/Compiler/11.1/059/bin/intel64:/opt/intel/Compiler/11.1/059/bin/intel64:/opt/hplsf/7.0/linux2.6-glibc2.3-x86_64/etc:/opt/hplsf/7.0/linux2.6-glibc2.3-x86_64/bin:/usr/users/vcojoca/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib64/jvm/jre/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/gwdg/bin:/sbin" ldconfig -n /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib ---------------------------------------------------------------------- Libraries have been installed in: /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/include/mtkpp/GA" || /bin/mkdir -p "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/include/mtkpp/GA" /usr/bin/install -c -m 644 gaWorld.h gaRegion.h gaPopulation.h gaIndividual.h gaChromosome.h gaGene.h gaOperators.h gaAverage.h gaCrossOver.h gaMutate.h gaGaussian.h gaSelection.h gaOutput.h gaVersion.h '/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/include/mtkpp/GA' make[4]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/GA' make[3]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/GA' Making install in MM make[3]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/MM' /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I./.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT mmPotential.lo -MD -MP -MF .deps/mmPotential.Tpo -c -o mmPotential.lo mmPotential.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I./.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT mmPotential.lo -MD -MP -MF .deps/mmPotential.Tpo -c mmPotential.cpp -o mmPotential.o mv -f .deps/mmPotential.Tpo .deps/mmPotential.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I./.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT amber.lo -MD -MP -MF .deps/amber.Tpo -c -o amber.lo amber.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I./.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT amber.lo -MD -MP -MF .deps/amber.Tpo -c amber.cpp -o amber.o mv -f .deps/amber.Tpo .deps/amber.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I./.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT amberBond.lo -MD -MP -MF .deps/amberBond.Tpo -c -o amberBond.lo amberBond.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I./.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT amberBond.lo -MD -MP -MF .deps/amberBond.Tpo -c amberBond.cpp -o amberBond.o mv -f .deps/amberBond.Tpo .deps/amberBond.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I./.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT amberAngle.lo -MD -MP -MF .deps/amberAngle.Tpo -c -o amberAngle.lo amberAngle.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I./.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT amberAngle.lo -MD -MP -MF .deps/amberAngle.Tpo -c amberAngle.cpp -o amberAngle.o mv -f .deps/amberAngle.Tpo .deps/amberAngle.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I./.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT amberTorsion.lo -MD -MP -MF .deps/amberTorsion.Tpo -c -o amberTorsion.lo amberTorsion.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I./.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT amberTorsion.lo -MD -MP -MF .deps/amberTorsion.Tpo -c amberTorsion.cpp -o amberTorsion.o mv -f .deps/amberTorsion.Tpo .deps/amberTorsion.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I./.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT amberImproper.lo -MD -MP -MF .deps/amberImproper.Tpo -c -o amberImproper.lo amberImproper.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I./.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT amberImproper.lo -MD -MP -MF .deps/amberImproper.Tpo -c amberImproper.cpp -o amberImproper.o mv -f .deps/amberImproper.Tpo .deps/amberImproper.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I./.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT amberNonBonded.lo -MD -MP -MF .deps/amberNonBonded.Tpo -c -o amberNonBonded.lo amberNonBonded.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I./.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT amberNonBonded.lo -MD -MP -MF .deps/amberNonBonded.Tpo -c amberNonBonded.cpp -o amberNonBonded.o mv -f .deps/amberNonBonded.Tpo .deps/amberNonBonded.Plo /bin/sh ../../libtool --tag=CXX --mode=link icpc -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -L../../src/Log/ -o libMM.la -rpath /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib mmPotential.lo amber.lo amberBond.lo amberAngle.lo amberTorsion.lo amberImproper.lo amberNonBonded.lo -lLog libtool: link: ar cru .libs/libMM.a mmPotential.o amber.o amberBond.o amberAngle.o amberTorsion.o amberImproper.o amberNonBonded.o libtool: link: ranlib .libs/libMM.a libtool: link: ( cd ".libs" && rm -f "libMM.la" && ln -s "../libMM.la" "libMM.la" ) make[4]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/MM' test -z "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib" || /bin/mkdir -p "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib" /bin/sh ../../libtool --mode=install /usr/bin/install -c libMM.la '/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib' libtool: install: /usr/bin/install -c .libs/libMM.lai /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/libMM.la libtool: install: /usr/bin/install -c .libs/libMM.a /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/libMM.a libtool: install: chmod 644 /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/libMM.a libtool: install: ranlib /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/libMM.a libtool: finish: PATH="/usr/mpi/intel/openmpi-1.4.2/bin:/opt/intel/Compiler/11.1/059/bin/intel64:/opt/intel/Compiler/11.1/059/bin/intel64:/opt/hplsf/7.0/linux2.6-glibc2.3-x86_64/etc:/opt/hplsf/7.0/linux2.6-glibc2.3-x86_64/bin:/usr/users/vcojoca/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib64/jvm/jre/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/gwdg/bin:/sbin" ldconfig -n /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib ---------------------------------------------------------------------- Libraries have been installed in: /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/include/mtkpp/MM" || /bin/mkdir -p "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/include/mtkpp/MM" /usr/bin/install -c -m 644 mmPotential.h amber.h amberBond.h amberAngle.h amberTorsion.h amberImproper.h amberNonBonded.h '/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/include/mtkpp/MM' make[4]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/MM' make[3]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/MM' Making install in Minimizers make[3]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Minimizers' /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I./.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT lbfgs.lo -MD -MP -MF .deps/lbfgs.Tpo -c -o lbfgs.lo lbfgs.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I./.. -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT lbfgs.lo -MD -MP -MF .deps/lbfgs.Tpo -c lbfgs.cpp -o lbfgs.o mv -f .deps/lbfgs.Tpo .deps/lbfgs.Plo /bin/sh ../../libtool --tag=CXX --mode=link icpc -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -o libMinimizers.la -rpath /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib lbfgs.lo libtool: link: ar cru .libs/libMinimizers.a lbfgs.o libtool: link: ranlib .libs/libMinimizers.a libtool: link: ( cd ".libs" && rm -f "libMinimizers.la" && ln -s "../libMinimizers.la" "libMinimizers.la" ) make[4]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Minimizers' test -z "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib" || /bin/mkdir -p "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib" /bin/sh ../../libtool --mode=install /usr/bin/install -c libMinimizers.la '/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib' libtool: install: /usr/bin/install -c .libs/libMinimizers.lai /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/libMinimizers.la libtool: install: /usr/bin/install -c .libs/libMinimizers.a /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/libMinimizers.a libtool: install: chmod 644 /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/libMinimizers.a libtool: install: ranlib /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/libMinimizers.a libtool: finish: PATH="/usr/mpi/intel/openmpi-1.4.2/bin:/opt/intel/Compiler/11.1/059/bin/intel64:/opt/intel/Compiler/11.1/059/bin/intel64:/opt/hplsf/7.0/linux2.6-glibc2.3-x86_64/etc:/opt/hplsf/7.0/linux2.6-glibc2.3-x86_64/bin:/usr/users/vcojoca/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib64/jvm/jre/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/gwdg/bin:/sbin" ldconfig -n /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib ---------------------------------------------------------------------- Libraries have been installed in: /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/include/mtkpp/Minimizers" || /bin/mkdir -p "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/include/mtkpp/Minimizers" /usr/bin/install -c -m 644 lbfgs.h '/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/include/mtkpp/Minimizers' make[4]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Minimizers' make[3]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Minimizers' Making install in Parsers make[3]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Parsers' /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT parsingException.lo -MD -MP -MF .deps/parsingException.Tpo -c -o parsingException.lo parsingException.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT parsingException.lo -MD -MP -MF .deps/parsingException.Tpo -c parsingException.cpp -o parsingException.o mv -f .deps/parsingException.Tpo .deps/parsingException.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT baseParser.lo -MD -MP -MF .deps/baseParser.Tpo -c -o baseParser.lo baseParser.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT baseParser.lo -MD -MP -MF .deps/baseParser.Tpo -c baseParser.cpp -o baseParser.o mv -f .deps/baseParser.Tpo .deps/baseParser.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT stdLibParser.lo -MD -MP -MF .deps/stdLibParser.Tpo -c -o stdLibParser.lo stdLibParser.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT stdLibParser.lo -MD -MP -MF .deps/stdLibParser.Tpo -c stdLibParser.cpp -o stdLibParser.o mv -f .deps/stdLibParser.Tpo .deps/stdLibParser.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT commLineOptions.lo -MD -MP -MF .deps/commLineOptions.Tpo -c -o commLineOptions.lo commLineOptions.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT commLineOptions.lo -MD -MP -MF .deps/commLineOptions.Tpo -c commLineOptions.cpp -o commLineOptions.o mv -f .deps/commLineOptions.Tpo .deps/commLineOptions.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT molParser.lo -MD -MP -MF .deps/molParser.Tpo -c -o molParser.lo molParser.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT molParser.lo -MD -MP -MF .deps/molParser.Tpo -c molParser.cpp -o molParser.o mv -f .deps/molParser.Tpo .deps/molParser.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT mol2Parser.lo -MD -MP -MF .deps/mol2Parser.Tpo -c -o mol2Parser.lo mol2Parser.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT mol2Parser.lo -MD -MP -MF .deps/mol2Parser.Tpo -c mol2Parser.cpp -o mol2Parser.o mv -f .deps/mol2Parser.Tpo .deps/mol2Parser.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT pdbParser.lo -MD -MP -MF .deps/pdbParser.Tpo -c -o pdbParser.lo pdbParser.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT pdbParser.lo -MD -MP -MF .deps/pdbParser.Tpo -c pdbParser.cpp -o pdbParser.o mv -f .deps/pdbParser.Tpo .deps/pdbParser.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT pamParser.lo -MD -MP -MF .deps/pamParser.Tpo -c -o pamParser.lo pamParser.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT pamParser.lo -MD -MP -MF .deps/pamParser.Tpo -c pamParser.cpp -o pamParser.o mv -f .deps/pamParser.Tpo .deps/pamParser.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT dcParser.lo -MD -MP -MF .deps/dcParser.Tpo -c -o dcParser.lo dcParser.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT dcParser.lo -MD -MP -MF .deps/dcParser.Tpo -c dcParser.cpp -o dcParser.o mv -f .deps/dcParser.Tpo .deps/dcParser.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT sdfParser.lo -MD -MP -MF .deps/sdfParser.Tpo -c -o sdfParser.lo sdfParser.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT sdfParser.lo -MD -MP -MF .deps/sdfParser.Tpo -c sdfParser.cpp -o sdfParser.o mv -f .deps/sdfParser.Tpo .deps/sdfParser.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT xyzParser.lo -MD -MP -MF .deps/xyzParser.Tpo -c -o xyzParser.lo xyzParser.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT xyzParser.lo -MD -MP -MF .deps/xyzParser.Tpo -c xyzParser.cpp -o xyzParser.o mv -f .deps/xyzParser.Tpo .deps/xyzParser.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML 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zmatParser.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT zmatParser.lo -MD -MP -MF .deps/zmatParser.Tpo -c zmatParser.cpp -o zmatParser.o mv -f .deps/zmatParser.Tpo .deps/zmatParser.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT prepParser.lo -MD -MP -MF .deps/prepParser.Tpo -c -o prepParser.lo prepParser.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT prepParser.lo -MD -MP -MF .deps/prepParser.Tpo -c prepParser.cpp -o prepParser.o mv -f .deps/prepParser.Tpo .deps/prepParser.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT acParser.lo -MD -MP -MF .deps/acParser.Tpo -c -o acParser.lo acParser.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT acParser.lo -MD -MP -MF .deps/acParser.Tpo -c acParser.cpp -o acParser.o mv -f .deps/acParser.Tpo .deps/acParser.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT frcmodParser.lo -MD -MP -MF .deps/frcmodParser.Tpo -c -o frcmodParser.lo frcmodParser.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT frcmodParser.lo -MD -MP -MF .deps/frcmodParser.Tpo -c frcmodParser.cpp -o frcmodParser.o mv -f .deps/frcmodParser.Tpo .deps/frcmodParser.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT amberParser.lo -MD -MP -MF .deps/amberParser.Tpo -c -o amberParser.lo amberParser.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT amberParser.lo -MD -MP -MF .deps/amberParser.Tpo -c amberParser.cpp -o amberParser.o mv -f .deps/amberParser.Tpo .deps/amberParser.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT atomTypeParser.lo -MD -MP -MF .deps/atomTypeParser.Tpo -c -o atomTypeParser.lo atomTypeParser.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT atomTypeParser.lo -MD -MP -MF .deps/atomTypeParser.Tpo -c atomTypeParser.cpp -o atomTypeParser.o mv -f .deps/atomTypeParser.Tpo .deps/atomTypeParser.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT gaParser.lo -MD -MP -MF .deps/gaParser.Tpo -c -o gaParser.lo gaParser.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT gaParser.lo -MD -MP -MF .deps/gaParser.Tpo -c gaParser.cpp -o gaParser.o mv -f .deps/gaParser.Tpo .deps/gaParser.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT StringManip.lo -MD -MP -MF .deps/StringManip.Tpo -c -o StringManip.lo StringManip.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT StringManip.lo -MD -MP -MF .deps/StringManip.Tpo -c StringManip.cpp -o StringManip.o mv -f .deps/StringManip.Tpo .deps/StringManip.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT elementParser.lo -MD -MP -MF .deps/elementParser.Tpo -c -o elementParser.lo elementParser.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT elementParser.lo -MD -MP -MF .deps/elementParser.Tpo -c elementParser.cpp -o elementParser.o mv -f .deps/elementParser.Tpo .deps/elementParser.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT paramParser.lo -MD -MP -MF .deps/paramParser.Tpo -c -o paramParser.lo paramParser.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT paramParser.lo -MD -MP -MF .deps/paramParser.Tpo -c paramParser.cpp -o paramParser.o mv -f .deps/paramParser.Tpo .deps/paramParser.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT dMParser.lo -MD -MP -MF .deps/dMParser.Tpo -c -o dMParser.lo dMParser.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT dMParser.lo -MD -MP -MF .deps/dMParser.Tpo -c dMParser.cpp -o dMParser.o mv -f .deps/dMParser.Tpo .deps/dMParser.Plo /bin/sh ../../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT mtkppParser.lo -MD -MP -MF .deps/mtkppParser.Tpo -c -o mtkppParser.lo mtkppParser.cpp libtool: compile: icpc -DHAVE_CONFIG_H -I. -I../.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT mtkppParser.lo -MD -MP -MF .deps/mtkppParser.Tpo -c mtkppParser.cpp -o mtkppParser.o mv -f .deps/mtkppParser.Tpo .deps/mtkppParser.Plo /bin/sh ../../libtool --tag=CXX --mode=link icpc -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -L../../src/Molecule/ -L../../src/Statistics/ -L../../src/Log/ -L../../src/GA/ -L../../src/tinyxml/ -o libParsers.la -rpath /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib parsingException.lo baseParser.lo stdLibParser.lo commLineOptions.lo molParser.lo mol2Parser.lo pdbParser.lo pamParser.lo dcParser.lo sdfParser.lo xyzParser.lo gaussianParser.lo zmatParser.lo prepParser.lo acParser.lo frcmodParser.lo amberParser.lo atomTypeParser.lo gaParser.lo StringManip.lo elementParser.lo paramParser.lo dMParser.lo mtkppParser.lo -lMolecule -lStatistics -lLog -lGA -ltinyxml libtool: link: ar cru .libs/libParsers.a parsingException.o baseParser.o stdLibParser.o commLineOptions.o molParser.o mol2Parser.o pdbParser.o pamParser.o dcParser.o sdfParser.o xyzParser.o gaussianParser.o zmatParser.o prepParser.o acParser.o frcmodParser.o amberParser.o atomTypeParser.o gaParser.o StringManip.o elementParser.o paramParser.o dMParser.o mtkppParser.o libtool: link: ranlib .libs/libParsers.a libtool: link: ( cd ".libs" && rm -f "libParsers.la" && ln -s "../libParsers.la" "libParsers.la" ) make[4]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Parsers' test -z "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib" || /bin/mkdir -p "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib" /bin/sh ../../libtool --mode=install /usr/bin/install -c libParsers.la '/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib' libtool: install: /usr/bin/install -c .libs/libParsers.lai /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/libParsers.la libtool: install: /usr/bin/install -c .libs/libParsers.a /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/libParsers.a libtool: install: chmod 644 /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/libParsers.a libtool: install: ranlib /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/libParsers.a libtool: finish: PATH="/usr/mpi/intel/openmpi-1.4.2/bin:/opt/intel/Compiler/11.1/059/bin/intel64:/opt/intel/Compiler/11.1/059/bin/intel64:/opt/hplsf/7.0/linux2.6-glibc2.3-x86_64/etc:/opt/hplsf/7.0/linux2.6-glibc2.3-x86_64/bin:/usr/users/vcojoca/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib64/jvm/jre/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/gwdg/bin:/sbin" ldconfig -n /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib ---------------------------------------------------------------------- Libraries have been installed in: /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/include/mtkpp/Parsers" || /bin/mkdir -p "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/include/mtkpp/Parsers" /usr/bin/install -c -m 644 parsingException.h stdLibParser.h baseParser.h mtkppParser.h commLineOptions.h inputParser.h molParser.h mol2Parser.h pdbParser.h pamParser.h dcParser.h sdfParser.h xyzParser.h elementParser.h paramParser.h atomTypeParser.h gaParser.h StringManip.h domErrorHandler.h gaussianParser.h zmatParser.h prepParser.h acParser.h frcmodParser.h dMParser.h amberParser.h xmlConvertors.h '/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/include/mtkpp/Parsers' make[4]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Parsers' make[3]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Parsers' Making install in Utils make[3]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Utils' make[4]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Utils' make[4]: Nothing to be done for `install-exec-am'. test -z "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/include/mtkpp/Utils" || /bin/mkdir -p "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/include/mtkpp/Utils" /usr/bin/install -c -m 644 copyright.h printHeader.h constants.h diagonalize.h index.h DivConInterface.h object.h idObject.h inverseMatrix.h deleteItem.h randomNumbers.h vector3d.h '/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/include/mtkpp/Utils' make[4]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Utils' make[3]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Utils' make[3]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src' make[4]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src' make[3]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src' make[2]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src' Making install in tools make[2]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/tools' icpc -DHAVE_CONFIG_H -I. -I.