This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by MTK++ configure 0.2.0, which was generated by GNU Autoconf 2.59. Invocation command line was $ ./configure --prefix=/home/naveenks ## --------- ## ## Platform. ## ## --------- ## hostname = eric2 uname -m = x86_64 uname -r = 2.6.9-78.0.22.EL_lustre.1.6.7.2_loni uname -s = Linux uname -v = #1 SMP Fri Nov 13 18:49:37 CST 2009 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /usr/kerberos/bin PATH: /usr/local/packages/amber/11/intel-11.1-mvapich-1.1/exe PATH: /usr/local/packages/mvapich/1.1/intel-11.1/bin PATH: /usr/local/packages/mvapich/1.1/intel-11.1/sbin PATH: /usr/local/compilers/GNU/gcc-4.3.2/bin PATH: /usr/local/packages/vmd/1.8.6/bin PATH: /usr/local/packages/license/gaussian03/g03/bsd PATH: /usr/local/packages/license/gaussian03/g03/private PATH: /usr/local/packages/license/gaussian03/g03 PATH: /usr/local/packages/gaussian03/gv PATH: /usr/local/packages/boostjam/3.1.17/gcc-4.3.2/bin PATH: /usr/local/compilers/Intel/intel_cc_11.1/bin/intel64 PATH: /usr/local/compilers/Intel/intel_fc_11.1/bin/intel64 PATH: /usr/local/compilers/jdk/bin PATH: /usr/local/packages/globus/globus-4.0.8/bin PATH: /usr/local/packages/git/1.6.1.3/intel-11.1/bin PATH: /bin PATH: /usr/bin PATH: /sbin PATH: /usr/sbin PATH: /usr/local/bin PATH: /usr/local/sbin PATH: /usr/X11R6/bin PATH: /usr/local/packages/softenv/bin PATH: /usr/local/ofed/bin PATH: /usr/local/ofed/sbin PATH: /home/naveenks/mtkpplib/BLAS/bin PATH: /home/naveenks/mtkpplib/qt-everywhere-opensource-src-4.7.2/bin PATH: /home/naveenks/MTKpp_2.0/src/tinyxml PATH: /home/naveenks/mtkpplib/xerces-c-3.1.1-x86_64-linux-gcc-3.4/bin PATH: /home/naveenks/mtkpplib/boost-snapshot-setup.exe PATH: /home/naveenks/lib ## ----------- ## ## Core tests. ## ## ----------- ## configure:1569: checking for a BSD-compatible install configure:1624: result: /usr/local/packages/license/gaussian03/g03/bsd/install -c configure:1635: checking whether build environment is sane configure:1678: result: yes configure:1743: checking for gawk configure:1759: found /bin/gawk configure:1769: result: gawk configure:1779: checking whether make sets $(MAKE) configure:1799: result: yes configure:1977: checking whether to enable maintainer-specific portions of Makefiles configure:1986: result: no configure:2062: checking for g++ configure:2078: found /usr/local/compilers/GNU/gcc-4.3.2/bin/g++ configure:2088: result: g++ configure:2104: checking for C++ compiler version configure:2107: g++ --version &5 g++ (GCC) 4.3.2 Copyright (C) 2008 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:2110: $? = 0 configure:2112: g++ -v &5 Using built-in specs. Target: x86_64-unknown-linux-gnu Configured with: ../../dist/gcc-4.3.2/configure --prefix=/usr/local/compilers/GNU/gcc-4.3.2 --enable-languages=c,c++,fortran,java,objc Thread model: posix gcc version 4.3.2 (GCC) configure:2115: $? = 0 configure:2117: g++ -V &5 g++: '-V' option must have argument configure:2120: $? = 1 configure:2143: checking for C++ compiler default output file name configure:2146: g++ conftest.cc >&5 configure:2149: $? = 0 configure:2195: result: a.out configure:2200: checking whether the C++ compiler works configure:2206: ./a.out configure:2209: $? = 0 configure:2226: result: yes configure:2233: checking whether we are cross compiling configure:2235: result: no configure:2238: checking for suffix of executables configure:2240: g++ -o conftest conftest.cc >&5 configure:2243: $? = 0 configure:2268: result: configure:2274: checking for suffix of object files configure:2295: g++ -c conftest.cc >&5 configure:2298: $? = 0 configure:2320: result: o configure:2324: checking whether we are using the GNU C++ compiler configure:2348: g++ -c conftest.cc >&5 configure:2354: $? = 0 configure:2358: test -z || test ! -s conftest.err configure:2361: $? = 0 configure:2364: test -s conftest.o configure:2367: $? = 0 configure:2380: result: yes configure:2386: checking whether g++ accepts -g configure:2407: g++ -c -g conftest.cc >&5 configure:2413: $? = 0 configure:2417: test -z || test ! -s conftest.err configure:2420: $? = 0 configure:2423: test -s conftest.o configure:2426: $? = 0 configure:2437: result: yes configure:2479: g++ -c -g -O2 conftest.cc >&5 configure:2485: $? = 0 configure:2489: test -z || test ! -s conftest.err configure:2492: $? = 0 configure:2495: test -s conftest.o configure:2498: $? = 0 configure:2524: g++ -c -g -O2 conftest.cc >&5 conftest.cc: In function 'int main()': conftest.cc:15: error: 'exit' was not declared in this scope configure:2530: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "MTK++" | #define PACKAGE_TARNAME "MTKpp" | #define PACKAGE_VERSION "0.2.0" | #define PACKAGE_STRING "MTK++ 0.2.0" | #define PACKAGE_BUGREPORT "martin.b.peters@gmail.com" | #define PACKAGE "MTKpp" | #define VERSION "0.2.0" | /* end confdefs.h. */ | | int | main () | { | exit (42); | ; | return 0; | } configure:2479: g++ -c -g -O2 conftest.cc >&5 conftest.cc:11: error: 'void std::exit(int)' should have been declared inside 'std' configure:2485: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "MTK++" | #define PACKAGE_TARNAME "MTKpp" | #define PACKAGE_VERSION "0.2.0" | #define PACKAGE_STRING "MTK++ 0.2.0" | #define PACKAGE_BUGREPORT "martin.b.peters@gmail.com" | #define PACKAGE "MTKpp" | #define VERSION "0.2.0" | /* end confdefs.h. */ | extern "C" void std::exit (int) throw (); using std::exit; | #include | int | main () | { | exit (42); | ; | return 0; | } configure:2479: g++ -c -g -O2 conftest.cc >&5 conftest.cc:11: error: 'void std::exit(int)' should have been declared inside 'std' In file included from conftest.cc:12: /usr/include/stdlib.h:640: error: declaration of 'void std::exit(int) throw ()' throws different exceptions conftest.cc:11: error: from previous declaration 'void std::exit(int)' configure:2485: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "MTK++" | #define PACKAGE_TARNAME "MTKpp" | #define PACKAGE_VERSION "0.2.0" | #define PACKAGE_STRING "MTK++ 0.2.0" | #define PACKAGE_BUGREPORT "martin.b.peters@gmail.com" | #define PACKAGE "MTKpp" | #define VERSION "0.2.0" | /* end confdefs.h. */ | extern "C" void std::exit (int); using std::exit; | #include | int | main () | { | exit (42); | ; | return 0; | } configure:2479: g++ -c -g -O2 conftest.cc >&5 configure:2485: $? = 0 configure:2489: test -z || test ! -s conftest.err configure:2492: $? = 0 configure:2495: test -s conftest.o configure:2498: $? = 0 configure:2524: g++ -c -g -O2 conftest.cc >&5 configure:2530: $? = 0 configure:2534: test -z || test ! -s conftest.err configure:2537: $? = 0 configure:2540: test -s conftest.o configure:2543: $? = 0 configure:2577: checking for style of include used by make configure:2605: result: GNU configure:2633: checking dependency style of g++ configure:2723: result: gcc3 configure:2786: checking for gcc configure:2802: found /usr/local/compilers/GNU/gcc-4.3.2/bin/gcc configure:2812: result: gcc configure:3056: checking for C compiler version configure:3059: gcc --version &5 gcc (GCC) 4.3.2 Copyright (C) 2008 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:3062: $? = 0 configure:3064: gcc -v &5 Using built-in specs. Target: x86_64-unknown-linux-gnu Configured with: ../../dist/gcc-4.3.2/configure --prefix=/usr/local/compilers/GNU/gcc-4.3.2 --enable-languages=c,c++,fortran,java,objc Thread model: posix gcc version 4.3.2 (GCC) configure:3067: $? = 0 configure:3069: gcc -V &5 gcc: '-V' option must have argument configure:3072: $? = 1 configure:3075: checking whether we are using the GNU C compiler configure:3099: gcc -c conftest.c >&5 configure:3105: $? = 0 configure:3109: test -z || test ! -s conftest.err configure:3112: $? = 0 configure:3115: test -s conftest.o configure:3118: $? = 0 configure:3131: result: yes configure:3137: checking whether gcc accepts -g configure:3158: gcc -c -g conftest.c >&5 configure:3164: $? = 0 configure:3168: test -z || test ! -s conftest.err configure:3171: $? = 0 configure:3174: test -s conftest.o configure:3177: $? = 0 configure:3188: result: yes configure:3205: checking for gcc option to accept ANSI C configure:3275: gcc -c -g -O2 conftest.c >&5 configure:3281: $? = 0 configure:3285: test -z || test ! -s conftest.err configure:3288: $? = 0 configure:3291: test -s conftest.o configure:3294: $? = 0 configure:3312: result: none needed configure:3330: gcc -c -g -O2 conftest.c >&5 conftest.c:2: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'me' configure:3336: $? = 1 configure: failed program was: | #ifndef __cplusplus | choke me | #endif configure:3471: checking dependency style of gcc configure:3561: result: gcc3 configure:3580: checking for swig configure:3598: found /usr/bin/swig configure:3610: result: /usr/bin/swig configure:3619: checking for python configure:3637: found /usr/bin/python configure:3649: result: /usr/bin/python configure:3735: checking build system type configure:3753: result: x86_64-redhat-linux-gnu configure:3761: checking host system type configure:3775: result: x86_64-redhat-linux-gnu configure:3783: checking for a sed that does not truncate output configure:3837: result: /bin/sed configure:3840: checking for egrep configure:3850: result: grep -E configure:3866: checking for ld used by gcc configure:3933: result: /usr/bin/ld configure:3942: checking if the linker (/usr/bin/ld) is GNU ld configure:3957: result: yes configure:3962: checking for /usr/bin/ld option to reload object files configure:3969: result: -r configure:3978: checking for BSD-compatible nm configure:4020: result: /usr/bin/nm -B configure:4024: checking whether ln -s works configure:4028: result: yes configure:4035: checking how to recognise dependent libraries configure:4218: result: pass_all configure:4303: g++ -c -g -O2 conftest.cc >&5 configure:4306: $? = 0 configure:4432: checking how to run the C preprocessor configure:4467: gcc -E conftest.c configure:4473: $? = 0 configure:4505: gcc -E conftest.c conftest.c:14:28: error: ac_nonexistent.h: No such file or directory configure:4511: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "MTK++" | #define PACKAGE_TARNAME "MTKpp" | #define PACKAGE_VERSION "0.2.0" | #define PACKAGE_STRING "MTK++ 0.2.0" | #define PACKAGE_BUGREPORT "martin.b.peters@gmail.com" | #define PACKAGE "MTKpp" | #define VERSION "0.2.0" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | /* end confdefs.h. */ | #include configure:4550: result: gcc -E configure:4574: gcc -E conftest.c configure:4580: $? = 0 configure:4612: gcc -E conftest.c conftest.c:14:28: error: ac_nonexistent.h: No such file or directory configure:4618: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "MTK++" | #define PACKAGE_TARNAME "MTKpp" | #define PACKAGE_VERSION "0.2.0" | #define PACKAGE_STRING "MTK++ 0.2.0" | #define PACKAGE_BUGREPORT "martin.b.peters@gmail.com" | #define PACKAGE "MTKpp" | #define VERSION "0.2.0" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | /* end confdefs.h. */ | #include configure:4662: checking for ANSI C header files configure:4687: gcc -c -g -O2 conftest.c >&5 configure:4693: $? = 0 configure:4697: test -z || test ! -s conftest.err configure:4700: $? = 0 configure:4703: test -s conftest.o configure:4706: $? = 0 configure:4795: gcc -o conftest -g -O2 conftest.c >&5 conftest.c: In function 'main': conftest.c:31: warning: incompatible implicit declaration of built-in function 'exit' configure:4798: $? = 0 configure:4800: ./conftest configure:4803: $? = 0 configure:4818: result: yes configure:4842: checking for sys/types.h configure:4858: gcc -c -g -O2 conftest.c >&5 configure:4864: $? = 0 configure:4868: test -z || test ! -s conftest.err configure:4871: $? = 0 configure:4874: test -s conftest.o configure:4877: $? = 0 configure:4888: result: yes configure:4842: checking for sys/stat.h configure:4858: gcc -c -g -O2 conftest.c >&5 configure:4864: $? = 0 configure:4868: test -z || test ! -s conftest.err configure:4871: $? = 0 configure:4874: test -s conftest.o configure:4877: $? = 0 configure:4888: result: yes configure:4842: checking for stdlib.h configure:4858: gcc -c -g -O2 conftest.c >&5 configure:4864: $? = 0 configure:4868: test -z || test ! -s conftest.err configure:4871: $? = 0 configure:4874: test -s conftest.o configure:4877: $? = 0 configure:4888: result: yes configure:4842: checking for string.h configure:4858: gcc -c -g -O2 conftest.c >&5 configure:4864: $? = 0 configure:4868: test -z || test ! -s conftest.err configure:4871: $? = 0 configure:4874: test -s conftest.o configure:4877: $? = 0 configure:4888: result: yes configure:4842: checking for memory.h configure:4858: gcc -c -g -O2 conftest.c >&5 configure:4864: $? = 0 configure:4868: test -z || test ! -s conftest.err configure:4871: $? = 0 configure:4874: test -s conftest.o configure:4877: $? = 0 configure:4888: result: yes configure:4842: checking for strings.h configure:4858: gcc -c -g -O2 conftest.c >&5 configure:4864: $? = 0 configure:4868: test -z || test ! -s conftest.err configure:4871: $? = 0 configure:4874: test -s conftest.o configure:4877: $? = 0 configure:4888: result: yes configure:4842: checking for inttypes.h configure:4858: gcc -c -g -O2 conftest.c >&5 configure:4864: $? = 0 configure:4868: test -z || test ! -s conftest.err configure:4871: $? = 0 configure:4874: test -s conftest.o configure:4877: $? = 0 configure:4888: result: yes configure:4842: checking for stdint.h configure:4858: gcc -c -g -O2 conftest.c >&5 configure:4864: $? = 0 configure:4868: test -z || test ! -s conftest.err configure:4871: $? = 0 configure:4874: test -s conftest.o configure:4877: $? = 0 configure:4888: result: yes configure:4842: checking for unistd.h configure:4858: gcc -c -g -O2 conftest.c >&5 configure:4864: $? = 0 configure:4868: test -z || test ! -s conftest.err configure:4871: $? = 0 configure:4874: test -s conftest.o configure:4877: $? = 0 configure:4888: result: yes configure:4914: checking dlfcn.h usability configure:4926: gcc -c -g -O2 conftest.c >&5 configure:4932: $? = 0 configure:4936: test -z || test ! -s conftest.err configure:4939: $? = 0 configure:4942: test -s conftest.o configure:4945: $? = 0 configure:4955: result: yes configure:4959: checking dlfcn.h presence configure:4969: gcc -E conftest.c configure:4975: $? = 0 configure:4995: result: yes configure:5030: checking for dlfcn.h configure:5037: result: yes configure:5055: checking how to run the C++ preprocessor configure:5086: g++ -E conftest.cc configure:5092: $? = 0 configure:5124: g++ -E conftest.cc conftest.cc:25:28: error: ac_nonexistent.h: No such file or directory configure:5130: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "MTK++" | #define PACKAGE_TARNAME "MTKpp" | #define PACKAGE_VERSION "0.2.0" | #define PACKAGE_STRING "MTK++ 0.2.0" | #define PACKAGE_BUGREPORT "martin.b.peters@gmail.com" | #define PACKAGE "MTKpp" | #define VERSION "0.2.0" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | /* end confdefs.h. */ | #include configure:5169: result: g++ -E configure:5193: g++ -E conftest.cc configure:5199: $? = 0 configure:5231: g++ -E conftest.cc conftest.cc:25:28: error: ac_nonexistent.h: No such file or directory configure:5237: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "MTK++" | #define PACKAGE_TARNAME "MTKpp" | #define PACKAGE_VERSION "0.2.0" | #define PACKAGE_STRING "MTK++ 0.2.0" | #define PACKAGE_BUGREPORT "martin.b.peters@gmail.com" | #define PACKAGE "MTKpp" | #define VERSION "0.2.0" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | /* end confdefs.h. */ | #include configure:5332: checking for g77 configure:5348: found /usr/bin/g77 configure:5358: result: g77 configure:5373: checking for Fortran 77 compiler version configure:5376: g77 --version &5 GNU Fortran (GCC) 3.4.6 20060404 (Red Hat 3.4.6-8) Copyright (C) 2006 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING or type the command `info -f g77 Copying'. configure:5379: $? = 0 configure:5381: g77 -v &5 Reading specs from /usr/lib/gcc/x86_64-redhat-linux/3.4.6/specs Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared --enable-threads=posix --disable-checking --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-java-awt=gtk --host=x86_64-redhat-linux Thread model: posix gcc version 3.4.6 20060404 (Red Hat 3.4.6-8) configure:5384: $? = 0 configure:5386: g77 -V &5 g77: `-V' option must have argument configure:5389: $? = 1 configure:5397: checking whether we are using the GNU Fortran 77 compiler configure:5411: g77 -c conftest.F >&5 configure:5417: $? = 0 configure:5421: test -z || test ! -s conftest.err configure:5424: $? = 0 configure:5427: test -s conftest.o configure:5430: $? = 0 configure:5443: result: yes configure:5449: checking whether g77 accepts -g configure:5461: g77 -c -g conftest.f >&5 configure:5467: $? = 0 configure:5471: test -z || test ! -s conftest.err configure:5474: $? = 0 configure:5477: test -s conftest.o configure:5480: $? = 0 configure:5492: result: yes configure:5522: checking the maximum length of command line arguments configure:5587: result: 32768 configure:5598: checking command to parse /usr/bin/nm -B output from gcc object configure:5687: g++ -c -g -O2 conftest.cc >&5 configure:5690: $? = 0 configure:5694: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\(\)\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2\3 \3/p' \> conftest.nm configure:5697: $? = 0 configure:5749: g++ -o conftest -g -O2 