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I../src -I../include -I../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT MTKppConstants.o -MD -MP -MF .deps/MTKppConstants.Tpo -c -o MTKppConstants.o MTKppConstants.cpp mv 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/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Log/.libs/libLog.a /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/GA/.libs/libGA.a /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/tinyxml/.libs/libtinyxml.a -lz make[3]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/tools' test -z "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/bin" || /bin/mkdir -p "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/bin" /bin/sh ../libtool --mode=install /usr/bin/install -c MTKppConstants capActiveSite frcmod2xml func hybrid mmE prep2xml protonator sequenceAligner stats superimposer stdLib2Sdf pdbSearcher MCPB '/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/bin' libtool: install: /usr/bin/install -c MTKppConstants /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/bin/MTKppConstants libtool: install: /usr/bin/install -c capActiveSite /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/bin/capActiveSite libtool: install: /usr/bin/install -c frcmod2xml /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/bin/frcmod2xml libtool: install: /usr/bin/install -c func /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/bin/func libtool: install: /usr/bin/install -c hybrid /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/bin/hybrid libtool: install: /usr/bin/install -c mmE /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/bin/mmE libtool: install: /usr/bin/install -c prep2xml /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/bin/prep2xml libtool: install: /usr/bin/install -c protonator /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/bin/protonator libtool: install: /usr/bin/install -c sequenceAligner /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/bin/sequenceAligner libtool: install: /usr/bin/install -c stats /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/bin/stats libtool: install: /usr/bin/install -c superimposer /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/bin/superimposer libtool: install: /usr/bin/install -c stdLib2Sdf /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/bin/stdLib2Sdf libtool: install: /usr/bin/install -c pdbSearcher /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/bin/pdbSearcher libtool: install: /usr/bin/install -c MCPB /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/bin/MCPB make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/tools' make[2]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/tools' Making install in tests make[2]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/tests' icpc -DHAVE_CONFIG_H -I. -I.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I../src -I../include -I../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT fileFormatsTest.o -MD -MP -MF .deps/fileFormatsTest.Tpo -c -o fileFormatsTest.o fileFormatsTest.cpp mv -f .deps/fileFormatsTest.Tpo .deps/fileFormatsTest.Po /bin/sh ../libtool --tag=CXX --mode=link icpc -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -L../src/Diagnostics -L../src/Molecule -L../src/Log -L../src/Graph -L../src/GA -L../src/Statistics -L../src/Parsers -L../src/tinyxml -o fileFormatsTest fileFormatsTest.o -lDiagnostics -lMolecule -lLog -lGraph -lGA -lStatistics -lParsers -ltinyxml -lz libtool: link: icpc -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -o fileFormatsTest fileFormatsTest.o -L../src/Diagnostics -L../src/Molecule -L../src/Log -L../src/Graph -L../src/GA -L../src/Statistics -L../src/Parsers -L../src/tinyxml -L../../src/Graph/ -L../../src/Log/ -L../../src/Diagnostics/ /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Parsers/.libs/libParsers.a -L../../src/Molecule/ -L../../src/Statistics/ -L../../src/GA/ -L../../src/tinyxml/ /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Molecule/.libs/libMolecule.a 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/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/tinyxml/.libs/libtinyxml.a -lz icpc -DHAVE_CONFIG_H -I. -I.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I../src -I../include -I../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT statsTest.o -MD -MP -MF .deps/statsTest.Tpo -c -o statsTest.o statsTest.cpp mv -f .deps/statsTest.Tpo .deps/statsTest.Po /bin/sh ../libtool --tag=CXX --mode=link icpc -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -L../src/Diagnostics -L../src/Molecule -L../src/Log -L../src/Graph -L../src/GA -L../src/Statistics -L../src/Parsers -L../src/tinyxml -o statsTest statsTest.o -lDiagnostics -lMolecule -lLog -lGraph -lGA -lStatistics -lParsers -ltinyxml -lz libtool: link: icpc -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 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/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Log/.libs/libLog.a /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/GA/.libs/libGA.a /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/tinyxml/.libs/libtinyxml.a -lz icpc -DHAVE_CONFIG_H -I. -I.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I../src -I../include -I../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT ringTest.o -MD -MP -MF .deps/ringTest.Tpo -c -o ringTest.o ringTest.cpp mv -f .deps/ringTest.Tpo .deps/ringTest.Po /bin/sh ../libtool --tag=CXX --mode=link icpc -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -L../src/Diagnostics -L../src/Molecule -L../src/Log -L../src/Graph -L../src/GA -L../src/Statistics -L../src/Parsers -L../src/tinyxml -o ringTest ringTest.o -lDiagnostics -lMolecule -lLog -lGraph -lGA -lStatistics -lParsers -ltinyxml -lz libtool: link: icpc -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -o ringTest ringTest.o -L../src/Diagnostics -L../src/Molecule -L../src/Log -L../src/Graph -L../src/GA -L../src/Statistics -L../src/Parsers -L../src/tinyxml -L../../src/Graph/ -L../../src/Log/ -L../../src/Diagnostics/ /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Parsers/.libs/libParsers.a -L../../src/Molecule/ -L../../src/Statistics/ -L../../src/GA/ -L../../src/tinyxml/ /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Molecule/.libs/libMolecule.a /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Graph/.libs/libGraph.a /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Diagnostics/.libs/libDiagnostics.a /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Statistics/.libs/libStatistics.a /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Log/.libs/libLog.a /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/GA/.libs/libGA.a /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/tinyxml/.libs/libtinyxml.a -lz icpc -DHAVE_CONFIG_H -I. -I.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I../src -I../include -I../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT mmTest.o -MD -MP -MF .deps/mmTest.Tpo -c -o mmTest.o mmTest.cpp mv -f .deps/mmTest.Tpo .deps/mmTest.Po /bin/sh ../libtool --tag=CXX --mode=link icpc -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -L../src/Diagnostics -L../src/Molecule -L../src/Log -L../src/Graph -L../src/GA -L../src/Statistics -L../src/MM -L../src/Parsers -L../src/tinyxml -o mmTest mmTest.o -lDiagnostics -lMolecule -lLog -lGraph -lGA -lStatistics -lMM -lParsers -ltinyxml -lz libtool: link: icpc -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -o mmTest mmTest.o -L../src/Diagnostics -L../src/Molecule -L../src/Log -L../src/Graph -L../src/GA -L../src/Statistics -L../src/MM -L../src/Parsers -L../src/tinyxml -L../../src/Graph/ -L../../src/Log/ -L../../src/Diagnostics/ /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/MM/.libs/libMM.a /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Parsers/.libs/libParsers.a -L../../src/Molecule/ -L../../src/Statistics/ -L../../src/GA/ -L../../src/tinyxml/ /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Molecule/.libs/libMolecule.a /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Graph/.libs/libGraph.a /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Diagnostics/.libs/libDiagnostics.a /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Statistics/.libs/libStatistics.a /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Log/.libs/libLog.a /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/GA/.libs/libGA.a /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/tinyxml/.libs/libtinyxml.a -lz icpc -DHAVE_CONFIG_H -I. -I.. -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/boost-1.38.0 -I/include -I../src -I../include -I../src/eigen3b2 -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT hybridizeTest.o -MD -MP -MF .deps/hybridizeTest.Tpo -c -o hybridizeTest.o hybridizeTest.cpp mv -f .deps/hybridizeTest.Tpo .deps/hybridizeTest.Po /bin/sh ../libtool --tag=CXX --mode=link icpc -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -L../src/Diagnostics -L../src/Molecule -L../src/Log -L../src/Graph -L../src/GA -L../src/Statistics -L../src/Parsers -L../src/tinyxml -o hybridizeTest hybridizeTest.o -lDiagnostics -lMolecule -lLog -lGraph -lGA -lStatistics -lParsers -ltinyxml -lz libtool: link: icpc -std=c++0x -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -o hybridizeTest hybridizeTest.o -L../src/Diagnostics -L../src/Molecule -L../src/Log -L../src/Graph -L../src/GA -L../src/Statistics -L../src/Parsers -L../src/tinyxml -L../../src/Graph/ -L../../src/Log/ -L../../src/Diagnostics/ /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Parsers/.libs/libParsers.a -L../../src/Molecule/ -L../../src/Statistics/ -L../../src/GA/ -L../../src/tinyxml/ /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Molecule/.libs/libMolecule.a /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Graph/.libs/libGraph.a /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Diagnostics/.libs/libDiagnostics.a /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Statistics/.libs/libStatistics.a /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/Log/.libs/libLog.a /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/GA/.libs/libGA.a /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/src/tinyxml/.libs/libtinyxml.a -lz make[3]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/tests' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/tests' make[2]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/tests' make[2]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp' make[3]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/include/mtkpp" || /bin/mkdir -p "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/include/mtkpp" /usr/bin/install -c -m 644 config.h '/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/include/mtkpp' make[3]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp' make[2]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp' make[1]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp' (cd mtkpp/tests && make create ) make[1]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/tests' make[1]: Nothing to be done for `create'. make[1]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/mtkpp/tests' Completed installation of MTK++ Starting installation of AmberTools, version 1.5 serial at Fri May 20 15:01:10 CEST 2011. (cd ucpp-1.3 && make install ) make[1]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/ucpp-1.3' icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DSTAND_ALONE mem.c icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DSTAND_ALONE nhash.c icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DSTAND_ALONE cpp.c icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DSTAND_ALONE lexer.c icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DSTAND_ALONE assert.c icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DSTAND_ALONE macro.c icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DSTAND_ALONE eval.c icc -shared-intel -o ucpp mem.o nhash.o cpp.o lexer.o assert.o macro.o eval.o mv ucpp /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/bin make[1]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/ucpp-1.3' (cd byacc && make install ) make[1]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/byacc' icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o closure.o closure.c icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o error.o error.c icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o lalr.o lalr.c icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o lr0.o lr0.c icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o main.o main.c icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o mkpar.o mkpar.c icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o output.o output.c icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o reader.o reader.c icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o skeleton.o skeleton.c icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o symtab.o symtab.c icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o verbose.o verbose.c icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o warshall.o warshall.c main.o: In function `main': main.c:(.text+0x3d0): warning: the use of `mktemp' is dangerous, better use `mkstemp' mv yacc /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/bin make[1]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/byacc' (cd arpack && make install ); make[1]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/arpack' ifort -c -ip -O3 -xHost -o ivout.o ivout.f ifort -c -ip -O3 -xHost -o dvout.o dvout.f ifort -c -ip -O3 -xHost -o dgetv0.o dgetv0.f ifort -c -ip -O3 -xHost -o dlaqrb.o dlaqrb.f ifort -c -ip -O3 -xHost -o dnaitr.o dnaitr.f ifort -c -ip -O3 -xHost -o dnapps.o dnapps.f ifort -c -ip -O3 -xHost -o dnaup2.o dnaup2.f ifort -c -ip -O3 -xHost -o dnaupd.o dnaupd.f ifort -c -ip -O3 -xHost -o dnconv.o dnconv.f ifort -c -ip -O3 -xHost -o dneigh.o dneigh.f ifort -c -ip -O3 -xHost -o dmout.o dmout.f ifort -c -ip -O3 -xHost -o dneupd.o dneupd.f ifort -c -ip -O3 -xHost -o dngets.o dngets.f ifort -c -ip -O3 -xHost -o dsaitr.o dsaitr.f ifort -c -ip -O3 -xHost -o dsapps.o dsapps.f ifort -c -ip -O3 -xHost -o dsaup2.o dsaup2.f ifort -c -ip -O3 -xHost -o dsaupd.o dsaupd.f ifort -c -ip -O3 -xHost -o dsconv.o dsconv.f ifort -c -ip -O3 -xHost -o dseigt.o dseigt.f ifort -c -ip -O3 -xHost -o dsesrt.o dsesrt.f ifort -c -ip -O3 -xHost -o dseupd.o dseupd.f ifort -c -ip -O3 -xHost -o dsgets.o dsgets.f ifort -c -ip -O3 -xHost -o dsortc.o dsortc.f ifort -c -ip -O3 -xHost -o dsortr.o dsortr.f ifort -c -ip -O3 -xHost -o dstatn.o dstatn.f ifort -c -ip -O3 -xHost -o dstats.o dstats.f ifort -c -ip -O3 -xHost -o dstqrb.o dstqrb.f ifort -c -ip -O3 -xHost -o dsarpack.o dsarpack.f dsarpack.f(199): warning #6371: A jump into a block from outside the block may have occurred. [12] go to (12,18) label -------------^ dsarpack.f(199): warning #6371: A jump into a block from outside the block may have occurred. [18] go to (12,18) label ----------------^ icc -c -ip -O3 -xHost -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o wallclock.o wallclock.c ar rv arpack.a ivout.o dvout.o dgetv0.o dlaqrb.o dnaitr.o dnapps.o dnaup2.o dnaupd.o dnconv.o dneigh.o dmout.o dneupd.o dngets.o dsaitr.o dsapps.o dsaup2.o dsaupd.o dsconv.o dseigt.o dsesrt.o dseupd.o dsgets.o dsortc.o dsortr.o dstatn.o dstats.o dstqrb.o dsarpack.o wallclock.o ar: creating arpack.a a - ivout.o a - dvout.o a - dgetv0.o a - dlaqrb.o a - dnaitr.o a - dnapps.o a - dnaup2.o a - dnaupd.o a - dnconv.o a - dneigh.o a - dmout.o a - dneupd.o a - dngets.o a - dsaitr.o a - dsapps.o a - dsaup2.o a - dsaupd.o a - dsconv.o a - dseigt.o a - dsesrt.o a - dseupd.o a - dsgets.o a - dsortc.o a - dsortr.o a - dstatn.o a - dstats.o a - dstqrb.o a - dsarpack.o a - wallclock.o ranlib arpack.a mv arpack.a /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib make[1]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/arpack' (cd lapack && make skip ) make[1]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/lapack' skipping compilation of LAPACK make[1]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/lapack' (cd blas && make skip ) make[1]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/blas' skipping compilation of BLAS make[1]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/blas' (cd c9x-complex && make skip ) make[1]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/c9x-complex' using built-in (C99) complex.h functionality make[1]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/c9x-complex' (cd etc && make install ) make[1]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/etc' cpp -traditional -P -DMKL -DBINTRAJ ambpdb.f90 > _ambpdb.f90 ifort -c -FR -O0 -o ambpdb.o _ambpdb.f90 cpp -traditional -P -DMKL -DBINTRAJ forFIRSTtype.f90 > _forFIRSTtype.f90 ifort -c -FR -O0 -o forFIRSTtype.o _forFIRSTtype.f90 cpp -traditional -P -DMKL -DBINTRAJ forFIRSTbond.f90 > _forFIRSTbond.f90 ifort -c -FR -O0 -o forFIRSTbond.o _forFIRSTbond.f90 cpp -traditional -P -DMKL -DBINTRAJ forFIRSThbond.f90 > _forFIRSThbond.f90 ifort -c -FR -O0 -o forFIRSThbond.o _forFIRSThbond.f90 cpp -traditional -P -DMKL -DBINTRAJ forFIRSTteth.f90 > _forFIRSTteth.f90 ifort -c -FR -O0 -o forFIRSTteth.o _forFIRSTteth.f90 cpp -traditional -P -DMKL -DBINTRAJ forFIRSToutp.f90 > _forFIRSToutp.f90 ifort -c -FR -O0 -o forFIRSToutp.o _forFIRSToutp.f90 cpp -traditional -P -DMKL -DBINTRAJ forFIRSTsugar.f90 > _forFIRSTsugar.f90 ifort -c -FR -O0 -o forFIRSTsugar.o _forFIRSTsugar.f90 cd ../lib && make sys2.a make[2]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/lib' cpp -traditional -P -DMKL -DBINTRAJ sys.f > _sys.f ifort -c -O0 -o sys.o _sys.f icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o wallclock.o wallclock.c cpp -traditional -P -DMKL -DBINTRAJ random.f > _random.f ifort -c -FR -O0 -o random.o _random.f cpp -traditional -P -DMKL -DBINTRAJ veclib.f > _veclib.f ifort -c -FR -O0 -o veclib.o _veclib.f cpp -traditional -P -DMKL -DBINTRAJ amopen.f > _amopen.f ifort -c -O0 -o amopen.o _amopen.f cpp -traditional -P -DMKL -DBINTRAJ mexit.f > _mexit.f ifort -c -O0 -o mexit.o _mexit.f cpp -traditional -P -DMKL -DBINTRAJ nxtsec.f > _nxtsec.f ifort -c -O0 -o nxtsec.o _nxtsec.f cpp -traditional -P -DMKL -DBINTRAJ rgroup.f > _rgroup.f ifort -c -O0 -o rgroup.o _rgroup.f cpp -traditional -P -DMKL -DBINTRAJ rfree.f > _rfree.f ifort -c -O0 -o rfree.o _rfree.f cpp -traditional -P -DMKL -DBINTRAJ matinv.f > _matinv.f ifort -c -O0 -o matinv.o _matinv.f ar rv sys2.a sys.o wallclock.o random.o veclib.o amopen.o mexit.o nxtsec.o rgroup.o rfree.o matinv.o ar: creating sys2.a a - sys.o a - wallclock.o a - random.o a - veclib.o a - amopen.o a - mexit.o a - nxtsec.o a - rgroup.o a - rfree.o a - matinv.o ranlib sys2.a make[2]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/lib' ifort -o ambpdb \ ambpdb.o forFIRSTtype.o forFIRSTbond.o forFIRSThbond.o forFIRSTteth.o forFIRSToutp.o forFIRSTsugar.o ../lib/sys2.a -shared-intel icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o elsize.o elsize.c icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o elsize elsize.o -lm icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o molsurf.o molsurf.c icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o molsurf molsurf.o -lm cpp -traditional -P -DMKL -DBINTRAJ add_pdb.f90 > _add_pdb.f90 ifort -c -FR -O0 -o add_pdb.o _add_pdb.f90 ifort -o add_pdb \ add_pdb.o ../lib/sys2.a -shared-intel cpp -traditional -P -DMKL -DBINTRAJ lapack.f > _lapack.f ifort -c -O0 -o lapack.o _lapack.f cpp -traditional -P -DMKL -DBINTRAJ resp.f > _resp.f ifort -c -O0 -o resp.o _resp.f ifort -shared-intel \ lapack.o resp.o -o resp ifort -o calcpka calcpka.f90 ./py_setup.sh Using AmberTools' python /bin/mv ambpdb elsize molsurf add_pdb resp calcpka /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/bin /bin/cp lmodprmtop process_mdout.perl process_minout.perl /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/bin /bin/cp convert_charmm_lipid_builder_pdb_to_amber.x /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/bin /bin/cp cpinutil softcore_setup.py extractFrcmod.py /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/bin make[1]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/etc' (cd chamber && make install ) make[1]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/chamber' make chamber make[2]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/chamber' cpp -traditional -P -DMKL -DBINTRAJ psf_strings.f > _psf_strings.f ifort -c -ip -O3 -xHost -FR -o psf_strings.o _psf_strings.f cpp -traditional -P -DMKL -DBINTRAJ cmap.f > _cmap.f ifort -c -ip -O3 -xHost -FR -o cmap.o _cmap.f cpp -traditional -P -DMKL -DBINTRAJ psfprm.f > _psfprm.f ifort -c -ip -O3 -xHost -FR -o psfprm.o _psfprm.f cpp -traditional -P -DMKL -DBINTRAJ molnt.f > _molnt.f ifort -c -ip -O3 -xHost -FR -o molnt.o _molnt.f cpp -traditional -P -DMKL -DBINTRAJ write_prmtop.f > _write_prmtop.f ifort -c -ip -O3 -xHost -FR -o write_prmtop.o _write_prmtop.f cpp -traditional -P -DMKL -DBINTRAJ main.f > _main.f ifort -c -ip -O3 -xHost -FR -o main.o _main.f cpp -traditional -P -DMKL -DBINTRAJ gbradii.f > _gbradii.f ifort -c -ip -O3 -xHost -FR -o gbradii.o _gbradii.f cpp -traditional -P -DMKL -DBINTRAJ sort.f > _sort.f ifort -c -ip -O3 -xHost -FR -o sort.o _sort.f cpp -traditional -P -DMKL -DBINTRAJ mkexcl.f > _mkexcl.f ifort -c -ip -O3 -xHost -FR -o mkexcl.o _mkexcl.f ifort -FR -o chamber main.o psfprm.o psf_strings.o write_prmtop.o gbradii.o sort.o mkexcl.o cmap.o molnt.o \ -shared-intel make[2]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/chamber' mv chamber /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/bin make[1]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/chamber' (cd pbsa && make install ) make[1]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/pbsa' cpp -traditional -P -DMKL -DBINTRAJ dsvdc.f > _dsvdc.f ifort -c -ip -O3 -xHost -FR -o dsvdc.o _dsvdc.f cpp -traditional -P -DMKL -DBINTRAJ egb.f > _egb.f ifort -c -ip -O3 -xHost -FR -o egb.o _egb.f cpp -traditional -P -DMKL -DBINTRAJ timer.f > _timer.f ifort -c -ip -O3 -xHost -FR -o timer.o _timer.f cpp -traditional -P -DMKL -DBINTRAJ decomp.f > _decomp.f ifort -c -ip -O3 -xHost -FR -o decomp.o _decomp.f cpp -traditional -P -DMKL -DBINTRAJ pbsa.f > _pbsa.f ifort -c -ip -O3 -xHost -FR -o pbsa.o _pbsa.f cpp -traditional -P -DMKL -DBINTRAJ sa_driver.f > _sa_driver.f ifort -c -ip -O3 -xHost -FR -o sa_driver.o _sa_driver.f cpp -traditional -P -DMKL -DBINTRAJ pb_nlsolver.f > _pb_nlsolver.f ifort -c -ip -O3 -xHost -FR -o pb_nlsolver.o _pb_nlsolver.f cpp -traditional -P -DMKL -DBINTRAJ pb_lsolver.f > _pb_lsolver.f ifort -c -ip -O3 -xHost -FR -o pb_lsolver.o _pb_lsolver.f cpp -traditional -P -DMKL -DBINTRAJ pb_fddrv.f > _pb_fddrv.f ifort -c -ip -O3 -xHost -FR -o pb_fddrv.o _pb_fddrv.f cpp -traditional -P -DMKL -DBINTRAJ IIM.f > _IIM.f ifort -c -ip -O3 -xHost -FR -o IIM.o _IIM.f cpp -traditional -P -DMKL -DBINTRAJ pb_iimdrv.f > _pb_iimdrv.f ifort -c -ip -O3 -xHost -FR -o pb_iimdrv.o _pb_iimdrv.f cpp -traditional -P -DMKL -DBINTRAJ pb_force.f > _pb_force.f ifort -c -ip -O3 -xHost -FR -o pb_force.o _pb_force.f cpp -traditional -P -DMKL -DBINTRAJ np_force.f > _np_force.f ifort -c -ip -O3 -xHost -FR -o np_force.o _np_force.f cpp -traditional -P -DMKL -DBINTRAJ pb_read.f > _pb_read.f ifort -c -ip -O3 -xHost -FR -o pb_read.o _pb_read.f cpp -traditional -P -DMKL -DBINTRAJ pb_write.f > _pb_write.f ifort -c -ip -O3 -xHost -FR -o pb_write.o _pb_write.f cpp -traditional -P -DMKL -DBINTRAJ getcoor.f > _getcoor.f ifort -c -ip -O3 -xHost -FR -o getcoor.o _getcoor.f cpp -traditional -P -DMKL -DBINTRAJ runmd.f > _runmd.f ifort -c -ip -O3 -xHost -FR -o runmd.o _runmd.f cpp -traditional -P -DMKL -DBINTRAJ runmin.f > _runmin.f ifort -c -ip -O3 -xHost -FR -o runmin.o _runmin.f cpp -traditional -P -DMKL -DBINTRAJ force.f > _force.f ifort -c -ip -O3 -xHost -FR -o force.o _force.f cpp -traditional -P -DMKL -DBINTRAJ pb_init.f > _pb_init.f ifort -c -ip -O3 -xHost -FR -o pb_init.o _pb_init.f cpp -traditional -P -DMKL -DBINTRAJ pb_exmol.f > _pb_exmol.f ifort -c -ip -O3 -xHost -FR -o pb_exmol.o _pb_exmol.f cpp -traditional -P -DMKL -DBINTRAJ pb_mpfrc.f > _pb_mpfrc.f ifort -c -ip -O3 -xHost -FR -o pb_mpfrc.o _pb_mpfrc.f cpp -traditional -P -DMKL -DBINTRAJ pb_direct.f > _pb_direct.f ifort -c -ip -O3 -xHost -FR -o pb_direct.o _pb_direct.f cpp -traditional -P -DMKL -DBINTRAJ pb_list.f > _pb_list.f ifort -c -ip -O3 -xHost -FR -o pb_list.o _pb_list.f cpp -traditional -P -DMKL -DBINTRAJ ene.f > _ene.f ifort -c -ip -O3 -xHost -FR -o ene.o _ene.f cpp -traditional -P -DMKL -DBINTRAJ locmem.f > _locmem.f ifort -c -ip -O3 -xHost -FR -o locmem.o _locmem.f cpp -traditional -P -DMKL -DBINTRAJ myopen.f > _myopen.f ifort -c -ip -O3 -xHost -FR -o myopen.o _myopen.f cpp -traditional -P -DMKL -DBINTRAJ rdparm.f > _rdparm.f ifort -c -ip -O3 -xHost -FR -o rdparm.o _rdparm.f cpp -traditional -P -DMKL -DBINTRAJ rgroup.f > _rgroup.f ifort -c -ip -O3 -xHost -FR -o rgroup.o _rgroup.f cpp -traditional -P -DMKL -DBINTRAJ rfree.f > _rfree.f ifort -c -ip -O3 -xHost -FR -o rfree.o _rfree.f cpp -traditional -P -DMKL -DBINTRAJ debug.f > _debug.f ifort -c -ip -O3 -xHost -FR -o debug.o _debug.f cpp -traditional -P -DMKL -DBINTRAJ coed20.f > _coed20.f ifort -c -ip -O3 -xHost -FR -o coed20.o _coed20.f cpp -traditional -P -DMKL -DBINTRAJ indexg.f > _indexg.f ifort -c -ip -O3 -xHost -FR -o indexg.o _indexg.f cpp -traditional -P -DMKL -DBINTRAJ irre32.f > _irre32.f ifort -c -ip -O3 -xHost -FR -o irre32.o _irre32.f cpp -traditional -P -DMKL -DBINTRAJ phidev.f > _phidev.f ifort -c -ip -O3 -xHost -FR -o phidev.o _phidev.f cpp -traditional -P -DMKL -DBINTRAJ project.f > _project.f ifort -c -ip -O3 -xHost -FR -o project.o _project.f cpp -traditional -P -DMKL -DBINTRAJ qld.f > _qld.f ifort -c -ip -O3 -xHost -FR -o qld.o _qld.f cpp -traditional -P -DMKL -DBINTRAJ coed6.f > _coed6.f ifort -c -ip -O3 -xHost -FR -o coed6.o _coed6.f cpp -traditional -P -DMKL -DBINTRAJ irre31.f > _irre31.f ifort -c -ip -O3 -xHost -FR -o irre31.o _irre31.f cpp -traditional -P -DMKL -DBINTRAJ miniop.f > _miniop.f ifort -c -ip -O3 -xHost -FR -o miniop.o _miniop.f cpp -traditional -P -DMKL -DBINTRAJ prodis.f > _prodis.f ifort -c -ip -O3 -xHost -FR -o prodis.o _prodis.f cpp -traditional -P -DMKL -DBINTRAJ qint.f > _qint.f ifort -c -ip -O3 -xHost -FR -o qint.o _qint.f cpp -traditional -P -DMKL -DBINTRAJ wint.f > _wint.f ifort -c -ip -O3 -xHost -FR -o wint.o _wint.f cpp -traditional -P -DMKL -DBINTRAJ transf.f > _transf.f ifort -c -ip -O3 -xHost -FR -o transf.o _transf.f cpp -traditional -P -DMKL -DBINTRAJ curv.f > _curv.f ifort -c -ip -O3 -xHost -FR -o curv.o _curv.f cpp -traditional -P -DMKL -DBINTRAJ GrToPr.f > _GrToPr.f ifort -c -ip -O3 -xHost -FR -o GrToPr.o _GrToPr.f cpp -traditional -P -DMKL -DBINTRAJ jumps.f > _jumps.f ifort -c -ip -O3 -xHost -FR -o jumps.o _jumps.f cpp -traditional -P -DMKL -DBINTRAJ problem.f > _problem.f ifort -c -ip -O3 -xHost -FR -o problem.o _problem.f cpp -traditional -P -DMKL -DBINTRAJ regular.f > _regular.f ifort -c -ip -O3 -xHost -FR -o regular.o _regular.f cpp -traditional -P -DMKL -DBINTRAJ ctime.f > _ctime.f ifort -c -ip -O3 -xHost -FR -o ctime.o _ctime.f cpp -traditional -P -DMKL -DBINTRAJ gmres.f > _gmres.f ifort -c -ip -O3 -xHost -FR -o gmres.o _gmres.f cpp -traditional -P -DMKL -DBINTRAJ daxpy.f > _daxpy.f ifort -c -ip -O3 -xHost -FR -o daxpy.o _daxpy.f cpp -traditional -P -DMKL -DBINTRAJ ddot.f > _ddot.f ifort -c -ip -O3 -xHost -FR -o ddot.o _ddot.f cpp -traditional -P -DMKL -DBINTRAJ dheqr.f > _dheqr.f ifort -c -ip -O3 -xHost -FR -o dheqr.o _dheqr.f cpp -traditional -P -DMKL -DBINTRAJ dpigmr.f > _dpigmr.f ifort -c -ip -O3 -xHost -FR -o dpigmr.o _dpigmr.f cpp -traditional -P -DMKL -DBINTRAJ dscal.f > _dscal.f ifort -c -ip -O3 -xHost -FR -o dscal.o _dscal.f cpp -traditional -P -DMKL -DBINTRAJ dslui2.f > _dslui2.f ifort -c -ip -O3 -xHost -FR -o dslui2.o _dslui2.f cpp -traditional -P -DMKL -DBINTRAJ dxlcal.f > _dxlcal.f ifort -c -ip -O3 -xHost -FR -o dxlcal.o _dxlcal.f cpp -traditional -P -DMKL -DBINTRAJ dchkw.f > _dchkw.f ifort -c -ip -O3 -xHost -FR -o dchkw.o _dchkw.f cpp -traditional -P -DMKL -DBINTRAJ dgmres.f > _dgmres.f ifort -c -ip -O3 -xHost -FR -o dgmres.o _dgmres.f cpp -traditional -P -DMKL -DBINTRAJ dnrm2.f > _dnrm2.f ifort -c -ip -O3 -xHost -FR -o dnrm2.o _dnrm2.f cpp -traditional -P -DMKL -DBINTRAJ drlcal.f > _drlcal.f ifort -c -ip -O3 -xHost -FR -o drlcal.o _drlcal.f cpp -traditional -P -DMKL -DBINTRAJ dsilus.f > _dsilus.f ifort -c -ip -O3 -xHost -FR -o dsilus.o _dsilus.f cpp -traditional -P -DMKL -DBINTRAJ dslui.f > _dslui.f ifort -c -ip -O3 -xHost -FR -o dslui.o _dslui.f cpp -traditional -P -DMKL -DBINTRAJ isdgmr.f > _isdgmr.f ifort -c -ip -O3 -xHost -FR -o isdgmr.o _isdgmr.f cpp -traditional -P -DMKL -DBINTRAJ dcopy.f > _dcopy.f ifort -c -ip -O3 -xHost -FR -o dcopy.o _dcopy.f cpp -traditional -P -DMKL -DBINTRAJ dhels.f > _dhels.f ifort -c -ip -O3 -xHost -FR -o dhels.o _dhels.f cpp -traditional -P -DMKL -DBINTRAJ dorth.f > _dorth.f ifort -c -ip -O3 -xHost -FR -o dorth.o _dorth.f cpp -traditional -P -DMKL -DBINTRAJ ds2y.f > _ds2y.f ifort -c -ip -O3 -xHost -FR -o ds2y.o _ds2y.f cpp -traditional -P -DMKL -DBINTRAJ dslugm.f > _dslugm.f ifort -c -ip -O3 -xHost -FR -o dslugm.o _dslugm.f cpp -traditional -P -DMKL -DBINTRAJ dsmv.f > _dsmv.f ifort -c -ip -O3 -xHost -FR -o dsmv.o _dsmv.f cpp -traditional -P -DMKL -DBINTRAJ qs2i1d.f > _qs2i1d.f ifort -c -ip -O3 -xHost -FR -o qs2i1d.o _qs2i1d.f cpp -traditional -P -DMKL -DBINTRAJ d1mach.f > _d1mach.f ifort -c -ip -O3 -xHost -FR -o d1mach.o _d1mach.f cpp -traditional -P -DMKL -DBINTRAJ fdump.f > _fdump.f ifort -c -ip -O3 -xHost -FR -o fdump.o _fdump.f cpp -traditional -P -DMKL -DBINTRAJ i1mach.f > _i1mach.f ifort -c -ip -O3 -xHost -FR -o i1mach.o _i1mach.f cpp -traditional -P -DMKL -DBINTRAJ j4save.f > _j4save.f ifort -c -ip -O3 -xHost -FR -o j4save.o _j4save.f cpp -traditional -P -DMKL -DBINTRAJ xercnt.f > _xercnt.f ifort -c -ip -O3 -xHost -FR -o xercnt.o _xercnt.f cpp -traditional -P -DMKL -DBINTRAJ xerhlt.f > _xerhlt.f ifort -c -ip -O3 -xHost -FR -o xerhlt.o _xerhlt.f cpp -traditional -P -DMKL -DBINTRAJ xermsg.f > _xermsg.f ifort -c -ip -O3 -xHost -FR -o xermsg.o _xermsg.f cpp -traditional -P -DMKL -DBINTRAJ xerprn.f > _xerprn.f ifort -c -ip -O3 -xHost -FR -o xerprn.o _xerprn.f cpp -traditional -P -DMKL -DBINTRAJ xersve.f > _xersve.f ifort -c -ip -O3 -xHost -FR -o xersve.o _xersve.f cpp -traditional -P -DMKL -DBINTRAJ xgetua.f > _xgetua.f ifort -c -ip -O3 -xHost -FR -o xgetua.o _xgetua.f cpp -traditional -P -DMKL -DBINTRAJ amg.f > _amg.f ifort -c -ip -O3 -xHost -FR -o amg.o _amg.f cpp -traditional -P -DMKL -DBINTRAJ aux1r5.f > _aux1r5.f ifort -c -ip -O3 -xHost -FR -o aux1r5.o _aux1r5.f cpp -traditional -P -DMKL -DBINTRAJ amg1r5.f > _amg1r5.f ifort -c -ip -O3 -xHost -FR -o amg1r5.o _amg1r5.f cpp -traditional -P -DMKL -DBINTRAJ bicg.f > _bicg.f ifort -c -ip -O3 -xHost -FR -o bicg.o _bicg.f cpp -traditional -P -DMKL -DBINTRAJ dbcg.f > _dbcg.f ifort -c -ip -O3 -xHost -FR -o dbcg.o _dbcg.f cpp -traditional -P -DMKL -DBINTRAJ dslui4.f > _dslui4.f ifort -c -ip -O3 -xHost -FR -o dslui4.o _dslui4.f cpp -traditional -P -DMKL -DBINTRAJ dsluti.f > _dsluti.f ifort -c -ip -O3 -xHost -FR -o dsluti.o _dsluti.f cpp -traditional -P -DMKL -DBINTRAJ dsmtv.f > _dsmtv.f ifort -c -ip -O3 -xHost -FR -o dsmtv.o _dsmtv.f cpp -traditional -P -DMKL -DBINTRAJ dslubc.f > _dslubc.f ifort -c -ip -O3 -xHost -FR -o dslubc.o _dslubc.f cpp -traditional -P -DMKL -DBINTRAJ isdbcg.f > _isdbcg.f ifort -c -ip -O3 -xHost -FR -o isdbcg.o _isdbcg.f cpp -traditional -P -DMKL -DBINTRAJ pb_chkfrc.f > _pb_chkfrc.f ifort -c -ip -O3 -xHost -FR -o pb_chkfrc.o _pb_chkfrc.f cpp -traditional -P -DMKL -DBINTRAJ svdcmp.f > _svdcmp.f ifort -c -ip -O3 -xHost -FR -o svdcmp.o _svdcmp.f cpp -traditional -P -DMKL -DBINTRAJ svbksb.f > _svbksb.f ifort -c -ip -O3 -xHost -FR -o svbksb.o _svbksb.f cpp -traditional -P -DMKL -DBINTRAJ pythag.f > _pythag.f ifort -c -ip -O3 -xHost -FR -o pythag.o _pythag.f cd ../lib && make nxtsec.o random.o make[2]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/lib' make[2]: `nxtsec.o' is up to date. make[2]: `random.o' is up to date. make[2]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/lib' cd ../lapack && make skip make[2]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/lapack' skipping compilation of LAPACK make[2]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/lapack' cd ../blas && make skip make[2]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/blas' skipping compilation of BLAS make[2]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/blas' cd ../arpack && make install make[2]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/arpack' ar rv arpack.a ivout.o dvout.o dgetv0.o dlaqrb.o dnaitr.o dnapps.o dnaup2.o dnaupd.o dnconv.o dneigh.o dmout.o dneupd.o dngets.o dsaitr.o dsapps.o dsaup2.o dsaupd.o dsconv.o dseigt.o dsesrt.o dseupd.o dsgets.o dsortc.o dsortr.o dstatn.o dstats.o dstqrb.o dsarpack.o wallclock.o ar: creating arpack.a a - ivout.o a - dvout.o a - dgetv0.o a - dlaqrb.o a - dnaitr.o a - dnapps.o a - dnaup2.o a - dnaupd.o a - dnconv.o a - dneigh.o a - dmout.o a - dneupd.o a - dngets.o a - dsaitr.o a - dsapps.o a - dsaup2.o a - dsaupd.o a - dsconv.o a - dseigt.o a - dsesrt.o a - dseupd.o a - dsgets.o a - dsortc.o a - dsortr.o a - dstatn.o a - dstats.o a - dstqrb.o a - dsarpack.o a - wallclock.o ranlib arpack.a mv arpack.a /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib make[2]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/arpack' ifort -FR -o pbsa dsvdc.o pbsa.o pb_read.o pb_write.o getcoor.o runmd.o runmin.o force.o pb_init.o sa_driver.o np_force.o pb_force.o pb_fddrv.o pb_iimdrv.o pb_nlsolver.o pb_exmol.o pb_mpfrc.o pb_direct.o pb_list.o timer.o egb.o ene.o locmem.o myopen.o rdparm.o pb_lsolver.o decomp.o rgroup.o rfree.o debug.o coed20.o indexg.o irre32.o phidev.o project.o qld.o coed6.o irre31.o miniop.o prodis.o qint.o wint.o transf.o curv.o GrToPr.o jumps.o problem.o IIM.o regular.o ctime.o gmres.o daxpy.o ddot.o dheqr.o dpigmr.o dscal.o dslui2.o dxlcal.o dchkw.o dgmres.o dnrm2.o drlcal.o dsilus.o dslui.o isdgmr.o dcopy.o dhels.o dorth.o ds2y.o dslugm.o dsmv.o qs2i1d.o d1mach.o fdump.o i1mach.o j4save.o xercnt.o xerhlt.o xermsg.o xerprn.o xersve.o xgetua.o amg.o aux1r5.o amg1r5.o bicg.o dbcg.o dslui4.o dsluti.o dsmtv.o dslubc.o isdbcg.o pb_chkfrc.o svdcmp.o svbksb.o pythag.o \ ../lib/nxtsec.o ../lib/random.o \ /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/arpack.a -Wl,--start-group /opt/intel/mkl/10.2.2.025/lib/em64t/libmkl_intel_lp64.a /opt/intel/mkl/10.2.2.025/lib/em64t/libmkl_sequential.a /opt/intel/mkl/10.2.2.025/lib/em64t/libmkl_core.a -Wl,--end-group -lpthread -lsvml -shared-intel /bin/mv pbsa /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/bin make[1]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/pbsa' (cd antechamber && make install ) make[1]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/antechamber' icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o am1bcc.o am1bcc.c icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -shared-intel am1bcc.o -lm -o am1bcc icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o acdoctor.o acdoctor.c icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -shared-intel acdoctor.o -lm -o acdoctor icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o antechamber.o antechamber.c charge.c(793): warning #181: argument is incompatible with corresponding format string conversion fprintf(stderr, "\nWarning: the read in (with -nc) or calculated net charge of the molecule (%-5.2lf)", netcharge); ^ icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -shared-intel antechamber.o -lm -o antechamber icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o atomtype.o atomtype.c icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -shared-intel atomtype.o -lm -o atomtype icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o bondtype.o bondtype.c icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o ncsu-penalties.o ncsu-penalties.c icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -shared-intel ncsu-penalties.o bondtype.o -lm -o bondtype icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o charmmgen.o charmmgen.c icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -shared-intel charmmgen.o -lm -o charmmgen icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o crdgrow.o crdgrow.c icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -shared-intel crdgrow.o -lm -o crdgrow icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o database.o database.c icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -shared-intel database.o -lm -o database icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o espgen.o espgen.c icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -shared-intel espgen.o -o espgen icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o parmcal.o parmcal.c icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -shared-intel parmcal.o -lm -o parmcal icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o parmchk.o parmchk.c icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -shared-intel parmchk.o -lm -o parmchk icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o prepgen.o prepgen.c icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -shared-intel prepgen.o -lm -o prepgen icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o residuegen.o residuegen.c icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -shared-intel residuegen.o -lm -o residuegen icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o respgen.o respgen.c icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -shared-intel respgen.o -lm -o respgen icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o translate.o translate.c icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -shared-intel translate.o -lm -o translate icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o top2ff.o top2ff.c icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -shared-intel top2ff.o -lm -o top2ff icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o top2mol2.o top2mol2.c icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -shared-intel top2mol2.o -lm -o top2mol2 mv -f am1bcc acdoctor antechamber atomtype bondtype charmmgen crdgrow database espgen parmcal parmchk prepgen residuegen respgen translate top2ff top2mol2 /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/bin make[1]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/antechamber' (cd sqm && make install ) make[1]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/sqm' cpp -traditional -P -DMKL -DBINTRAJ constants.f > _constants.f ifort -c -ip -O3 -xHost -FR -o constants.o _constants.f cpp -traditional -P -DMKL -DBINTRAJ findmask.f > _findmask.f ifort -c -O0 -FR -o findmask.o _findmask.f cpp -traditional -P -DMKL -DBINTRAJ qmmm_qmtheorymodule.f > _qmmm_qmtheorymodule.f ifort -c -O0 -FR -o qmmm_qmtheorymodule.o _qmmm_qmtheorymodule.f cpp -traditional -P -DMKL -DBINTRAJ qmmm_module.f > _qmmm_module.f ifort -c -ip -O3 -xHost -FR -o qmmm_module.o _qmmm_module.f cpp -traditional -P -DMKL -DBINTRAJ qm2_pm6_hof_module.f > _qm2_pm6_hof_module.f ifort -c -O0 -FR -o qm2_pm6_hof_module.o _qm2_pm6_hof_module.f cpp -traditional -P -DMKL -DBINTRAJ sqm.f > _sqm.f ifort -c -O0 -FR -o sqm.o _sqm.f cpp -traditional -P -DMKL -DBINTRAJ xmin.f > _xmin.f ifort -c -O0 -FR -o xmin.o _xmin.f icc -c -DSQM -ip -O3 -xHost -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o xminC.o ../sff/xminC.c cpp -traditional -P -DMKL -DBINTRAJ amopen.f > _amopen.f ifort -c -O0 -FR -o amopen.o _amopen.f cpp -traditional -P -DMKL -DBINTRAJ mexit.f > _mexit.f ifort -c -O0 -FR -o mexit.o _mexit.f cpp -traditional -P -DMKL -DBINTRAJ assert.f > _assert.f ifort -c -O0 -FR -o assert.o _assert.f cpp -traditional -P -DMKL -DBINTRAJ timer_dummy.f > _timer_dummy.f ifort -c -O0 -FR -o timer_dummy.o _timer_dummy.f cpp -traditional -P -DMKL -DBINTRAJ nmlsrc.f > _nmlsrc.f ifort -c -O0 -FR -o nmlsrc.o _nmlsrc.f cpp -traditional -P -DMKL -DBINTRAJ -DSQM qm_print_info.f > _qm_print_info.SQM.f ifort -c -ip -O3 -xHost -FR -o qm_print_info.SQM.o _qm_print_info.SQM.f cpp -traditional -P -DMKL -DBINTRAJ -DSQM qm2_energy.f > _qm2_energy.SQM.f ifort -c -ip -O3 -xHost -FR -o qm2_energy.SQM.o _qm2_energy.SQM.f cpp -traditional -P -DMKL -DBINTRAJ -DSQM qm2_read_nm_and_alloc.f > _qm2_read_nm_and_alloc.SQM.f ifort -c -ip -O3 -xHost -FR -o qm2_read_nm_and_alloc.SQM.o _qm2_read_nm_and_alloc.SQM.f cpp -traditional -P -DMKL -DBINTRAJ qm2_iterator_mod.f > _qm2_iterator_mod.f ifort -c -O0 -FR -o qm2_iterator_mod.o _qm2_iterator_mod.f cpp -traditional -P -DMKL -DBINTRAJ -DSQM qm2_scf.f > _qm2_scf.SQM.f ifort -c -ip -O3 -xHost -FR -o qm2_scf.SQM.o _qm2_scf.SQM.f cpp -traditional -P -DMKL -DBINTRAJ qm2_dftb_module.f > _qm2_dftb_module.f ifort -c -ip -O3 -xHost -FR -o qm2_dftb_module.o _qm2_dftb_module.f cpp -traditional -P -DMKL -DBINTRAJ -DSQM qm2_dftb_scf.f > _qm2_dftb_scf.SQM.f ifort -c -ip -O3 -xHost -FR -o qm2_dftb_scf.SQM.o _qm2_dftb_scf.SQM.f cpp -traditional -P -DMKL -DBINTRAJ qm2_allocate_e_repul.f > _qm2_allocate_e_repul.f ifort -c -ip -O3 -xHost -FR -o qm2_allocate_e_repul.o _qm2_allocate_e_repul.f cpp -traditional -P -DMKL -DBINTRAJ qm2_calc_charges.f > _qm2_calc_charges.f ifort -c -ip -O3 -xHost -FR -o qm2_calc_charges.o _qm2_calc_charges.f cpp -traditional -P -DMKL -DBINTRAJ qm2_calc_rij_and_eqns.f > _qm2_calc_rij_and_eqns.f ifort -c -ip -O3 -xHost -FR -o qm2_calc_rij_and_eqns.o _qm2_calc_rij_and_eqns.f cpp -traditional -P -DMKL -DBINTRAJ qm2_dihed.f > _qm2_dihed.f ifort -c -ip -O3 -xHost -FR -o qm2_dihed.o _qm2_dihed.f cpp -traditional -P -DMKL -DBINTRAJ qm2_fock.f > _qm2_fock.f ifort -c -ip -O3 -xHost -FR -o qm2_fock.o _qm2_fock.f cpp -traditional -P -DMKL -DBINTRAJ qm2_get_qm_forces.f > _qm2_get_qm_forces.f ifort -c -ip -O3 -xHost -FR -o qm2_get_qm_forces.o _qm2_get_qm_forces.f cpp -traditional -P -DMKL -DBINTRAJ qm2_get_qmmm_forces.f > _qm2_get_qmmm_forces.f ifort -c -ip -O3 -xHost -FR -o qm2_get_qmmm_forces.o _qm2_get_qmmm_forces.f cpp -traditional -P -DMKL -DBINTRAJ qm2_h1elec.f > _qm2_h1elec.f ifort -c -ip -O3 -xHost -FR -o qm2_h1elec.o _qm2_h1elec.f cpp -traditional -P -DMKL -DBINTRAJ qm2_hcore_qmqm.f > _qm2_hcore_qmqm.f ifort -c -ip -O3 -xHost -FR -o qm2_hcore_qmqm.o _qm2_hcore_qmqm.f cpp -traditional -P -DMKL -DBINTRAJ qm2_hcore_qmmm.f > _qm2_hcore_qmmm.f ifort -c -ip -O3 -xHost -FR -o qm2_hcore_qmmm.o _qm2_hcore_qmmm.f cpp -traditional -P -DMKL -DBINTRAJ qm2_identify_peptide_links.f > _qm2_identify_peptide_links.f ifort -c -ip -O3 -xHost -FR -o qm2_identify_peptide_links.o _qm2_identify_peptide_links.f cpp -traditional -P -DMKL -DBINTRAJ qm2_load_params_and_allocate.f > _qm2_load_params_and_allocate.f ifort -c -ip -O3 -xHost -FR -o qm2_load_params_and_allocate.o _qm2_load_params_and_allocate.f cpp -traditional -P -DMKL -DBINTRAJ qm2_repp.f > _qm2_repp.f ifort -c -ip -O3 -xHost -FR -o qm2_repp.o _qm2_repp.f cpp -traditional -P -DMKL -DBINTRAJ qm2_rotate_qmqm.f > _qm2_rotate_qmqm.f ifort -c -ip -O3 -xHost -FR -o qm2_rotate_qmqm.o _qm2_rotate_qmqm.f cpp -traditional -P -DMKL -DBINTRAJ qm2_core_core_repulsion.f > _qm2_core_core_repulsion.f ifort -c -ip -O3 -xHost -FR -o qm2_core_core_repulsion.o _qm2_core_core_repulsion.f cpp -traditional -P -DMKL -DBINTRAJ qm2_core_core_repulsion_dxyz.f > _qm2_core_core_repulsion_dxyz.f ifort -c -ip -O3 -xHost -FR -o qm2_core_core_repulsion_dxyz.o _qm2_core_core_repulsion_dxyz.f cpp -traditional -P -DMKL -DBINTRAJ qm2_setup_orb_exp.f > _qm2_setup_orb_exp.f ifort -c -ip -O3 -xHost -FR -o qm2_setup_orb_exp.o _qm2_setup_orb_exp.f cpp -traditional -P -DMKL -DBINTRAJ qm2_smallest_number.f > _qm2_smallest_number.f ifort -c -O0 -FR -o qm2_smallest_number.o _qm2_smallest_number.f cpp -traditional -P -DMKL -DBINTRAJ qm2_fock_predict.f > _qm2_fock_predict.f ifort -c -ip -O3 -xHost -FR -o qm2_fock_predict.o _qm2_fock_predict.f cpp -traditional -P -DMKL -DBINTRAJ qm_gb.f > _qm_gb.f ifort -c -ip -O3 -xHost -FR -o qm_gb.o _qm_gb.f cpp -traditional -P -DMKL -DBINTRAJ qm_zero_charges.f > _qm_zero_charges.f ifort -c -ip -O3 -xHost -FR -o qm_zero_charges.o _qm_zero_charges.f cpp -traditional -P -DMKL -DBINTRAJ qm_assign_atom_types.f > _qm_assign_atom_types.f ifort -c -ip -O3 -xHost -FR -o qm_assign_atom_types.o _qm_assign_atom_types.f cpp -traditional -P -DMKL -DBINTRAJ qm_link_atoms.f > _qm_link_atoms.f ifort -c -ip -O3 -xHost -FR -o qm_link_atoms.o _qm_link_atoms.f cpp -traditional -P -DMKL -DBINTRAJ qm2_print_charges.f > _qm2_print_charges.f ifort -c -ip -O3 -xHost -FR -o qm2_print_charges.o _qm2_print_charges.f cpp -traditional -P -DMKL -DBINTRAJ qm2_dftb_broyden.f > _qm2_dftb_broyden.f ifort -c -ip -O3 -xHost -FR -o qm2_dftb_broyden.o _qm2_dftb_broyden.f cpp -traditional -P -DMKL -DBINTRAJ qm2_dftb_dispersion_egr.f > _qm2_dftb_dispersion_egr.f ifort -c -O0 -FR -o qm2_dftb_dispersion_egr.o _qm2_dftb_dispersion_egr.f cpp -traditional -P -DMKL -DBINTRAJ qm2_dftb_dispersion_params.f > _qm2_dftb_dispersion_params.f ifort -c -ip -O3 -xHost -FR -o qm2_dftb_dispersion_params.o _qm2_dftb_dispersion_params.f cpp -traditional -P -DMKL -DBINTRAJ qm2_dftb_dispersionread.f > _qm2_dftb_dispersionread.f ifort -c -ip -O3 -xHost -FR -o qm2_dftb_dispersionread.o _qm2_dftb_dispersionread.f cpp -traditional -P -DMKL -DBINTRAJ qm2_dftb_energy.f > _qm2_dftb_energy.f ifort -c -ip -O3 -xHost -FR -o qm2_dftb_energy.o _qm2_dftb_energy.f cpp -traditional -P -DMKL -DBINTRAJ qm2_dftb_ewevge.f > _qm2_dftb_ewevge.f ifort -c -ip -O3 -xHost -FR -o qm2_dftb_ewevge.o _qm2_dftb_ewevge.f cpp -traditional -P -DMKL -DBINTRAJ qm2_dftb_externalshift.f > _qm2_dftb_externalshift.f ifort -c -ip -O3 -xHost -FR -o qm2_dftb_externalshift.o _qm2_dftb_externalshift.f cpp -traditional -P -DMKL -DBINTRAJ qm2_dftb_fermi.f > _qm2_dftb_fermi.f ifort -c -ip -O3 -xHost -FR -o qm2_dftb_fermi.o _qm2_dftb_fermi.f cpp -traditional -P -DMKL -DBINTRAJ qm2_dftb_get_qm_forces.f > _qm2_dftb_get_qm_forces.f ifort -c -ip -O3 -xHost -FR -o qm2_dftb_get_qm_forces.o _qm2_dftb_get_qm_forces.f cpp -traditional -P -DMKL -DBINTRAJ qm2_dftb_gamma.f > _qm2_dftb_gamma.f ifort -c -ip -O3 -xHost -FR -o qm2_dftb_gamma.o _qm2_dftb_gamma.f cpp -traditional -P -DMKL -DBINTRAJ qm2_dftb_gammamat.f > _qm2_dftb_gammamat.f ifort -c -ip -O3 -xHost -FR -o qm2_dftb_gammamat.o _qm2_dftb_gammamat.f cpp -traditional -P -DMKL -DBINTRAJ qm2_dftb_get_qmmm_forces.f > _qm2_dftb_get_qmmm_forces.f ifort -c -ip -O3 -xHost -FR -o qm2_dftb_get_qmmm_forces.o _qm2_dftb_get_qmmm_forces.f cpp -traditional -P -DMKL -DBINTRAJ qm2_dftb_gettab.f > _qm2_dftb_gettab.f ifort -c -ip -O3 -xHost -FR -o qm2_dftb_gettab.o _qm2_dftb_gettab.f cpp -traditional -P -DMKL -DBINTRAJ qm2_dftb_load_params.f > _qm2_dftb_load_params.f ifort -c -ip -O3 -xHost -FR -o qm2_dftb_load_params.o _qm2_dftb_load_params.f cpp -traditional -P -DMKL -DBINTRAJ qm2_dftb_mulliken.f > _qm2_dftb_mulliken.f ifort -c -ip -O3 -xHost -FR -o qm2_dftb_mulliken.o _qm2_dftb_mulliken.f cpp -traditional -P -DMKL -DBINTRAJ qm2_dftb_repulsiv.f > _qm2_dftb_repulsiv.f ifort -c -ip -O3 -xHost -FR -o qm2_dftb_repulsiv.o _qm2_dftb_repulsiv.f cpp -traditional -P -DMKL -DBINTRAJ qm2_dftb_self.f > _qm2_dftb_self.f ifort -c -ip -O3 -xHost -FR -o qm2_dftb_self.o _qm2_dftb_self.f cpp -traditional -P -DMKL -DBINTRAJ qm2_dftb_shift.f > _qm2_dftb_shift.f ifort -c -ip -O3 -xHost -FR -o qm2_dftb_shift.o _qm2_dftb_shift.f cpp -traditional -P -DMKL -DBINTRAJ qm2_dftb_skpar.f > _qm2_dftb_skpar.f ifort -c -ip -O3 -xHost -FR -o qm2_dftb_skpar.o _qm2_dftb_skpar.f cpp -traditional -P -DMKL -DBINTRAJ qm2_dftb_slkode.f > _qm2_dftb_slkode.f ifort -c -ip -O3 -xHost -FR -o qm2_dftb_slkode.o _qm2_dftb_slkode.f cpp -traditional -P -DMKL -DBINTRAJ qm2_dftb_slktrafo.f > _qm2_dftb_slktrafo.f ifort -c -ip -O3 -xHost -FR -o qm2_dftb_slktrafo.o _qm2_dftb_slktrafo.f cpp -traditional -P -DMKL -DBINTRAJ qm2_dftb_read_cm3.f > _qm2_dftb_read_cm3.f ifort -c -ip -O3 -xHost -FR -o qm2_dftb_read_cm3.o _qm2_dftb_read_cm3.f cpp -traditional -P -DMKL -DBINTRAJ qm2_dftb_cm3.f > _qm2_dftb_cm3.f ifort -c -ip -O3 -xHost -FR -o qm2_dftb_cm3.o _qm2_dftb_cm3.f cpp -traditional -P -DMKL -DBINTRAJ qm2_dftb_gb.f > _qm2_dftb_gb.f ifort -c -ip -O3 -xHost -FR -o qm2_dftb_gb.o _qm2_dftb_gb.f cpp -traditional -P -DMKL -DBINTRAJ qm2_dftb_3rd_order.f > _qm2_dftb_3rd_order.f ifort -c -ip -O3 -xHost -FR -o qm2_dftb_3rd_order.o _qm2_dftb_3rd_order.f cd ../lapack; make skip make[2]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/lapack' skipping compilation of LAPACK make[2]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/lapack' cd ../blas; make skip make[2]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/blas' skipping compilation of BLAS make[2]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/blas' cd ../arpack && make install make[2]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/arpack' ar rv arpack.a ivout.o dvout.o dgetv0.o dlaqrb.o dnaitr.o dnapps.o dnaup2.o dnaupd.o dnconv.o dneigh.o dmout.o dneupd.o dngets.o dsaitr.o dsapps.o dsaup2.o dsaupd.o dsconv.o dseigt.o dsesrt.o dseupd.o dsgets.o dsortc.o dsortr.o dstatn.o dstats.o dstqrb.o dsarpack.o wallclock.o ar: creating arpack.a a - ivout.o a - dvout.o a - dgetv0.o a - dlaqrb.o a - dnaitr.o a - dnapps.o a - dnaup2.o a - dnaupd.o a - dnconv.o a - dneigh.o a - dmout.o a - dneupd.o a - dngets.o a - dsaitr.o a - dsapps.o a - dsaup2.o a - dsaupd.o a - dsconv.o a - dseigt.o a - dsesrt.o a - dseupd.o a - dsgets.o a - dsortc.o a - dsortr.o a - dstatn.o a - dstats.o a - dstqrb.o a - dsarpack.o a - wallclock.o ranlib arpack.a mv arpack.a /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib make[2]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/arpack' cd ../lib; make sys.a make[2]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/lib' ar rv sys.a sys.o wallclock.o random.o veclib.o ar: creating sys.a a - sys.o a - wallclock.o a - random.o a - veclib.o ranlib sys.a make[2]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/lib' ifort -FR -o sqm constants.o findmask.o sqm.o xmin.o xminC.o amopen.o mexit.o assert.o timer_dummy.o nmlsrc.o qm_print_info.SQM.o qm2_energy.SQM.o qm2_read_nm_and_alloc.SQM.o qm2_scf.SQM.o qm2_dftb_scf.SQM.o qm2_allocate_e_repul.o qm2_calc_charges.o qm2_calc_rij_and_eqns.o qm2_dihed.o qm2_fock.o qm2_get_qm_forces.o qm2_get_qmmm_forces.o qm2_h1elec.o qm2_hcore_qmqm.o qm2_hcore_qmmm.o qm2_identify_peptide_links.o qm2_load_params_and_allocate.o qm2_repp.o qm2_rotate_qmqm.o qm2_core_core_repulsion.o qm2_core_core_repulsion_dxyz.o qm2_iterator_mod.o qm2_setup_orb_exp.o qm2_smallest_number.o qm2_fock_predict.o qm_gb.o qm_zero_charges.o qm_assign_atom_types.o qm_link_atoms.o qm2_print_charges.o qmmm_qmtheorymodule.o qm2_pm6_hof_module.o qm2_dftb_module.o qm2_dftb_broyden.o qm2_dftb_dispersion_egr.o qm2_dftb_dispersion_params.o qm2_dftb_dispersionread.o qm2_dftb_energy.o qm2_dftb_ewevge.o qm2_dftb_externalshift.o qm2_dftb_fermi.o qm2_dftb_get_qm_forces.o qm2_dftb_gamma.o qm2_dftb_gammamat.o qm2_dftb_get_qmmm_forces.o qm2_dftb_gettab.o qm2_dftb_load_params.o qm2_dftb_mulliken.o qm2_dftb_repulsiv.o qm2_dftb_self.o qm2_dftb_shift.o qm2_dftb_skpar.o qm2_dftb_slkode.o qm2_dftb_slktrafo.o qm2_dftb_read_cm3.o qm2_dftb_cm3.o qm2_dftb_gb.o qm2_dftb_3rd_order.o qmmm_module.o \ /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/arpack.a -Wl,--start-group /opt/intel/mkl/10.2.2.025/lib/em64t/libmkl_intel_lp64.a /opt/intel/mkl/10.2.2.025/lib/em64t/libmkl_sequential.a /opt/intel/mkl/10.2.2.025/lib/em64t/libmkl_core.a -Wl,--end-group -lpthread -lsvml ../lib/sys.a -shared-intel mv sqm /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/bin make[1]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/sqm' (cd ptraj && make install ) make[1]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/ptraj' cd pdb && make make[2]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/ptraj/pdb' icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pdbrun.o pdbrun.c icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pdb_read.o pdb_read.c icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pdb_sprntf.o pdb_sprntf.c icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pdb_sscanf.o pdb_sscanf.c icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pdb_write.o pdb_write.c icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o ms.o ms.c ar rv libpdb.a pdbrun.o pdb_read.o pdb_sprntf.o pdb_sscanf.o pdb_write.o ms.o ar: creating libpdb.a a - pdbrun.o a - pdb_read.o a - pdb_sprntf.o a - pdb_sscanf.o a - pdb_write.o a - ms.o ranlib libpdb.a mv libpdb.a /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib make[2]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/ptraj/pdb' cd ../arpack && make make[2]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/arpack' ar rv arpack.a ivout.o dvout.o dgetv0.o dlaqrb.o dnaitr.o dnapps.o dnaup2.o dnaupd.o dnconv.o dneigh.o dmout.o dneupd.o dngets.o dsaitr.o dsapps.o dsaup2.o dsaupd.o dsconv.o dseigt.o dsesrt.o dseupd.o dsgets.o dsortc.o dsortr.o dstatn.o dstats.o dstqrb.o dsarpack.o wallclock.o ar: creating arpack.a a - ivout.o a - dvout.o a - dgetv0.o a - dlaqrb.o a - dnaitr.o a - dnapps.o a - dnaup2.o a - dnaupd.o a - dnconv.o a - dneigh.o a - dmout.o a - dneupd.o a - dngets.o a - dsaitr.o a - dsapps.o a - dsaup2.o a - dsaupd.o a - dsconv.o a - dseigt.o a - dsesrt.o a - dseupd.o a - dsgets.o a - dsortc.o a - dsortr.o a - dstatn.o a - dstats.o a - dstqrb.o a - dsarpack.o a - wallclock.o ranlib arpack.a mv arpack.a /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib make[2]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/arpack' cd ../netcdf/src && make install make[2]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src' Making install in f90 make[3]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/f90' /bin/sh ../libtool --mode=compile ifort -I../libsrc -I. -shared-intel -ip -O3 -xHost -c -o typeSizes.lo typeSizes.f90 ifort -I../libsrc -I. -shared-intel -ip -O3 -xHost -c typeSizes.f90 -o typeSizes.o /bin/sh ../libtool --mode=compile ifort -I../libsrc -I. -shared-intel -ip -O3 -xHost -c -o netcdf.lo netcdf.f90 ifort -I../libsrc -I. -shared-intel -ip -O3 -xHost -c netcdf.f90 -o netcdf.o /bin/sh ../libtool --mode=link ifort -I../libsrc -I. -shared-intel -ip -O3 -xHost -shared-intel -o libnetcdff90.la typeSizes.lo netcdf.lo mkdir .libs ar cru .libs/libnetcdff90.a typeSizes.o netcdf.o ranlib .libs/libnetcdff90.a creating libnetcdff90.la (cd .libs && rm -f libnetcdff90.la && ln -s ../libnetcdff90.la libnetcdff90.la) make[4]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/f90' make[4]: Nothing to be done for `install-exec-am'. test -z "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/share/man/man3" || mkdir -p -- "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/share/man/man3" /usr/bin/install -c -m 644 './netcdf_f90.3' '/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/share/man/man3/netcdf_f90.3' test -z "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/include" || mkdir -p -- "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/include" /usr/bin/install -c -m 644 'typesizes.mod' '/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/include/typesizes.mod' /usr/bin/install -c -m 644 'netcdf.mod' '/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/include/netcdf.mod' make[4]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/f90' make[3]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/f90' Making install in fortran make[3]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/fortran' depbase=`echo fort-attio.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile icc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-attio.lo -MD -MP -MF "$depbase.Tpo" -c -o fort-attio.lo fort-attio.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi icc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-attio.lo -MD -MP -MF .deps/fort-attio.Tpo -c fort-attio.c -o fort-attio.o depbase=`echo fort-control.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile icc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-control.lo -MD -MP -MF "$depbase.Tpo" -c -o fort-control.lo fort-control.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi icc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-control.lo -MD -MP -MF .deps/fort-control.Tpo -c fort-control.c -o fort-control.o depbase=`echo fort-dim.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile icc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-dim.lo -MD -MP -MF "$depbase.Tpo" -c -o fort-dim.lo fort-dim.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi icc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-dim.lo -MD -MP -MF .deps/fort-dim.Tpo -c fort-dim.c -o fort-dim.o depbase=`echo fort-genatt.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile icc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-genatt.lo -MD -MP -MF "$depbase.Tpo" -c -o fort-genatt.lo fort-genatt.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi icc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-genatt.lo -MD -MP -MF .deps/fort-genatt.Tpo -c fort-genatt.c -o fort-genatt.o depbase=`echo fort-geninq.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile icc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-geninq.lo -MD -MP -MF "$depbase.Tpo" -c -o fort-geninq.lo fort-geninq.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi icc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-geninq.lo -MD -MP -MF .deps/fort-geninq.Tpo -c fort-geninq.c -o fort-geninq.o depbase=`echo fort-genvar.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile icc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-genvar.lo -MD -MP -MF "$depbase.Tpo" -c -o fort-genvar.lo fort-genvar.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi icc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-genvar.lo -MD -MP -MF .deps/fort-genvar.Tpo -c fort-genvar.c -o fort-genvar.o depbase=`echo fort-lib.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile icc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-lib.lo -MD -MP -MF "$depbase.Tpo" -c -o fort-lib.lo fort-lib.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi icc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-lib.lo -MD -MP -MF .deps/fort-lib.Tpo -c fort-lib.c -o fort-lib.o depbase=`echo fort-misc.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile icc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-misc.lo -MD -MP -MF "$depbase.Tpo" -c -o fort-misc.lo fort-misc.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi icc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-misc.lo -MD -MP -MF .deps/fort-misc.Tpo -c fort-misc.c -o fort-misc.o depbase=`echo fort-v2compat.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile icc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-v2compat.lo -MD -MP -MF "$depbase.Tpo" -c -o fort-v2compat.lo fort-v2compat.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi icc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-v2compat.lo -MD -MP -MF .deps/fort-v2compat.Tpo -c fort-v2compat.c -o fort-v2compat.o depbase=`echo fort-vario.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile icc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-vario.lo -MD -MP -MF "$depbase.Tpo" -c -o fort-vario.lo fort-vario.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi icc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-vario.lo -MD -MP -MF .deps/fort-vario.Tpo -c fort-vario.c -o fort-vario.o depbase=`echo fort-var1io.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile icc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-var1io.lo -MD -MP -MF "$depbase.Tpo" -c -o fort-var1io.lo fort-var1io.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi icc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-var1io.lo -MD -MP -MF .deps/fort-var1io.Tpo -c fort-var1io.c -o fort-var1io.o depbase=`echo fort-varaio.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile icc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-varaio.lo -MD -MP -MF "$depbase.Tpo" -c -o fort-varaio.lo fort-varaio.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi icc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-varaio.lo -MD -MP -MF .deps/fort-varaio.Tpo -c fort-varaio.c -o fort-varaio.o depbase=`echo fort-varmio.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile icc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-varmio.lo -MD -MP -MF "$depbase.Tpo" -c -o fort-varmio.lo fort-varmio.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi icc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-varmio.lo -MD -MP -MF .deps/fort-varmio.Tpo -c fort-varmio.c -o fort-varmio.o depbase=`echo fort-varsio.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile icc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-varsio.lo -MD -MP -MF "$depbase.Tpo" -c -o fort-varsio.lo fort-varsio.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi icc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-varsio.lo -MD -MP -MF .deps/fort-varsio.Tpo -c fort-varsio.c -o fort-varsio.o /bin/sh ../libtool --tag=CC --mode=link icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -shared-intel -o libnetcdff.la fort-attio.lo fort-control.lo fort-dim.lo fort-genatt.lo fort-geninq.lo fort-genvar.lo fort-lib.lo fort-misc.lo fort-v2compat.lo fort-vario.lo fort-var1io.lo fort-varaio.lo fort-varmio.lo fort-varsio.lo ../f90/libnetcdff90.la mkdir .libs rm -fr .libs/libnetcdff.lax mkdir .libs/libnetcdff.lax rm -fr .libs/libnetcdff.lax/libnetcdff90.a mkdir .libs/libnetcdff.lax/libnetcdff90.a (cd .libs/libnetcdff.lax/libnetcdff90.a && ar x /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/fortran/../f90/.libs/libnetcdff90.a) ar cru .libs/libnetcdff.a fort-attio.o fort-control.o fort-dim.o fort-genatt.o fort-geninq.o fort-genvar.o fort-lib.o fort-misc.o fort-v2compat.o fort-vario.o fort-var1io.o fort-varaio.o fort-varmio.o fort-varsio.o .libs/libnetcdff.lax/libnetcdff90.a/typeSizes.o .libs/libnetcdff.lax/libnetcdff90.a/netcdf.o ranlib .libs/libnetcdff.a rm -fr .libs/libnetcdff.lax creating libnetcdff.la (cd .libs && rm -f libnetcdff.la && ln -s ../libnetcdff.la libnetcdff.la) make[4]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/fortran' test -z "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/lib" || mkdir -p -- "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/lib" test -z "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/include" || mkdir -p -- "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/include" /usr/bin/install -c -m 644 'netcdf.inc' '/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/include/netcdf.inc' test -z "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/share/man/man3" || mkdir -p -- "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/share/man/man3" /usr/bin/install -c -m 644 './netcdf_f77.3' '/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/share/man/man3/netcdf_f77.3' make[4]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/fortran' make[3]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/fortran' Making install in libsrc make[3]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/libsrc' depbase=`echo attr.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile icc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT attr.lo -MD -MP -MF "$depbase.Tpo" -c -o attr.lo attr.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi icc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT attr.lo -MD -MP -MF .deps/attr.Tpo -c attr.c -o attr.o depbase=`echo ncx.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile icc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT ncx.lo -MD -MP -MF "$depbase.Tpo" -c -o ncx.lo ncx.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi icc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT ncx.lo -MD -MP -MF .deps/ncx.Tpo -c ncx.c -o ncx.o depbase=`echo putget.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile icc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT putget.lo -MD -MP -MF "$depbase.Tpo" -c -o putget.lo putget.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi icc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT putget.lo -MD -MP -MF .deps/putget.Tpo -c putget.c -o putget.o depbase=`echo dim.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile icc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT dim.lo -MD -MP -MF "$depbase.Tpo" -c -o dim.lo dim.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi icc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT dim.lo -MD -MP -MF .deps/dim.Tpo -c dim.c -o dim.o depbase=`echo error.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile icc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT error.lo -MD -MP -MF "$depbase.Tpo" -c -o error.lo error.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi icc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT error.lo -MD -MP -MF .deps/error.Tpo -c error.c -o error.o depbase=`echo libvers.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile icc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT libvers.lo -MD -MP -MF "$depbase.Tpo" -c -o libvers.lo libvers.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi icc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT libvers.lo -MD -MP -MF .deps/libvers.Tpo -c libvers.c -o libvers.o depbase=`echo nc.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile icc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT nc.lo -MD -MP -MF "$depbase.Tpo" -c -o nc.lo nc.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi icc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT nc.lo -MD -MP -MF .deps/nc.Tpo -c nc.c -o nc.o depbase=`echo string.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile icc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT string.lo -MD -MP -MF "$depbase.Tpo" -c -o string.lo string.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi icc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT string.lo -MD -MP -MF .deps/string.Tpo -c string.c -o string.o depbase=`echo v1hpg.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile icc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT v1hpg.lo -MD -MP -MF "$depbase.Tpo" -c -o v1hpg.lo v1hpg.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi icc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT v1hpg.lo -MD -MP -MF .deps/v1hpg.Tpo -c v1hpg.c -o v1hpg.o depbase=`echo var.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile icc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT var.lo -MD -MP -MF "$depbase.Tpo" -c -o var.lo var.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi icc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT var.lo -MD -MP -MF .deps/var.Tpo -c var.c -o var.o depbase=`echo posixio.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile icc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT posixio.lo -MD -MP -MF "$depbase.Tpo" -c -o posixio.lo posixio.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi icc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT posixio.lo -MD -MP -MF .deps/posixio.Tpo -c posixio.c -o posixio.o depbase=`echo v2i.