conftest.cc conftstm.o >&5 configure:5752: $? = 0 configure:5790: result: ok configure:5794: checking for objdir configure:5809: result: .libs configure:5899: checking for ar configure:5915: found /usr/bin/ar configure:5926: result: ar configure:5979: checking for ranlib configure:5995: found /usr/bin/ranlib configure:6006: result: ranlib configure:6059: checking for strip configure:6075: found /usr/bin/strip configure:6086: result: strip configure:6348: checking if gcc static flag works configure:6371: result: yes configure:6389: checking if gcc supports -fno-rtti -fno-exceptions configure:6407: gcc -c -g -O2 -fno-rtti -fno-exceptions conftest.c >&5 cc1: warning: command line option "-fno-rtti" is valid for C++/ObjC++ but not for C configure:6411: $? = 0 configure:6422: result: no configure:6437: checking for gcc option to produce PIC configure:6614: result: -fPIC configure:6622: checking if gcc PIC flag -fPIC works configure:6640: gcc -c -g -O2 -fPIC -DPIC conftest.c >&5 configure:6644: $? = 0 configure:6655: result: yes configure:6679: checking if gcc supports -c -o file.o configure:6700: gcc -c -g -O2 -o out/conftest2.o conftest.c >&5 configure:6704: $? = 0 configure:6724: result: yes configure:6750: checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:7598: result: yes configure:7624: checking whether -lc should be explicitly linked in configure:7629: gcc -c -g -O2 conftest.c >&5 configure:7632: $? = 0 configure:7646: gcc -shared conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| grep -lc \>/dev/null 2\>\&1 configure:7649: $? = 0 configure:7661: result: no configure:7669: checking dynamic linker characteristics configure:8035: gcc -c -g -O2 conftest.c >&5 configure:8038: $? = 0 configure:8230: result: GNU/Linux ld.so configure:8234: checking how to hardcode library paths into programs configure:8259: result: immediate configure:8273: checking whether stripping libraries is possible configure:8278: result: yes configure:9108: checking if libtool supports shared libraries configure:9110: result: yes configure:9113: checking whether to build shared libraries configure:9171: result: yes configure:9174: checking whether to build static libraries configure:9178: result: yes configure:9270: creating libtool configure:9817: checking for ld used by g++ configure:9884: result: /usr/bin/ld -m elf_x86_64 configure:9893: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld configure:9908: result: yes configure:9959: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:10787: result: yes configure:10805: g++ -c -g -O2 conftest.cc >&5 configure:10808: $? = 0 configure:10904: checking for g++ option to produce PIC configure:11156: result: -fPIC configure:11164: checking if g++ PIC flag -fPIC works configure:11182: g++ -c -g -O2 -fPIC -DPIC conftest.cc >&5 configure:11186: $? = 0 configure:11197: result: yes configure:11221: checking if g++ supports -c -o file.o configure:11242: g++ -c -g -O2 -o out/conftest2.o conftest.cc >&5 configure:11246: $? = 0 configure:11266: result: yes configure:11292: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:11317: result: yes configure:11388: checking dynamic linker characteristics configure:11754: g++ -c -g -O2 conftest.cc >&5 configure:11757: $? = 0 configure:11949: result: GNU/Linux ld.so configure:11953: checking how to hardcode library paths into programs configure:11978: result: immediate configure:11992: checking whether stripping libraries is possible configure:11997: result: yes configure:13304: checking if libtool supports shared libraries configure:13306: result: yes configure:13309: checking whether to build shared libraries configure:13327: result: yes configure:13330: checking whether to build static libraries configure:13334: result: yes configure:13346: checking for g77 option to produce PIC configure:13523: result: -fPIC configure:13531: checking if g77 PIC flag -fPIC works configure:13549: g77 -c -g -O2 -fPIC conftest.f >&5 configure:13553: $? = 0 configure:13564: result: yes configure:13588: checking if g77 supports -c -o file.o configure:13609: g77 -c -g -O2 -o out/conftest2.o conftest.f >&5 configure:13613: $? = 0 configure:13633: result: yes configure:13659: checking whether the g77 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:14487: result: yes configure:14558: checking dynamic linker characteristics configure:14924: g77 -c -g -O2 conftest.f >&5 configure:14927: $? = 0 configure:15119: result: GNU/Linux ld.so configure:15123: checking how to hardcode library paths into programs configure:15148: result: immediate configure:15162: checking whether stripping libraries is possible configure:15167: result: yes configure:19358: result: configure:19360: result: Using Boost (v1_38_0) provided with MTK++ configure:19362: result: configure:19405: result: configure:19407: result: Cannot find log4cxx configure:19409: result: configure:19449: checking for X configure:19679: result: libraries /usr/X11R6/lib64, headers /usr/X11R6/include configure:19687: checking QTDIR configure:19706: WARNING: QTDIR is not defined configure:19995: result: configure:19997: result: Using TinyXML provided with MTK++ configure:19999: result: configure:20013: checking for doxygen configure:20029: found /usr/bin/doxygen configure:20040: result: yes configure:20049: checking for latex configure:20065: found /usr/bin/latex configure:20076: result: yes configure:20085: checking for dvips configure:20101: found /usr/bin/dvips configure:20112: result: yes configure:20121: checking for gs configure:20137: found /usr/bin/gs configure:20148: result: yes configure:20157: checking for dot configure:20184: result: no configure:20273: checking for diff configure:20289: found /usr/bin/diff configure:20300: result: yes configure:20491: checking for C++ compiler version configure:20494: g++ --version &5 g++ (GCC) 4.3.2 Copyright (C) 2008 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:20497: $? = 0 configure:20499: g++ -v &5 Using built-in specs. Target: x86_64-unknown-linux-gnu Configured with: ../../dist/gcc-4.3.2/configure --prefix=/usr/local/compilers/GNU/gcc-4.3.2 --enable-languages=c,c++,fortran,java,objc Thread model: posix gcc version 4.3.2 (GCC) configure:20502: $? = 0 configure:20504: g++ -V &5 g++: '-V' option must have argument configure:20507: $? = 1 configure:20510: checking whether we are using the GNU C++ compiler configure:20566: result: yes configure:20572: checking whether g++ accepts -g configure:20623: result: yes configure:20665: g++ -c -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK conftest.cc >&5 configure:20671: $? = 0 configure:20675: test -z || test ! -s conftest.err configure:20678: $? = 0 configure:20681: test -s conftest.o configure:20684: $? = 0 configure:20710: g++ -c -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK conftest.cc >&5 configure:20716: $? = 0 configure:20720: test -z || test ! -s conftest.err configure:20723: $? = 0 configure:20726: test -s conftest.o configure:20729: $? = 0 configure:20754: checking dependency style of g++ configure:20844: result: gcc3 configure:20960: checking for C compiler version configure:20963: gcc --version &5 gcc (GCC) 4.3.2 Copyright (C) 2008 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:20966: $? = 0 configure:20968: gcc -v &5 Using built-in specs. Target: x86_64-unknown-linux-gnu Configured with: ../../dist/gcc-4.3.2/configure --prefix=/usr/local/compilers/GNU/gcc-4.3.2 --enable-languages=c,c++,fortran,java,objc Thread model: posix gcc version 4.3.2 (GCC) configure:20971: $? = 0 configure:20973: gcc -V &5 gcc: '-V' option must have argument configure:20976: $? = 1 configure:20979: checking whether we are using the GNU C compiler configure:21035: result: yes configure:21041: checking whether gcc accepts -g configure:21092: result: yes configure:21109: checking for gcc option to accept ANSI C configure:21216: result: none needed configure:21234: gcc -c -g -O2 -DUSE_TINYXML conftest.c >&5 conftest.c:2: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'me' configure:21240: $? = 1 configure: failed program was: | #ifndef __cplusplus | choke me | #endif configure:21375: checking dependency style of gcc configure:21465: result: gcc3 configure:21504: checking for ANSI C header files configure:21660: result: yes configure:21670: checking whether stat file-mode macros are broken configure:21718: result: no configure:21728: checking whether time.h and sys/time.h may both be included configure:21753: g++ -c -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -Wall -O2 -fPIC conftest.cc >&5 configure:21759: $? = 0 configure:21763: test -z || test ! -s conftest.err configure:21766: $? = 0 configure:21769: test -s conftest.o configure:21772: $? = 0 configure:21783: result: yes configure:21833: checking sys/time.h usability configure:21845: g++ -c -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -Wall -O2 -fPIC conftest.cc >&5 configure:21851: $? = 0 configure:21855: test -z || test ! -s conftest.err configure:21858: $? = 0 configure:21861: test -s conftest.o configure:21864: $? = 0 configure:21874: result: yes configure:21878: checking sys/time.h presence configure:21888: g++ -E conftest.cc configure:21894: $? = 0 configure:21914: result: yes configure:21949: checking for sys/time.h configure:21956: result: yes configure:21824: checking for stdlib.h configure:21829: result: yes configure:21833: checking algorithm usability configure:21845: g++ -c -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -Wall -O2 -fPIC conftest.cc >&5 configure:21851: $? = 0 configure:21855: test -z || test ! -s conftest.err configure:21858: $? = 0 configure:21861: test -s conftest.o configure:21864: $? = 0 configure:21874: result: yes configure:21878: checking algorithm presence configure:21888: g++ -E conftest.cc configure:21894: $? = 0 configure:21914: result: yes configure:21949: checking for algorithm configure:21956: result: yes configure:21833: checking cassert usability configure:21845: g++ -c -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -Wall -O2 -fPIC conftest.cc >&5 configure:21851: $? = 0 configure:21855: test -z || test ! -s conftest.err configure:21858: $? = 0 configure:21861: test -s conftest.o configure:21864: $? = 0 configure:21874: result: yes configure:21878: checking cassert presence configure:21888: g++ -E conftest.cc configure:21894: $? = 0 configure:21914: result: yes configure:21949: checking for cassert configure:21956: result: yes configure:21833: checking cmath usability configure:21845: g++ -c -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -Wall -O2 -fPIC conftest.cc >&5 configure:21851: $? = 0 configure:21855: test -z || test ! -s conftest.err configure:21858: $? = 0 configure:21861: test -s conftest.o configure:21864: $? = 0 configure:21874: result: yes configure:21878: checking cmath presence configure:21888: g++ -E conftest.cc configure:21894: $? = 0 configure:21914: result: yes configure:21949: checking for cmath configure:21956: result: yes configure:21833: checking complex usability configure:21845: g++ -c -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -Wall -O2 -fPIC conftest.cc >&5 configure:21851: $? = 0 configure:21855: test -z || test ! -s conftest.err configure:21858: $? = 0 configure:21861: test -s conftest.o configure:21864: $? = 0 configure:21874: result: yes configure:21878: checking complex presence configure:21888: g++ -E conftest.cc configure:21894: $? = 0 configure:21914: result: yes configure:21949: checking for complex configure:21956: result: yes configure:21833: checking cstring usability