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile icc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT v2i.lo -MD -MP -MF "$depbase.Tpo" -c -o v2i.lo v2i.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi icc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT v2i.lo -MD -MP -MF .deps/v2i.Tpo -c v2i.c -o v2i.o /bin/sh ../libtool --tag=CC --mode=link icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -shared-intel -o libnetcdf2.la v2i.lo mkdir .libs ar cru .libs/libnetcdf2.a v2i.o ranlib .libs/libnetcdf2.a creating libnetcdf2.la (cd .libs && rm -f libnetcdf2.la && ln -s ../libnetcdf2.la libnetcdf2.la) /bin/sh ../libtool --tag=CC --mode=link icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -shared-intel -o libnetcdf.la -rpath /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/lib -version-info 4:0:0 -no-undefined attr.lo ncx.lo putget.lo dim.lo error.lo libvers.lo nc.lo string.lo v1hpg.lo var.lo posixio.lo libnetcdf2.la ../fortran/libnetcdff.la rm -fr .libs/libnetcdf.lax mkdir .libs/libnetcdf.lax rm -fr .libs/libnetcdf.lax/libnetcdf2.a mkdir .libs/libnetcdf.lax/libnetcdf2.a (cd .libs/libnetcdf.lax/libnetcdf2.a && ar x /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/libsrc/./.libs/libnetcdf2.a) rm -fr .libs/libnetcdf.lax/libnetcdff.a mkdir .libs/libnetcdf.lax/libnetcdff.a (cd .libs/libnetcdf.lax/libnetcdff.a && ar x /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/libsrc/../fortran/.libs/libnetcdff.a) ar cru .libs/libnetcdf.a attr.o ncx.o putget.o dim.o error.o libvers.o nc.o string.o v1hpg.o var.o posixio.o .libs/libnetcdf.lax/libnetcdf2.a/v2i.o .libs/libnetcdf.lax/libnetcdff.a/fort-var1io.o .libs/libnetcdf.lax/libnetcdff.a/typeSizes.o .libs/libnetcdf.lax/libnetcdff.a/fort-lib.o .libs/libnetcdf.lax/libnetcdff.a/fort-misc.o .libs/libnetcdf.lax/libnetcdff.a/fort-dim.o .libs/libnetcdf.lax/libnetcdff.a/fort-vario.o .libs/libnetcdf.lax/libnetcdff.a/fort-attio.o .libs/libnetcdf.lax/libnetcdff.a/fort-varaio.o .libs/libnetcdf.lax/libnetcdff.a/fort-genatt.o .libs/libnetcdf.lax/libnetcdff.a/netcdf.o .libs/libnetcdf.lax/libnetcdff.a/fort-geninq.o .libs/libnetcdf.lax/libnetcdff.a/fort-varmio.o .libs/libnetcdf.lax/libnetcdff.a/fort-v2compat.o .libs/libnetcdf.lax/libnetcdff.a/fort-varsio.o .libs/libnetcdf.lax/libnetcdff.a/fort-genvar.o .libs/libnetcdf.lax/libnetcdff.a/fort-control.o ranlib .libs/libnetcdf.a rm -fr .libs/libnetcdf.lax creating libnetcdf.la (cd .libs && rm -f libnetcdf.la && ln -s ../libnetcdf.la libnetcdf.la) make[4]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/libsrc' test -z "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/lib" || mkdir -p -- "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/lib" /bin/sh ../libtool --mode=install /usr/bin/install -c 'libnetcdf.la' '/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/lib/libnetcdf.la' /usr/bin/install -c .libs/libnetcdf.lai /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/lib/libnetcdf.la /usr/bin/install -c .libs/libnetcdf.a /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/lib/libnetcdf.a chmod 644 /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/lib/libnetcdf.a ranlib /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/lib/libnetcdf.a PATH="$PATH:/sbin" ldconfig -n /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/lib ---------------------------------------------------------------------- Libraries have been installed in: /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,--rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/include" || mkdir -p -- "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/include" /usr/bin/install -c -m 644 'netcdf.h' '/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/include/netcdf.h' test -z "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/share/man/man3" || mkdir -p -- "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/share/man/man3" /usr/bin/install -c -m 644 './netcdf.3' '/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/share/man/man3/netcdf.3' make[4]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/libsrc' make[3]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/libsrc' Making install in nctest make[3]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/nctest' make[4]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/nctest' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/nctest' make[3]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/nctest' Making install in ncgen make[3]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/ncgen' depbase=`echo main.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`; \ if icc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -I.. -I../libsrc -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT main.o -MD -MP -MF "$depbase.Tpo" -c -o main.o main.c; \ then mv -f "$depbase.Tpo" "$depbase.Po"; else rm -f "$depbase.Tpo"; exit 1; fi depbase=`echo load.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`; \ if icc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -I.. -I../libsrc -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT load.o -MD -MP -MF "$depbase.Tpo" -c -o load.o load.c; \ then mv -f "$depbase.Tpo" "$depbase.Po"; else rm -f "$depbase.Tpo"; exit 1; fi depbase=`echo ncgentab.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`; \ if icc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -I.. -I../libsrc -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT ncgentab.o -MD -MP -MF "$depbase.Tpo" -c -o ncgentab.o ncgentab.c; \ then mv -f "$depbase.Tpo" "$depbase.Po"; else rm -f "$depbase.Tpo"; exit 1; fi depbase=`echo escapes.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`; \ if icc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -I.. -I../libsrc -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT escapes.o -MD -MP -MF "$depbase.Tpo" -c -o escapes.o escapes.c; \ then mv -f "$depbase.Tpo" "$depbase.Po"; else rm -f "$depbase.Tpo"; exit 1; fi depbase=`echo getfill.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`; \ if icc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -I.. -I../libsrc -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT getfill.o -MD -MP -MF "$depbase.Tpo" -c -o getfill.o getfill.c; \ then mv -f "$depbase.Tpo" "$depbase.Po"; else rm -f "$depbase.Tpo"; exit 1; fi depbase=`echo init.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`; \ if icc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -I.. -I../libsrc -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT init.o -MD -MP -MF "$depbase.Tpo" -c -o init.o init.c; \ then mv -f "$depbase.Tpo" "$depbase.Po"; else rm -f "$depbase.Tpo"; exit 1; fi depbase=`echo genlib.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`; \ if icc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -I.. -I../libsrc -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT genlib.o -MD -MP -MF "$depbase.Tpo" -c -o genlib.o genlib.c; \ then mv -f "$depbase.Tpo" "$depbase.Po"; else rm -f "$depbase.Tpo"; exit 1; fi /bin/sh ../libtool --tag=CC --mode=link icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -shared-intel -o ncgen main.o load.o ncgentab.o escapes.o getfill.o init.o genlib.o ../libsrc/libnetcdf.la mkdir .libs icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -shared-intel -o ncgen main.o load.o ncgentab.o escapes.o getfill.o init.o genlib.o ../libsrc/.libs/libnetcdf.a make[4]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/ncgen' test -z "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/bin" || mkdir -p -- "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/bin" /bin/sh ../libtool --mode=install /usr/bin/install -c 'ncgen' '/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/bin/ncgen' /usr/bin/install -c ncgen /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/bin/ncgen test -z "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/share/man/man1" || mkdir -p -- "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/share/man/man1" /usr/bin/install -c -m 644 './ncgen.1' '/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/share/man/man1/ncgen.1' make[4]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/ncgen' make[3]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/ncgen' Making install in ncdump make[3]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/ncdump' depbase=`echo ncdump.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`; \ if icc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -I../libsrc -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT ncdump.o -MD -MP -MF "$depbase.Tpo" -c -o ncdump.o ncdump.c; \ then mv -f "$depbase.Tpo" "$depbase.Po"; else rm -f "$depbase.Tpo"; exit 1; fi depbase=`echo vardata.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`; \ if icc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -I../libsrc -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT vardata.o -MD -MP -MF "$depbase.Tpo" -c -o vardata.o vardata.c; \ then mv -f "$depbase.Tpo" "$depbase.Po"; else rm -f "$depbase.Tpo"; exit 1; fi depbase=`echo dumplib.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`; \ if icc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -I../libsrc -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT dumplib.o -MD -MP -MF "$depbase.Tpo" -c -o dumplib.o dumplib.c; \ then mv -f "$depbase.Tpo" "$depbase.Po"; else rm -f "$depbase.Tpo"; exit 1; fi /bin/sh ../libtool --tag=CC --mode=link icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -shared-intel -o ncdump ncdump.o vardata.o dumplib.o -lm ../libsrc/libnetcdf.la mkdir .libs icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -shared-intel -o ncdump ncdump.o vardata.o dumplib.o -lm ../libsrc/.libs/libnetcdf.a make[4]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/ncdump' test -z "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/bin" || mkdir -p -- "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/bin" /bin/sh ../libtool --mode=install /usr/bin/install -c 'ncdump' '/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/bin/ncdump' /usr/bin/install -c ncdump /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/bin/ncdump test -z "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/share/man/man1" || mkdir -p -- "/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/share/man/man1" /usr/bin/install -c -m 644 './ncdump.1' '/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/share/man/man1/ncdump.1' make[4]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/ncdump' make[3]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/ncdump' Making install in nf_test make[3]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/nf_test' make[4]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/nf_test' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/nf_test' make[3]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/nf_test' Making install in nc_test make[3]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/nc_test' make[4]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/nc_test' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/nc_test' make[3]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/nc_test' Making install in examples make[3]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/examples' Making install in C make[4]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/examples/C' make[5]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/examples/C' make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[5]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/examples/C' make[4]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/examples/C' Making install in CDL make[4]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/examples/CDL' make[5]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/examples/CDL' make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[5]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/examples/CDL' make[4]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/examples/CDL' Making install in F77 make[4]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/examples/F77' make[5]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/examples/F77' make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[5]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/examples/F77' make[4]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/examples/F77' Making install in F90 make[4]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/examples/F90' make install-am make[5]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/examples/F90' make[6]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/examples/F90' make[6]: Nothing to be done for `install-exec-am'. make[6]: Nothing to be done for `install-data-am'. make[6]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/examples/F90' make[5]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/examples/F90' make[4]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/examples/F90' make[4]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/examples' make[5]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/examples' make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[5]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/examples' make[4]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/examples' make[3]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src/examples' make[3]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src' make[4]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src' make[4]: Nothing to be done for `install-exec-am'. make install-data-hook make[5]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src' +-------------------------------------------------------------+ | CAUTION: | | | | If you have not already run "make check", then we strongly | | recommend you do so. It does not take very long. | | | | Before using netCDF to store important data, test your | | build with "make check". | | | | NetCDF is tested nightly on many platforms at Unidata | | but your platform is probably different in some ways. | | | | If any tests fail, please see the netCDF web site: | | http://www.unidata.ucar.edu/software/netcdf/ | | | | NetCDF is developed and maintained at the Unidata Program | | Center. Unidata provides a broad array of data and software | | tools for use in geoscience education and research. | | http://www.unidata.ucar.edu | +-------------------------------------------------------------+ make[5]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src' make[4]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src' make[3]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src' make[2]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/netcdf/src' icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o main.o main.c clusterLib.h(915): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) BASEClusterFree, ^ clusterLib.h(916): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusterFindCentroid ^ clusterLib.h(920): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) BASEClusteringFree, ^ clusterLib.h(921): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringMergeClusters, ^ clusterLib.h(922): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringSplitCluster, ^ clusterLib.h(923): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringGetNewCluster, ^ clusterLib.h(924): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringFindKmeansSeeds, ^ clusterLib.h(925): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterLinkage, ^ clusterLib.h(926): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterMeans, ^ clusterLib.h(927): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterCobweb, ^ clusterLib.h(928): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringNewCobwebCluster, ^ clusterLib.h(929): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringCobwebAddNewFrame, ^ clusterLib.h(930): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASECobwebClusterComputeMeans, ^ clusterLib.h(931): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringCobwebClusterFree, ^ clusterLib.h(932): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASECobwebClusterCopyMeans, ^ clusterLib.h(933): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringSOMLearn, ^ clusterLib.h(934): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringOutputStatus, ^ cluster.h(330): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) PtrajClusterFree, ^ cluster.h(331): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusterFindCentroid ^ cluster.h(339): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) PtrajClusteringFree, ^ cluster.h(340): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringMergeClusters, ^ cluster.h(341): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringSplitCluster, ^ cluster.h(342): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringGetNewCluster, ^ cluster.h(343): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringFindKmeansSeeds, ^ cluster.h(344): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringClusterLinkage, ^ cluster.h(345): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringClusterMeans, ^ cluster.h(346): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterCobweb, ^ cluster.h(347): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringNewCobwebCluster, ^ cluster.h(348): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebAddNewFrame, ^ cluster.h(349): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajCobwebClusterComputeMeans, ^ cluster.h(350): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebClusterFree, ^ cluster.h(351): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebCopyMeans, ^ cluster.h(352): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringSOMLearn, ^ cluster.h(353): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringOutputStatus ^ icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o rdparm.o rdparm.c clusterLib.h(915): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) BASEClusterFree, ^ clusterLib.h(916): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusterFindCentroid ^ clusterLib.h(920): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) BASEClusteringFree, ^ clusterLib.h(921): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringMergeClusters, ^ clusterLib.h(922): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringSplitCluster, ^ clusterLib.h(923): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringGetNewCluster, ^ clusterLib.h(924): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringFindKmeansSeeds, ^ clusterLib.h(925): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterLinkage, ^ clusterLib.h(926): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterMeans, ^ clusterLib.h(927): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterCobweb, ^ clusterLib.h(928): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringNewCobwebCluster, ^ clusterLib.h(929): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringCobwebAddNewFrame, ^ clusterLib.h(930): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASECobwebClusterComputeMeans, ^ clusterLib.h(931): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringCobwebClusterFree, ^ clusterLib.h(932): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASECobwebClusterCopyMeans, ^ clusterLib.h(933): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringSOMLearn, ^ clusterLib.h(934): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringOutputStatus, ^ cluster.h(330): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) PtrajClusterFree, ^ cluster.h(331): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusterFindCentroid ^ cluster.h(339): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) PtrajClusteringFree, ^ cluster.h(340): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringMergeClusters, ^ cluster.h(341): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringSplitCluster, ^ cluster.h(342): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringGetNewCluster, ^ cluster.h(343): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringFindKmeansSeeds, ^ cluster.h(344): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringClusterLinkage, ^ cluster.h(345): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringClusterMeans, ^ cluster.h(346): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterCobweb, ^ cluster.h(347): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringNewCobwebCluster, ^ cluster.h(348): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebAddNewFrame, ^ cluster.h(349): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajCobwebClusterComputeMeans, ^ cluster.h(350): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebClusterFree, ^ cluster.h(351): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebCopyMeans, ^ cluster.h(352): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringSOMLearn, ^ cluster.h(353): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringOutputStatus ^ icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o dispatch.o dispatch.c clusterLib.h(915): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) BASEClusterFree, ^ clusterLib.h(916): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusterFindCentroid ^ clusterLib.h(920): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) BASEClusteringFree, ^ clusterLib.h(921): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringMergeClusters, ^ clusterLib.h(922): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringSplitCluster, ^ clusterLib.h(923): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringGetNewCluster, ^ clusterLib.h(924): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringFindKmeansSeeds, ^ clusterLib.h(925): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterLinkage, ^ clusterLib.h(926): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterMeans, ^ clusterLib.h(927): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterCobweb, ^ clusterLib.h(928): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringNewCobwebCluster, ^ clusterLib.h(929): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringCobwebAddNewFrame, ^ clusterLib.h(930): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASECobwebClusterComputeMeans, ^ clusterLib.h(931): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringCobwebClusterFree, ^ clusterLib.h(932): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASECobwebClusterCopyMeans, ^ clusterLib.h(933): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringSOMLearn, ^ clusterLib.h(934): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringOutputStatus, ^ cluster.h(330): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) PtrajClusterFree, ^ cluster.h(331): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusterFindCentroid ^ cluster.h(339): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) PtrajClusteringFree, ^ cluster.h(340): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringMergeClusters, ^ cluster.h(341): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringSplitCluster, ^ cluster.h(342): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringGetNewCluster, ^ cluster.h(343): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringFindKmeansSeeds, ^ cluster.h(344): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringClusterLinkage, ^ cluster.h(345): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringClusterMeans, ^ cluster.h(346): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterCobweb, ^ cluster.h(347): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringNewCobwebCluster, ^ cluster.h(348): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebAddNewFrame, ^ cluster.h(349): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajCobwebClusterComputeMeans, ^ cluster.h(350): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebClusterFree, ^ cluster.h(351): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebCopyMeans, ^ cluster.h(352): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringSOMLearn, ^ cluster.h(353): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringOutputStatus ^ icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o help.o help.c clusterLib.h(915): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) BASEClusterFree, ^ clusterLib.h(916): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusterFindCentroid ^ clusterLib.h(920): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) BASEClusteringFree, ^ clusterLib.h(921): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringMergeClusters, ^ clusterLib.h(922): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringSplitCluster, ^ clusterLib.h(923): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringGetNewCluster, ^ clusterLib.h(924): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringFindKmeansSeeds, ^ clusterLib.h(925): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterLinkage, ^ clusterLib.h(926): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterMeans, ^ clusterLib.h(927): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterCobweb, ^ clusterLib.h(928): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringNewCobwebCluster, ^ clusterLib.h(929): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringCobwebAddNewFrame, ^ clusterLib.h(930): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASECobwebClusterComputeMeans, ^ clusterLib.h(931): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringCobwebClusterFree, ^ clusterLib.h(932): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASECobwebClusterCopyMeans, ^ clusterLib.h(933): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringSOMLearn, ^ clusterLib.h(934): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringOutputStatus, ^ cluster.h(330): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) PtrajClusterFree, ^ cluster.h(331): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusterFindCentroid ^ cluster.h(339): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) PtrajClusteringFree, ^ cluster.h(340): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringMergeClusters, ^ cluster.h(341): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringSplitCluster, ^ cluster.h(342): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringGetNewCluster, ^ cluster.h(343): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringFindKmeansSeeds, ^ cluster.h(344): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringClusterLinkage, ^ cluster.h(345): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringClusterMeans, ^ cluster.h(346): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterCobweb, ^ cluster.h(347): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringNewCobwebCluster, ^ cluster.h(348): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebAddNewFrame, ^ cluster.h(349): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajCobwebClusterComputeMeans, ^ cluster.h(350): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebClusterFree, ^ cluster.h(351): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebCopyMeans, ^ cluster.h(352): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringSOMLearn, ^ cluster.h(353): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringOutputStatus ^ icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o utility.o utility.c icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o second.o second.c icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o io.o io.c clusterLib.h(915): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) BASEClusterFree, ^ clusterLib.h(916): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusterFindCentroid ^ clusterLib.h(920): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) BASEClusteringFree, ^ clusterLib.h(921): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringMergeClusters, ^ clusterLib.h(922): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringSplitCluster, ^ clusterLib.h(923): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringGetNewCluster, ^ clusterLib.h(924): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringFindKmeansSeeds, ^ clusterLib.h(925): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterLinkage, ^ clusterLib.h(926): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterMeans, ^ clusterLib.h(927): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterCobweb, ^ clusterLib.h(928): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringNewCobwebCluster, ^ clusterLib.h(929): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringCobwebAddNewFrame, ^ clusterLib.h(930): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASECobwebClusterComputeMeans, ^ clusterLib.h(931): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringCobwebClusterFree, ^ clusterLib.h(932): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASECobwebClusterCopyMeans, ^ clusterLib.h(933): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringSOMLearn, ^ clusterLib.h(934): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringOutputStatus, ^ cluster.h(330): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) PtrajClusterFree, ^ cluster.h(331): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusterFindCentroid ^ cluster.h(339): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) PtrajClusteringFree, ^ cluster.h(340): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringMergeClusters, ^ cluster.h(341): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringSplitCluster, ^ cluster.h(342): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringGetNewCluster, ^ cluster.h(343): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringFindKmeansSeeds, ^ cluster.h(344): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringClusterLinkage, ^ cluster.h(345): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringClusterMeans, ^ cluster.h(346): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterCobweb, ^ cluster.h(347): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringNewCobwebCluster, ^ cluster.h(348): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebAddNewFrame, ^ cluster.h(349): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajCobwebClusterComputeMeans, ^ cluster.h(350): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebClusterFree, ^ cluster.h(351): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebCopyMeans, ^ cluster.h(352): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringSOMLearn, ^ cluster.h(353): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringOutputStatus ^ icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o trajectory.o trajectory.c clusterLib.h(915): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) BASEClusterFree, ^ clusterLib.h(916): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusterFindCentroid ^ clusterLib.h(920): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) BASEClusteringFree, ^ clusterLib.h(921): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringMergeClusters, ^ clusterLib.h(922): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringSplitCluster, ^ clusterLib.h(923): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringGetNewCluster, ^ clusterLib.h(924): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringFindKmeansSeeds, ^ clusterLib.h(925): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterLinkage, ^ clusterLib.h(926): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterMeans, ^ clusterLib.h(927): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterCobweb, ^ clusterLib.h(928): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringNewCobwebCluster, ^ clusterLib.h(929): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringCobwebAddNewFrame, ^ clusterLib.h(930): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASECobwebClusterComputeMeans, ^ clusterLib.h(931): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringCobwebClusterFree, ^ clusterLib.h(932): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASECobwebClusterCopyMeans, ^ clusterLib.h(933): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringSOMLearn, ^ clusterLib.h(934): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringOutputStatus, ^ cluster.h(330): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) PtrajClusterFree, ^ cluster.h(331): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusterFindCentroid ^ cluster.h(339): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) PtrajClusteringFree, ^ cluster.h(340): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringMergeClusters, ^ cluster.h(341): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringSplitCluster, ^ cluster.h(342): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringGetNewCluster, ^ cluster.h(343): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringFindKmeansSeeds, ^ cluster.h(344): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringClusterLinkage, ^ cluster.h(345): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringClusterMeans, ^ cluster.h(346): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterCobweb, ^ cluster.h(347): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringNewCobwebCluster, ^ cluster.h(348): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebAddNewFrame, ^ cluster.h(349): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajCobwebClusterComputeMeans, ^ cluster.h(350): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebClusterFree, ^ cluster.h(351): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebCopyMeans, ^ cluster.h(352): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringSOMLearn, ^ cluster.h(353): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringOutputStatus ^ icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o netcdf_ptraj.o netcdf_ptraj.c clusterLib.h(915): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) BASEClusterFree, ^ clusterLib.h(916): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusterFindCentroid ^ clusterLib.h(920): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) BASEClusteringFree, ^ clusterLib.h(921): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringMergeClusters, ^ clusterLib.h(922): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringSplitCluster, ^ clusterLib.h(923): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringGetNewCluster, ^ clusterLib.h(924): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringFindKmeansSeeds, ^ clusterLib.h(925): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterLinkage, ^ clusterLib.h(926): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterMeans, ^ clusterLib.h(927): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterCobweb, ^ clusterLib.h(928): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringNewCobwebCluster, ^ clusterLib.h(929): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringCobwebAddNewFrame, ^ clusterLib.h(930): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASECobwebClusterComputeMeans, ^ clusterLib.h(931): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringCobwebClusterFree, ^ clusterLib.h(932): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASECobwebClusterCopyMeans, ^ clusterLib.h(933): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringSOMLearn, ^ clusterLib.h(934): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringOutputStatus, ^ cluster.h(330): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) PtrajClusterFree, ^ cluster.h(331): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusterFindCentroid ^ cluster.h(339): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) PtrajClusteringFree, ^ cluster.h(340): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringMergeClusters, ^ cluster.h(341): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringSplitCluster, ^ cluster.h(342): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringGetNewCluster, ^ cluster.h(343): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringFindKmeansSeeds, ^ cluster.h(344): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringClusterLinkage, ^ cluster.h(345): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringClusterMeans, ^ cluster.h(346): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterCobweb, ^ cluster.h(347): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringNewCobwebCluster, ^ cluster.h(348): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebAddNewFrame, ^ cluster.h(349): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajCobwebClusterComputeMeans, ^ cluster.h(350): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebClusterFree, ^ cluster.h(351): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebCopyMeans, ^ cluster.h(352): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringSOMLearn, ^ cluster.h(353): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringOutputStatus ^ icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o parallel_ptraj.o parallel_ptraj.c clusterLib.h(915): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) BASEClusterFree, ^ clusterLib.h(916): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusterFindCentroid ^ clusterLib.h(920): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) BASEClusteringFree, ^ clusterLib.h(921): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringMergeClusters, ^ clusterLib.h(922): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringSplitCluster, ^ clusterLib.h(923): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringGetNewCluster, ^ clusterLib.h(924): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringFindKmeansSeeds, ^ clusterLib.h(925): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterLinkage, ^ clusterLib.h(926): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterMeans, ^ clusterLib.h(927): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterCobweb, ^ clusterLib.h(928): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringNewCobwebCluster, ^ clusterLib.h(929): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringCobwebAddNewFrame, ^ clusterLib.h(930): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASECobwebClusterComputeMeans, ^ clusterLib.h(931): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringCobwebClusterFree, ^ clusterLib.h(932): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASECobwebClusterCopyMeans, ^ clusterLib.h(933): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringSOMLearn, ^ clusterLib.h(934): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringOutputStatus, ^ cluster.h(330): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) PtrajClusterFree, ^ cluster.h(331): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusterFindCentroid ^ cluster.h(339): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) PtrajClusteringFree, ^ cluster.h(340): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringMergeClusters, ^ cluster.h(341): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringSplitCluster, ^ cluster.h(342): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringGetNewCluster, ^ cluster.h(343): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringFindKmeansSeeds, ^ cluster.h(344): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringClusterLinkage, ^ cluster.h(345): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringClusterMeans, ^ cluster.h(346): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterCobweb, ^ cluster.h(347): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringNewCobwebCluster, ^ cluster.h(348): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebAddNewFrame, ^ cluster.h(349): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajCobwebClusterComputeMeans, ^ cluster.h(350): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebClusterFree, ^ cluster.h(351): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebCopyMeans, ^ cluster.h(352): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringSOMLearn, ^ cluster.h(353): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringOutputStatus ^ icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o evec.o evec.c clusterLib.h(915): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) BASEClusterFree, ^ clusterLib.h(916): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusterFindCentroid ^ clusterLib.h(920): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) BASEClusteringFree, ^ clusterLib.h(921): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringMergeClusters, ^ clusterLib.h(922): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringSplitCluster, ^ clusterLib.h(923): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringGetNewCluster, ^ clusterLib.h(924): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringFindKmeansSeeds, ^ clusterLib.h(925): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterLinkage, ^ clusterLib.h(926): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterMeans, ^ clusterLib.h(927): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterCobweb, ^ clusterLib.h(928): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringNewCobwebCluster, ^ clusterLib.h(929): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringCobwebAddNewFrame, ^ clusterLib.h(930): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASECobwebClusterComputeMeans, ^ clusterLib.h(931): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringCobwebClusterFree, ^ clusterLib.h(932): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASECobwebClusterCopyMeans, ^ clusterLib.h(933): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringSOMLearn, ^ clusterLib.h(934): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringOutputStatus, ^ cluster.h(330): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) PtrajClusterFree, ^ cluster.h(331): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusterFindCentroid ^ cluster.h(339): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) PtrajClusteringFree, ^ cluster.h(340): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringMergeClusters, ^ cluster.h(341): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringSplitCluster, ^ cluster.h(342): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringGetNewCluster, ^ cluster.h(343): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringFindKmeansSeeds, ^ cluster.h(344): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringClusterLinkage, ^ cluster.h(345): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringClusterMeans, ^ cluster.h(346): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterCobweb, ^ cluster.h(347): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringNewCobwebCluster, ^ cluster.h(348): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebAddNewFrame, ^ cluster.h(349): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajCobwebClusterComputeMeans, ^ cluster.h(350): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebClusterFree, ^ cluster.h(351): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebCopyMeans, ^ cluster.h(352): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringSOMLearn, ^ cluster.h(353): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringOutputStatus ^ icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o torsion.o torsion.c clusterLib.h(915): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) BASEClusterFree, ^ clusterLib.h(916): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusterFindCentroid ^ clusterLib.h(920): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) BASEClusteringFree, ^ clusterLib.h(921): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringMergeClusters, ^ clusterLib.h(922): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringSplitCluster, ^ clusterLib.h(923): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringGetNewCluster, ^ clusterLib.h(924): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringFindKmeansSeeds, ^ clusterLib.h(925): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterLinkage, ^ clusterLib.h(926): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterMeans, ^ clusterLib.h(927): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterCobweb, ^ clusterLib.h(928): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringNewCobwebCluster, ^ clusterLib.h(929): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringCobwebAddNewFrame, ^ clusterLib.h(930): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASECobwebClusterComputeMeans, ^ clusterLib.h(931): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringCobwebClusterFree, ^ clusterLib.h(932): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASECobwebClusterCopyMeans, ^ clusterLib.h(933): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringSOMLearn, ^ clusterLib.h(934): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringOutputStatus, ^ cluster.h(330): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) PtrajClusterFree, ^ cluster.h(331): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusterFindCentroid ^ cluster.h(339): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) PtrajClusteringFree, ^ cluster.h(340): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringMergeClusters, ^ cluster.h(341): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringSplitCluster, ^ cluster.h(342): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringGetNewCluster, ^ cluster.h(343): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringFindKmeansSeeds, ^ cluster.h(344): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringClusterLinkage, ^ cluster.h(345): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringClusterMeans, ^ cluster.h(346): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterCobweb, ^ cluster.h(347): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringNewCobwebCluster, ^ cluster.h(348): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebAddNewFrame, ^ cluster.h(349): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajCobwebClusterComputeMeans, ^ cluster.h(350): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebClusterFree, ^ cluster.h(351): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebCopyMeans, ^ cluster.h(352): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringSOMLearn, ^ cluster.h(353): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringOutputStatus ^ icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o mask.o mask.c clusterLib.h(915): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) BASEClusterFree, ^ clusterLib.h(916): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusterFindCentroid ^ clusterLib.h(920): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) BASEClusteringFree, ^ clusterLib.h(921): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringMergeClusters, ^ clusterLib.h(922): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringSplitCluster, ^ clusterLib.h(923): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringGetNewCluster, ^ clusterLib.h(924): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringFindKmeansSeeds, ^ clusterLib.h(925): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterLinkage, ^ clusterLib.h(926): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterMeans, ^ clusterLib.h(927): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterCobweb, ^ clusterLib.h(928): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringNewCobwebCluster, ^ clusterLib.h(929): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringCobwebAddNewFrame, ^ clusterLib.h(930): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASECobwebClusterComputeMeans, ^ clusterLib.h(931): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringCobwebClusterFree, ^ clusterLib.h(932): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASECobwebClusterCopyMeans, ^ clusterLib.h(933): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringSOMLearn, ^ clusterLib.h(934): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringOutputStatus, ^ cluster.h(330): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) PtrajClusterFree, ^ cluster.h(331): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusterFindCentroid ^ cluster.h(339): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) PtrajClusteringFree, ^ cluster.h(340): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringMergeClusters, ^ cluster.h(341): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringSplitCluster, ^ cluster.h(342): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringGetNewCluster, ^ cluster.h(343): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringFindKmeansSeeds, ^ cluster.h(344): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringClusterLinkage, ^ cluster.h(345): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringClusterMeans, ^ cluster.h(346): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterCobweb, ^ cluster.h(347): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringNewCobwebCluster, ^ cluster.h(348): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebAddNewFrame, ^ cluster.h(349): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajCobwebClusterComputeMeans, ^ cluster.h(350): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebClusterFree, ^ cluster.h(351): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebCopyMeans, ^ cluster.h(352): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringSOMLearn, ^ cluster.h(353): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringOutputStatus ^ mask.c(722): warning #592: variable "pMask" is used before its value is set return (pMask); ^ mask.c(736): warning #1011: missing return statement at end of non-void function "selectDist" } ^ icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o rms.o rms.c icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o display.o display.c clusterLib.h(915): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) BASEClusterFree, ^ clusterLib.h(916): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusterFindCentroid ^ clusterLib.h(920): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) BASEClusteringFree, ^ clusterLib.h(921): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringMergeClusters, ^ clusterLib.h(922): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringSplitCluster, ^ clusterLib.h(923): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringGetNewCluster, ^ clusterLib.h(924): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringFindKmeansSeeds, ^ clusterLib.h(925): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterLinkage, ^ clusterLib.h(926): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterMeans, ^ clusterLib.h(927): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterCobweb, ^ clusterLib.h(928): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringNewCobwebCluster, ^ clusterLib.h(929): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringCobwebAddNewFrame, ^ clusterLib.h(930): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASECobwebClusterComputeMeans, ^ clusterLib.h(931): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringCobwebClusterFree, ^ clusterLib.h(932): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASECobwebClusterCopyMeans, ^ clusterLib.h(933): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringSOMLearn, ^ clusterLib.h(934): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringOutputStatus, ^ cluster.h(330): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) PtrajClusterFree, ^ cluster.h(331): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusterFindCentroid ^ cluster.h(339): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) PtrajClusteringFree, ^ cluster.h(340): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringMergeClusters, ^ cluster.h(341): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringSplitCluster, ^ cluster.h(342): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringGetNewCluster, ^ cluster.h(343): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringFindKmeansSeeds, ^ cluster.h(344): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringClusterLinkage, ^ cluster.h(345): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringClusterMeans, ^ cluster.h(346): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterCobweb, ^ cluster.h(347): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringNewCobwebCluster, ^ cluster.h(348): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebAddNewFrame, ^ cluster.h(349): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajCobwebClusterComputeMeans, ^ cluster.h(350): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebClusterFree, ^ cluster.h(351): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebCopyMeans, ^ cluster.h(352): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringSOMLearn, ^ cluster.h(353): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringOutputStatus ^ icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o interface.o interface.c clusterLib.h(915): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) BASEClusterFree, ^ clusterLib.h(916): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusterFindCentroid ^ clusterLib.h(920): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) BASEClusteringFree, ^ clusterLib.h(921): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringMergeClusters, ^ clusterLib.h(922): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringSplitCluster, ^ clusterLib.h(923): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringGetNewCluster, ^ clusterLib.h(924): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringFindKmeansSeeds, ^ clusterLib.h(925): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterLinkage, ^ clusterLib.h(926): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterMeans, ^ clusterLib.h(927): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterCobweb, ^ clusterLib.h(928): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringNewCobwebCluster, ^ clusterLib.h(929): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringCobwebAddNewFrame, ^ clusterLib.h(930): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASECobwebClusterComputeMeans, ^ clusterLib.h(931): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringCobwebClusterFree, ^ clusterLib.h(932): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASECobwebClusterCopyMeans, ^ clusterLib.h(933): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringSOMLearn, ^ clusterLib.h(934): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringOutputStatus, ^ cluster.h(330): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) PtrajClusterFree, ^ cluster.h(331): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusterFindCentroid ^ cluster.h(339): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) PtrajClusteringFree, ^ cluster.h(340): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringMergeClusters, ^ cluster.h(341): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringSplitCluster, ^ cluster.h(342): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringGetNewCluster, ^ cluster.h(343): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringFindKmeansSeeds, ^ cluster.h(344): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringClusterLinkage, ^ cluster.h(345): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringClusterMeans, ^ cluster.h(346): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterCobweb, ^ cluster.h(347): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringNewCobwebCluster, ^ cluster.h(348): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebAddNewFrame, ^ cluster.h(349): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajCobwebClusterComputeMeans, ^ cluster.h(350): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebClusterFree, ^ cluster.h(351): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebCopyMeans, ^ cluster.h(352): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringSOMLearn, ^ cluster.h(353): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringOutputStatus ^ icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o energy.o energy.c clusterLib.h(915): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) BASEClusterFree, ^ clusterLib.h(916): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusterFindCentroid ^ clusterLib.h(920): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) BASEClusteringFree, ^ clusterLib.h(921): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringMergeClusters, ^ clusterLib.h(922): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringSplitCluster, ^ clusterLib.h(923): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringGetNewCluster, ^ clusterLib.h(924): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringFindKmeansSeeds, ^ clusterLib.h(925): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterLinkage, ^ clusterLib.h(926): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterMeans, ^ clusterLib.h(927): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterCobweb, ^ clusterLib.h(928): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringNewCobwebCluster, ^ clusterLib.h(929): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringCobwebAddNewFrame, ^ clusterLib.h(930): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASECobwebClusterComputeMeans, ^ clusterLib.h(931): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringCobwebClusterFree, ^ clusterLib.h(932): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASECobwebClusterCopyMeans, ^ clusterLib.h(933): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringSOMLearn, ^ clusterLib.h(934): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringOutputStatus, ^ cluster.h(330): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) PtrajClusterFree, ^ cluster.h(331): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusterFindCentroid ^ cluster.h(339): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) PtrajClusteringFree, ^ cluster.h(340): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringMergeClusters, ^ cluster.h(341): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringSplitCluster, ^ cluster.h(342): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringGetNewCluster, ^ cluster.h(343): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringFindKmeansSeeds, ^ cluster.h(344): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringClusterLinkage, ^ cluster.h(345): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringClusterMeans, ^ cluster.h(346): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterCobweb, ^ cluster.h(347): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringNewCobwebCluster, ^ cluster.h(348): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebAddNewFrame, ^ cluster.h(349): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajCobwebClusterComputeMeans, ^ cluster.h(350): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebClusterFree, ^ cluster.h(351): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebCopyMeans, ^ cluster.h(352): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringSOMLearn, ^ cluster.h(353): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringOutputStatus ^ icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o experimental.o experimental.c clusterLib.h(915): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) BASEClusterFree, ^ clusterLib.h(916): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusterFindCentroid ^ clusterLib.h(920): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) BASEClusteringFree, ^ clusterLib.h(921): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringMergeClusters, ^ clusterLib.h(922): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringSplitCluster, ^ clusterLib.h(923): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringGetNewCluster, ^ clusterLib.h(924): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringFindKmeansSeeds, ^ clusterLib.h(925): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterLinkage, ^ clusterLib.h(926): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterMeans, ^ clusterLib.h(927): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterCobweb, ^ clusterLib.h(928): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringNewCobwebCluster, ^ clusterLib.h(929): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringCobwebAddNewFrame, ^ clusterLib.h(930): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASECobwebClusterComputeMeans, ^ clusterLib.h(931): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringCobwebClusterFree, ^ clusterLib.h(932): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASECobwebClusterCopyMeans, ^ clusterLib.h(933): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringSOMLearn, ^ clusterLib.h(934): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringOutputStatus, ^ cluster.h(330): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) PtrajClusterFree, ^ cluster.h(331): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusterFindCentroid ^ cluster.h(339): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) PtrajClusteringFree, ^ cluster.h(340): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringMergeClusters, ^ cluster.h(341): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringSplitCluster, ^ cluster.h(342): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringGetNewCluster, ^ cluster.h(343): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringFindKmeansSeeds, ^ cluster.h(344): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringClusterLinkage, ^ cluster.h(345): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringClusterMeans, ^ cluster.h(346): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterCobweb, ^ cluster.h(347): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringNewCobwebCluster, ^ cluster.h(348): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebAddNewFrame, ^ cluster.h(349): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajCobwebClusterComputeMeans, ^ cluster.h(350): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebClusterFree, ^ cluster.h(351): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebCopyMeans, ^ cluster.h(352): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringSOMLearn, ^ cluster.h(353): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringOutputStatus ^ icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o ptraj.o ptraj.c clusterLib.h(915): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) BASEClusterFree, ^ clusterLib.h(916): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusterFindCentroid ^ clusterLib.h(920): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) BASEClusteringFree, ^ clusterLib.h(921): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringMergeClusters, ^ clusterLib.h(922): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringSplitCluster, ^ clusterLib.h(923): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringGetNewCluster, ^ clusterLib.h(924): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringFindKmeansSeeds, ^ clusterLib.h(925): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterLinkage, ^ clusterLib.h(926): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterMeans, ^ clusterLib.h(927): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterCobweb, ^ clusterLib.h(928): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringNewCobwebCluster, ^ clusterLib.h(929): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringCobwebAddNewFrame, ^ clusterLib.h(930): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASECobwebClusterComputeMeans, ^ clusterLib.h(931): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringCobwebClusterFree, ^ clusterLib.h(932): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASECobwebClusterCopyMeans, ^ clusterLib.h(933): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringSOMLearn, ^ clusterLib.h(934): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringOutputStatus, ^ cluster.h(330): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) PtrajClusterFree, ^ cluster.h(331): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusterFindCentroid ^ cluster.h(339): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) PtrajClusteringFree, ^ cluster.h(340): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringMergeClusters, ^ cluster.h(341): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringSplitCluster, ^ cluster.h(342): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringGetNewCluster, ^ cluster.h(343): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringFindKmeansSeeds, ^ cluster.h(344): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringClusterLinkage, ^ cluster.h(345): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringClusterMeans, ^ cluster.h(346): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterCobweb, ^ cluster.h(347): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringNewCobwebCluster, ^ cluster.h(348): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebAddNewFrame, ^ cluster.h(349): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajCobwebClusterComputeMeans, ^ cluster.h(350): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebClusterFree, ^ cluster.h(351): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebCopyMeans, ^ cluster.h(352): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringSOMLearn, ^ cluster.h(353): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringOutputStatus ^ icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o actions.o actions.c clusterLib.h(915): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) BASEClusterFree, ^ clusterLib.h(916): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusterFindCentroid ^ clusterLib.h(920): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) BASEClusteringFree, ^ clusterLib.h(921): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringMergeClusters, ^ clusterLib.h(922): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringSplitCluster, ^ clusterLib.h(923): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringGetNewCluster, ^ clusterLib.h(924): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringFindKmeansSeeds, ^ clusterLib.h(925): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterLinkage, ^ clusterLib.h(926): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterMeans, ^ clusterLib.h(927): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterCobweb, ^ clusterLib.h(928): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringNewCobwebCluster, ^ clusterLib.h(929): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringCobwebAddNewFrame, ^ clusterLib.h(930): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASECobwebClusterComputeMeans, ^ clusterLib.h(931): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringCobwebClusterFree, ^ clusterLib.h(932): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASECobwebClusterCopyMeans, ^ clusterLib.h(933): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringSOMLearn, ^ clusterLib.h(934): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringOutputStatus, ^ cluster.h(330): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) PtrajClusterFree, ^ cluster.h(331): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusterFindCentroid ^ cluster.h(339): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) PtrajClusteringFree, ^ cluster.h(340): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringMergeClusters, ^ cluster.h(341): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringSplitCluster, ^ cluster.h(342): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringGetNewCluster, ^ cluster.h(343): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringFindKmeansSeeds, ^ cluster.h(344): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringClusterLinkage, ^ cluster.h(345): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringClusterMeans, ^ cluster.h(346): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterCobweb, ^ cluster.h(347): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringNewCobwebCluster, ^ cluster.h(348): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebAddNewFrame, ^ cluster.h(349): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajCobwebClusterComputeMeans, ^ cluster.h(350): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebClusterFree, ^ cluster.h(351): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebCopyMeans, ^ cluster.h(352): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringSOMLearn, ^ cluster.h(353): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringOutputStatus ^ actions.c(487): warning #188: enumerated type mixed with another type INITIALIZE_scalarInfo(info); ^ actions.c(698): warning #188: enumerated type mixed with another type INITIALIZE_scalarInfo(info); ^ actions.c(1864): warning #117: non-void function "transformAverage" should return a value return; ^ actions.c(2353): warning #188: enumerated type mixed with another type INITIALIZE_scalarInfo(scalar); ^ actions.c(3693): warning #117: non-void function "transformCluster" should return a value return; ^ actions.c(3777): warning #117: non-void function "transformCluster" should return a value if (action->iarg1 == CLUSTER_DBI) return; ^ actions.c(3778): warning #117: non-void function "transformCluster" should return a value if (action->iarg1 == CLUSTER_ANOVA) return; ^ actions.c(3779): warning #117: non-void function "transformCluster" should return a value if (action->iarg1 == CLUSTER_COMPARE) return; ^ actions.c(3822): warning #117: non-void function "transformCluster" should return a value return; ^ actions.c(4031): warning #188: enumerated type mixed with another type INITIALIZE_scalarInfo(attributeInfo); ^ actions.c(4074): warning #188: enumerated type mixed with another type INITIALIZE_scalarInfo(attributeInfo); ^ actions.c(4481): warning #1011: missing return statement at end of non-void function "transformClusterAttribute" } ^ actions.c(5783): warning #188: enumerated type mixed with another type INITIALIZE_scalarInfo(info); ^ actions.c(6075): warning #188: enumerated type mixed with another type INITIALIZE_scalarInfo(info); ^ actions.c(7813): warning #188: enumerated type mixed with another type INITIALIZE_scalarInfo(distanceInfo); ^ actions.c(8019): warning #188: enumerated type mixed with another type INITIALIZE_scalarInfo(distanceInfo); ^ actions.c(8135): warning #188: enumerated type mixed with another type INITIALIZE_scalarInfo(distanceInfo); ^ actions.c(8429): warning #188: enumerated type mixed with another type INITIALIZE_scalarInfo(distanceInfo); ^ actions.c(10725): warning #186: pointless comparison of unsigned integer with zero if ( ( kalloc * sizeof(float) ) < 0 ) { ^ actions.c(13953): warning #188: enumerated type mixed with another type INITIALIZE_scalarInfo(info); ^ actions.c(14282): warning #188: enumerated type mixed with another type INITIALIZE_scalarInfo(info); ^ actions.c(15811): warning #188: enumerated type mixed with another type INITIALIZE_scalarInfo(info); ^ icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o analyze.o analyze.c clusterLib.h(915): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) BASEClusterFree, ^ clusterLib.h(916): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusterFindCentroid ^ clusterLib.h(920): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) BASEClusteringFree, ^ clusterLib.h(921): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringMergeClusters, ^ clusterLib.h(922): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringSplitCluster, ^ clusterLib.h(923): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringGetNewCluster, ^ clusterLib.h(924): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringFindKmeansSeeds, ^ clusterLib.h(925): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterLinkage, ^ clusterLib.h(926): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterMeans, ^ clusterLib.h(927): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterCobweb, ^ clusterLib.h(928): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringNewCobwebCluster, ^ clusterLib.h(929): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringCobwebAddNewFrame, ^ clusterLib.h(930): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASECobwebClusterComputeMeans, ^ clusterLib.h(931): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringCobwebClusterFree, ^ clusterLib.h(932): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASECobwebClusterCopyMeans, ^ clusterLib.h(933): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringSOMLearn, ^ clusterLib.h(934): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringOutputStatus, ^ cluster.h(330): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) PtrajClusterFree, ^ cluster.h(331): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusterFindCentroid ^ cluster.h(339): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) PtrajClusteringFree, ^ cluster.h(340): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringMergeClusters, ^ cluster.h(341): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringSplitCluster, ^ cluster.h(342): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringGetNewCluster, ^ cluster.h(343): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringFindKmeansSeeds, ^ cluster.h(344): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringClusterLinkage, ^ cluster.h(345): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringClusterMeans, ^ cluster.h(346): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterCobweb, ^ cluster.h(347): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringNewCobwebCluster, ^ cluster.h(348): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebAddNewFrame, ^ cluster.h(349): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajCobwebClusterComputeMeans, ^ cluster.h(350): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebClusterFree, ^ cluster.h(351): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebCopyMeans, ^ cluster.h(352): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringSOMLearn, ^ cluster.h(353): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringOutputStatus ^ analyze.c(2288): warning #188: enumerated type mixed with another type INITIALIZE_scalarInfo(scalar); ^ ifort -c -FR -ip -O3 -xHost -o thermo.o thermo.f ifort -c -FR -ip -O3 -xHost -o pubfft.o pubfft.f icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o cluster.o cluster.c clusterLib.h(915): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) BASEClusterFree, ^ clusterLib.h(916): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusterFindCentroid ^ clusterLib.h(920): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) BASEClusteringFree, ^ clusterLib.h(921): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringMergeClusters, ^ clusterLib.h(922): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringSplitCluster, ^ clusterLib.h(923): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringGetNewCluster, ^ clusterLib.h(924): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringFindKmeansSeeds, ^ clusterLib.h(925): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterLinkage, ^ clusterLib.h(926): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterMeans, ^ clusterLib.h(927): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterCobweb, ^ clusterLib.h(928): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringNewCobwebCluster, ^ clusterLib.h(929): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringCobwebAddNewFrame, ^ clusterLib.h(930): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASECobwebClusterComputeMeans, ^ clusterLib.h(931): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringCobwebClusterFree, ^ clusterLib.h(932): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASECobwebClusterCopyMeans, ^ clusterLib.h(933): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringSOMLearn, ^ clusterLib.h(934): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringOutputStatus, ^ cluster.h(330): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) PtrajClusterFree, ^ cluster.h(331): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusterFindCentroid ^ cluster.h(339): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) PtrajClusteringFree, ^ cluster.h(340): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringMergeClusters, ^ cluster.h(341): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringSplitCluster, ^ cluster.h(342): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringGetNewCluster, ^ cluster.h(343): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringFindKmeansSeeds, ^ cluster.h(344): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringClusterLinkage, ^ cluster.h(345): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringClusterMeans, ^ cluster.h(346): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterCobweb, ^ cluster.h(347): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringNewCobwebCluster, ^ cluster.h(348): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebAddNewFrame, ^ cluster.h(349): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajCobwebClusterComputeMeans, ^ cluster.h(350): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebClusterFree, ^ cluster.h(351): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebCopyMeans, ^ cluster.h(352): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringSOMLearn, ^ cluster.h(353): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringOutputStatus ^ cluster.c(87): warning #117: non-void function "MDSDistance" should return a value return; ^ cluster.c(181): warning #1011: missing return statement at end of non-void function "PtrajGetDistance" } ^ cluster.c(3267): warning #177: label "cleanup" was declared but never referenced cleanup: ^ cluster.c(4321): warning #181: argument is incompatible with corresponding format string conversion fprintf(File,"#Matrix Calculation Time: %d seconds\n",This->MatrixTime-This->StartTime); ^ cluster.c(4322): warning #181: argument is incompatible with corresponding format string conversion fprintf(stdout," Clustering elapsed time: %d seconds\n",time(NULL) - This->StartTime); ^ cluster.c(4324): warning #181: argument is incompatible with corresponding format string conversion fprintf(File,"#First Pass Time: %d seconds\n",This->FirstPassTime - This->MatrixTime); ^ cluster.c(4326): warning #181: argument is incompatible with corresponding format string conversion fprintf(File,"#Total Calculation Time: %d seconds\n",t - This->StartTime); ^ cluster.c(4805): warning #1011: missing return statement at end of non-void function "PrintCobwebTreeNodeName" } ^ cluster.c(5974): warning #1011: missing return statement at end of non-void function "PtrajClusteringGetAttributeArrayCount" } ^ cluster.c(7318): warning #177: label "cleanup" was declared but never referenced cleanup: ^ cluster.c(7496): warning #177: label "cleanup" was declared but never referenced cleanup: ^ cluster.c(7947): warning #1011: missing return statement at end of non-void function "printClusterNode" } ^ cluster.c(7959): warning #1011: missing return statement at end of non-void function "printCluster" } ^ cluster.c(7971): warning #1011: missing return statement at end of non-void function "printClosestNode" } ^ cluster.c(7981): warning #181: argument is incompatible with corresponding format string conversion printf("cluster%i--%x\n", i, temp); ^ cluster.c(7983): warning #181: argument is incompatible with corresponding format string conversion printf("cluster%i--%x\n", i, (PtrajCluster*)temp->Cluster); ^ cluster.c(7987): warning #181: argument is incompatible with corresponding format string conversion printf("cluster%i--%x\n", i, (ClusterNode*)((ClosestCluster*)((PtrajCluster*)temp->Cluster)->entry)->ClosestNode); ^ cluster.c(8000): warning #181: argument is incompatible with corresponding format string conversion printf("cluster%i--%x\t", i, temp); ^ cluster.c(8001): warning #181: argument is incompatible with corresponding format string conversion printf("%x\t", (PtrajCluster*)temp->Cluster); ^ cluster.c(8004): warning #181: argument is incompatible with corresponding format string conversion printf("%x(%i)\t", (ClusterNode*) ^ icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o clusterLib.o clusterLib.c clusterLib.h(915): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) BASEClusterFree, ^ clusterLib.h(916): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusterFindCentroid ^ clusterLib.h(920): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) BASEClusteringFree, ^ clusterLib.h(921): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringMergeClusters, ^ clusterLib.h(922): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringSplitCluster, ^ clusterLib.h(923): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringGetNewCluster, ^ clusterLib.h(924): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringFindKmeansSeeds, ^ clusterLib.h(925): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterLinkage, ^ clusterLib.h(926): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterMeans, ^ clusterLib.h(927): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterCobweb, ^ clusterLib.h(928): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringNewCobwebCluster, ^ clusterLib.h(929): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringCobwebAddNewFrame, ^ clusterLib.h(930): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASECobwebClusterComputeMeans, ^ clusterLib.h(931): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringCobwebClusterFree, ^ clusterLib.h(932): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASECobwebClusterCopyMeans, ^ clusterLib.h(933): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringSOMLearn, ^ clusterLib.h(934): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringOutputStatus, ^ cluster.h(330): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) PtrajClusterFree, ^ cluster.h(331): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusterFindCentroid ^ cluster.h(339): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" { (void *) PtrajClusteringFree, ^ cluster.h(340): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringMergeClusters, ^ cluster.h(341): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringSplitCluster, ^ cluster.h(342): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringGetNewCluster, ^ cluster.h(343): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringFindKmeansSeeds, ^ cluster.h(344): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringClusterLinkage, ^ cluster.h(345): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringClusterMeans, ^ cluster.h(346): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) BASEClusteringClusterCobweb, ^ cluster.h(347): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringNewCobwebCluster, ^ cluster.h(348): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebAddNewFrame, ^ cluster.h(349): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajCobwebClusterComputeMeans, ^ cluster.h(350): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebClusterFree, ^ cluster.h(351): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringCobwebCopyMeans, ^ cluster.h(352): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringSOMLearn, ^ cluster.h(353): warning #144: a value of type "void *" cannot be used to initialize an entity of type "VirtualFunction" (void *) PtrajClusteringOutputStatus ^ clusterLib.c(914): warning #117: non-void function "ClusteringMeasureTScore" should return a value return; ^ clusterLib.c(919): warning #117: non-void function "ClusteringMeasureTScore" should return a value return; ^ clusterLib.c(940): warning #1011: missing return statement at end of non-void function "ClusteringMeasureTScore" } ^ clusterLib.c(1043): warning #592: variable "PointIndex" is used before its value is set while(PointIndex < PointCount) ^ clusterLib.c(1430): warning #177: label "cleanup" was declared but never referenced cleanup: ^ clusterLib.c(2413): warning #1011: missing return statement at end of non-void function "BASEClusteringPointToPointDistance" } ^ clusterLib.c(4484): warning #1011: missing return statement at end of non-void function "ClusteringComputeANOVA" } ^ icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -shared-intel \ -o rdparm main.o rdparm.o dispatch.o help.o utility.o second.o io.o trajectory.o netcdf_ptraj.o parallel_ptraj.o evec.o torsion.o mask.o rms.o display.o interface.o energy.o experimental.o ptraj.o actions.o analyze.o thermo.o pubfft.o cluster.o clusterLib.o /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/libpdb.a /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/arpack.a -Wl,--start-group /opt/intel/mkl/10.2.2.025/lib/em64t/libmkl_intel_lp64.a /opt/intel/mkl/10.2.2.025/lib/em64t/libmkl_sequential.a /opt/intel/mkl/10.2.2.025/lib/em64t/libmkl_core.a -Wl,--end-group -lpthread -L/opt/intel/Compiler/11.1/059/lib/intel64/ -lifport -lifcore -lsvml /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/libnetcdf.a -lm cd ../lapack && make skip make[2]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/lapack' skipping compilation of LAPACK make[2]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/lapack' cd ../blas && make skip make[2]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/blas' skipping compilation of BLAS make[2]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/blas' icc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -shared-intel \ -o ptraj main.o rdparm.o dispatch.o help.o utility.o second.o io.o trajectory.o netcdf_ptraj.o parallel_ptraj.o evec.o torsion.o mask.o rms.o display.o interface.o energy.o experimental.o ptraj.o actions.o analyze.o thermo.o pubfft.o cluster.o clusterLib.o /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/libpdb.a /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/arpack.a -Wl,--start-group /opt/intel/mkl/10.2.2.025/lib/em64t/libmkl_intel_lp64.a /opt/intel/mkl/10.2.2.025/lib/em64t/libmkl_sequential.a /opt/intel/mkl/10.2.2.025/lib/em64t/libmkl_core.a -Wl,--end-group -lpthread -L/opt/intel/Compiler/11.1/059/lib/intel64/ -lifport -lifcore -lsvml /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/lib/libnetcdf.a -lm /bin/mv rdparm ptraj /usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/bin make[1]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/ptraj' (cd cpptraj && make yes) make[1]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/cpptraj' cd src && make -f Makefile_at install make[2]: Entering directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/cpptraj/src' icpc -c -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/include -ip -O3 -xHost -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o main.o main.cpp icpc -c -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/include -ip -O3 -xHost -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AmberNetcdf.o AmberNetcdf.cpp icpc -c -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/include -ip -O3 -xHost -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AmberParm.o AmberParm.cpp icpc -c -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/include -ip -O3 -xHost -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AmberTraj.o AmberTraj.cpp icpc -c -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/include -ip -O3 -xHost -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o TrajFile.o TrajFile.cpp icpc -c -I/usr/users/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/include -ip -O3 -xHost -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Frame.o Frame.cpp Frame.cpp(101): error: function "Frame::ZeroCoords" has already been defined void Frame::ZeroCoords() { ^ Frame.cpp(111): error: function "Frame::AddCoord" has already been defined void Frame::AddCoord(Frame *FrameIn) { ^ Frame.cpp(125): error: function "Frame::Divide" has already been defined void Frame::Divide(double divisor) { ^ compilation aborted for Frame.cpp (code 2) make[2]: *** [Frame.o] Error 2 make[2]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/cpptraj/src' make[1]: *** [yes] Error 2 make[1]: Leaving directory `/home/mpg02/MMVB/vcojoca/apps/magnycours/amber/11-1.5_openmpi-1.4.2_intel-11.1.059/AmberTools/src/cpptraj' make: *** [serial] Error 2