configure:21845: g++ -c -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -Wall -O2 -fPIC conftest.cc >&5 configure:21851: $? = 0 configure:21855: test -z || test ! -s conftest.err configure:21858: $? = 0 configure:21861: test -s conftest.o configure:21864: $? = 0 configure:21874: result: yes configure:21878: checking cstring presence configure:21888: g++ -E conftest.cc configure:21894: $? = 0 configure:21914: result: yes configure:21949: checking for cstring configure:21956: result: yes configure:21833: checking deque usability configure:21845: g++ -c -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -Wall -O2 -fPIC conftest.cc >&5 configure:21851: $? = 0 configure:21855: test -z || test ! -s conftest.err configure:21858: $? = 0 configure:21861: test -s conftest.o configure:21864: $? = 0 configure:21874: result: yes configure:21878: checking deque presence configure:21888: g++ -E conftest.cc configure:21894: $? = 0 configure:21914: result: yes configure:21949: checking for deque configure:21956: result: yes configure:21833: checking fstream usability configure:21845: g++ -c -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -Wall -O2 -fPIC conftest.cc >&5 configure:21851: $? = 0 configure:21855: test -z || test ! -s conftest.err configure:21858: $? = 0 configure:21861: test -s conftest.o configure:21864: $? = 0 configure:21874: result: yes configure:21878: checking fstream presence configure:21888: g++ -E conftest.cc configure:21894: $? = 0 configure:21914: result: yes configure:21949: checking for fstream configure:21956: result: yes configure:21833: checking limits usability configure:21845: g++ -c -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -Wall -O2 -fPIC conftest.cc >&5 configure:21851: $? = 0 configure:21855: test -z || test ! -s conftest.err configure:21858: $? = 0 configure:21861: test -s conftest.o configure:21864: $? = 0 configure:21874: result: yes configure:21878: checking limits presence configure:21888: g++ -E conftest.cc configure:21894: $? = 0 configure:21914: result: yes configure:21949: checking for limits configure:21956: result: yes configure:21833: checking list usability configure:21845: g++ -c -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -Wall -O2 -fPIC conftest.cc >&5 configure:21851: $? = 0 configure:21855: test -z || test ! -s conftest.err configure:21858: $? = 0 configure:21861: test -s conftest.o configure:21864: $? = 0 configure:21874: result: yes configure:21878: checking list presence configure:21888: g++ -E conftest.cc configure:21894: $? = 0 configure:21914: result: yes configure:21949: checking for list configure:21956: result: yes configure:21833: checking queue usability configure:21845: g++ -c -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -Wall -O2 -fPIC conftest.cc >&5 configure:21851: $? = 0 configure:21855: test -z || test ! -s conftest.err configure:21858: $? = 0 configure:21861: test -s conftest.o configure:21864: $? = 0 configure:21874: result: yes configure:21878: checking queue presence configure:21888: g++ -E conftest.cc configure:21894: $? = 0 configure:21914: result: yes configure:21949: checking for queue configure:21956: result: yes configure:21833: checking zlib.h usability configure:21845: g++ -c -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -Wall -O2 -fPIC conftest.cc >&5 configure:21851: $? = 0 configure:21855: test -z || test ! -s conftest.err configure:21858: $? = 0 configure:21861: test -s conftest.o configure:21864: $? = 0 configure:21874: result: yes configure:21878: checking zlib.h presence configure:21888: g++ -E conftest.cc configure:21894: $? = 0 configure:21914: result: yes configure:21949: checking for zlib.h configure:21956: result: yes configure:21833: checking string usability configure:21845: g++ -c -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -Wall -O2 -fPIC conftest.cc >&5 configure:21851: $? = 0 configure:21855: test -z || test ! -s conftest.err configure:21858: $? = 0 configure:21861: test -s conftest.o configure:21864: $? = 0 configure:21874: result: yes configure:21878: checking string presence configure:21888: g++ -E conftest.cc configure:21894: $? = 0 configure:21914: result: yes configure:21949: checking for string configure:21956: result: yes configure:21971: checking for stdbool.h that conforms to C99 configure:22024: g++ -c -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -Wall -O2 -fPIC conftest.cc >&5 conftest.cc:72: warning: the address of 's' will always evaluate as 'true' conftest.cc: In function 'int main()': conftest.cc:81: warning: the address of 'a' will always evaluate as 'true' conftest.cc:81: warning: the address of 'b' will always evaluate as 'true' conftest.cc:81: warning: the address of 'c' will always evaluate as 'true' conftest.cc:81: warning: the address of 'd' will always evaluate as 'true' conftest.cc:81: warning: the address of 'f' will always evaluate as 'true' conftest.cc:81: warning: the address of 'g' will always evaluate as 'true' conftest.cc:81: warning: the address of 'h' will always evaluate as 'true' conftest.cc:81: warning: the address of 'i' will always evaluate as 'true' configure:22030: $? = 0 configure:22034: test -z || test ! -s conftest.err configure:22037: $? = 0 configure:22040: test -s conftest.o configure:22043: $? = 0 configure:22054: result: yes configure:22056: checking for _Bool configure:22080: g++ -c -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -Wall -O2 -fPIC conftest.cc >&5 conftest.cc: In function 'int main()': conftest.cc:82: error: '_Bool' was not declared in this scope conftest.cc:82: error: expected primary-expression before ')' token conftest.cc:82: error: expected `)' before numeric constant conftest.cc:84: error: '_Bool' was not declared in this scope configure:22086: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "MTK++" | #define PACKAGE_TARNAME "MTKpp" | #define PACKAGE_VERSION "0.2.0" | #define PACKAGE_STRING "MTK++ 0.2.0" | #define PACKAGE_BUGREPORT "martin.b.peters@gmail.com" | #define PACKAGE "MTKpp" | #define VERSION "0.2.0" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define USE_LOG4CXX 0 | #define USE_TINYXML 1 | #define C99_OK 1 | #define HOST_LINUX 1 | #define STDC_HEADERS 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_ALGORITHM 1 | #define HAVE_CASSERT 1 | #define HAVE_CMATH 1 | #define HAVE_COMPLEX 1 | #define HAVE_CSTRING 1 | #define HAVE_DEQUE 1 | #define HAVE_FSTREAM 1 | #define HAVE_LIMITS 1 | #define HAVE_LIST 1 | #define HAVE_QUEUE 1 | #define HAVE_ZLIB_H 1 | #define HAVE_STRING 1 | /* end confdefs.h. */ | #include | #if HAVE_SYS_TYPES_H | # include | #endif | #if HAVE_SYS_STAT_H | # include | #endif | #if STDC_HEADERS | # include | # include | #else | # if HAVE_STDLIB_H | # include | # endif | #endif | #if HAVE_STRING_H | # if !STDC_HEADERS && HAVE_MEMORY_H | # include | # endif | # include | #endif | #if HAVE_STRINGS_H | # include | #endif | #if HAVE_INTTYPES_H | # include | #else | # if HAVE_STDINT_H | # include | # endif | #endif | #if HAVE_UNISTD_H | # include | #endif | int | main () | { | if ((_Bool *) 0) | return 0; | if (sizeof (_Bool)) | return 0; | ; | return 0; | } configure:22110: result: no configure:22129: checking for an ANSI C-conforming const configure:22196: g++ -c -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -Wall -O2 -fPIC conftest.cc >&5 configure:22202: $? = 0 configure:22206: test -z || test ! -s conftest.err configure:22209: $? = 0 configure:22212: test -s conftest.o configure:22215: $? = 0 configure:22226: result: yes configure:22236: checking for inline configure:22257: g++ -c -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -Wall -O2 -fPIC conftest.cc >&5 configure:22263: $? = 0 configure:22267: test -z || test ! -s conftest.err configure:22270: $? = 0 configure:22273: test -s conftest.o configure:22276: $? = 0 configure:22288: result: inline configure:22310: checking for working strtod configure:22353: g++ -o conftest -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -Wall -O2 -fPIC conftest.cc >&5 conftest.cc: In function 'int main()': conftest.cc:53: warning: deprecated conversion from string constant to 'char*' conftest.cc:47: error: too many arguments to function 'double strtod()' conftest.cc:56: error: at this point in file conftest.cc:64: warning: deprecated conversion from string constant to 'char*' conftest.cc:47: error: too many arguments to function 'double strtod()' conftest.cc:66: error: at this point in file configure:22356: $? = 1 configure: program exited with status 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "MTK++" | #define PACKAGE_TARNAME "MTKpp" | #define PACKAGE_VERSION "0.2.0" | #define PACKAGE_STRING "MTK++ 0.2.0" | #define PACKAGE_BUGREPORT "martin.b.peters@gmail.com" | #define PACKAGE "MTKpp" | #define VERSION "0.2.0" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define USE_LOG4CXX 0 | #define USE_TINYXML 1 | #define C99_OK 1 | #define HOST_LINUX 1 | #define STDC_HEADERS 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_ALGORITHM 1 | #define HAVE_CASSERT 1 | #define HAVE_CMATH 1 | #define HAVE_COMPLEX 1 | #define HAVE_CSTRING 1 | #define HAVE_DEQUE 1 | #define HAVE_FSTREAM 1 | #define HAVE_LIMITS 1 | #define HAVE_LIST 1 | #define HAVE_QUEUE 1 | #define HAVE_ZLIB_H 1 | #define HAVE_STRING 1 | #define HAVE_STDBOOL_H 1 | /* end confdefs.h. */ | | double strtod (); | int | main() | { | { | /* Some versions of Linux strtod mis-parse strings with leading '+'. */ | char *string = " +69"; | char *term; | double value; | value = strtod (string, &term); | if (value != 69 || term != (string + 4)) | exit (1); | } | | { | /* Under Solaris 2.4, strtod returns the wrong value for the | terminating character under some conditions. */ | char *string = "NaN"; | char *term; | strtod (string, &term); | if (term != string && *(term - 1) == 0) | exit (1); | } | exit (0); | } | configure:22375: result: no configure:22386: checking for pow configure:22443: g++ -o conftest -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -Wall -O2 -fPIC conftest.cc >&5 configure:22449: $? = 0 configure:22453: test -z || test ! -s conftest.err configure:22456: $? = 0 configure:22459: test -s conftest configure:22462: $? = 0 configure:22474: result: yes configure:22558: checking for pow configure:22646: result: yes configure:22558: checking for sqrt configure:22615: g++ -o conftest -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -Wall -O2 -fPIC conftest.cc >&5 configure:22621: $? = 0 configure:22625: test -z || test ! -s conftest.err configure:22628: $? = 0 configure:22631: test -s conftest configure:22634: $? = 0 configure:22646: result: yes configure:22857: creating ./config.status ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by MTK++ config.status 0.2.0, which was generated by GNU Autoconf 2.59. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status on eric2 config.status:806: creating Makefile config.status:806: creating doc/Makefile config.status:806: creating doc/pics/Makefile config.status:806: creating doc/pics/MDLFormat/Makefile config.status:806: creating doc/pics/fragments/Makefile config.status:806: creating doc/pics/functionalize/Makefile config.status:806: creating doc/pics/hybridize/Makefile config.status:806: creating doc/pics/hydrophobic/Makefile config.status:806: creating doc/pics/ring/Makefile config.status:806: creating doc/Doxyfile config.status:806: creating doc/local/Makefile config.status:806: creating data/Makefile config.status:806: creating data/fragLib/Makefile config.status:806: creating data/metals/Makefile config.status:806: creating data/nmr/Makefile config.status:806: creating data/hybridize/Makefile config.status:806: creating data/ZAFF/Makefile config.status:806: creating data/nonStandardAAs/Makefile config.status:806: creating data/PAM/Makefile config.status:806: creating scripts/Makefile config.status:806: creating scripts/shell/Makefile config.status:806: creating examples/Makefile config.status:806: creating examples/capActiveSite/Makefile config.status:806: creating examples/frcmod2xml/Makefile config.status:806: creating examples/func/Makefile config.status:806: creating examples/hybrid/Makefile config.status:806: creating examples/MCPB/Makefile config.status:806: creating examples/MCPB/data/Makefile config.status:806: creating examples/mmE/Makefile config.status:806: creating examples/pdbSearcher/Makefile config.status:806: creating examples/prep2xml/Makefile config.status:806: creating examples/protonator/Makefile config.status:806: creating examples/sequenceAligner/Makefile config.status:806: creating examples/stats/Makefile config.status:806: creating examples/stats/pca1/Makefile config.status:806: creating examples/stdLib2Sdf/Makefile config.status:806: creating examples/superimposer/Makefile config.status:806: creating src/Makefile config.status:806: creating src/Log/Makefile config.status:806: creating src/tinyxml/Makefile config.status:806: creating src/Diagnostics/Makefile config.status:806: creating src/Statistics/Makefile config.status:806: creating src/Molecule/Makefile config.status:806: creating src/Parsers/Makefile config.status:806: creating src/MM/Makefile config.status:806: creating src/GA/Makefile config.status:806: creating src/Minimizers/Makefile config.status:806: creating src/Graph/Makefile config.status:806: creating src/Utils/Makefile config.status:806: creating tests/Makefile config.status:806: creating tools/Makefile config.status:910: creating config.h config.status:1082: config.h is unchanged config.status:1262: executing depfiles commands ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-redhat-linux-gnu ac_cv_build_alias=x86_64-redhat-linux-gnu ac_cv_c_compiler_gnu=yes ac_cv_c_const=yes ac_cv_c_inline=inline ac_cv_cxx_compiler_gnu=yes ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_F77_set= ac_cv_env_F77_value= ac_cv_env_FFLAGS_set= ac_cv_env_FFLAGS_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_exeext= ac_cv_f77_compiler_gnu=yes ac_cv_func_pow=yes ac_cv_func_sqrt=yes ac_cv_func_strtod=no ac_cv_have_x='have_x=yes ac_x_includes=/usr/X11R6/include ac_x_libraries=/usr/X11R6/lib64' ac_cv_header_algorithm=yes ac_cv_header_cassert=yes ac_cv_header_cmath=yes ac_cv_header_complex=yes ac_cv_header_cstring=yes ac_cv_header_deque=yes ac_cv_header_dlfcn_h=yes ac_cv_header_fstream=yes ac_cv_header_inttypes_h=yes ac_cv_header_limits=yes ac_cv_header_list=yes ac_cv_header_memory_h=yes ac_cv_header_queue=yes ac_cv_header_stat_broken=no ac_cv_header_stdbool_h=yes ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_time_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_time=yes ac_cv_header_unistd_h=yes ac_cv_header_zlib_h=yes ac_cv_host=x86_64-redhat-linux-gnu ac_cv_host_alias=x86_64-redhat-linux-gnu ac_cv_objext=o ac_cv_path_PYTHON=/usr/bin/python ac_cv_path_SWIG=/usr/bin/swig ac_cv_path_install='/usr/local/packages/license/gaussian03/g03/bsd/install -c' ac_cv_prog_AWK=gawk ac_cv_prog_CPP='gcc -E' ac_cv_prog_CXXCPP='g++ -E' ac_cv_prog_ac_ct_AR=ar ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_ac_ct_CXX=g++ ac_cv_prog_ac_ct_F77=g77 ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_ac_ct_STRIP=strip ac_cv_prog_cc_g=yes ac_cv_prog_cc_stdc= ac_cv_prog_cxx_g=yes ac_cv_prog_diff_ok=yes ac_cv_prog_dot_ok=no ac_cv_prog_doxygen_ok=yes ac_cv_prog_dvips_ok=yes ac_cv_prog_egrep='grep -E' ac_cv_prog_f77_g=yes ac_cv_prog_gs_ok=yes ac_cv_prog_latex_ok=yes ac_cv_prog_make_make_set=yes ac_cv_type__Bool=no am_cv_CC_dependencies_compiler_type=gcc3 am_cv_CXX_dependencies_compiler_type=gcc3 lt_cv_deplibs_check_method=pass_all lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file='/lib/libc.so.6 /lib/libc-2.3.4.so' lt_cv_ld_reload_flag=-r lt_cv_objdir=.libs lt_cv_path_LD=/usr/bin/ld lt_cv_path_LDCXX='/usr/bin/ld -m elf_x86_64' lt_cv_path_NM='/usr/bin/nm -B' lt_cv_path_SED=/bin/sed lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_c_o_CXX=yes lt_cv_prog_compiler_c_o_F77=yes lt_cv_prog_compiler_rtti_exceptions=no lt_cv_prog_gnu_ld=yes lt_cv_prog_gnu_ldcxx=yes lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\(\)\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2\3 \3/p'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (lt_ptr) 0},/p'\'' -e '\''s/^[BCDEGRST] \([^ ]*\) \([^ ]*\)$/ {"\2", (lt_ptr) \&\2},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^. .* \(.*\)$/extern int \1;/p'\''' lt_cv_sys_max_cmd_len=32768 lt_lt_cv_prog_compiler_c_o='"yes"' lt_lt_cv_prog_compiler_c_o_CXX='"yes"' lt_lt_cv_prog_compiler_c_o_F77='"yes"' lt_lt_cv_sys_global_symbol_pipe='"sed -n -e '\''s/^.*[ ]\\([ABCDGIRSTW][ABCDGIRSTW]*\\)[ ][ ]*\\(\\)\\([_A-Za-z][_A-Za-z0-9]*\\)\$/\\1 \\2\\3 \\3/p'\''"' lt_lt_cv_sys_global_symbol_to_c_name_address='"sed -n -e '\''s/^: \\([^ ]*\\) \$/ {\\\"\\1\\\", (lt_ptr) 0},/p'\'' -e '\''s/^[BCDEGRST] \\([^ ]*\\) \\([^ ]*\\)\$/ {\"\\2\", (lt_ptr) \\&\\2},/p'\''"' lt_lt_cv_sys_global_symbol_to_cdecl='"sed -n -e '\''s/^. .* \\(.*\\)\$/extern int \\1;/p'\''"' ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /home/naveenks/MTKpp_2.0/missing --run aclocal-1.9' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='${SHELL} /home/naveenks/MTKpp_2.0/missing --run tar' AR='ar' AUTOCONF='${SHELL} /home/naveenks/MTKpp_2.0/missing --run autoconf' AUTOHEADER='${SHELL} /home/naveenks/MTKpp_2.0/missing --run autoheader' AUTOMAKE='${SHELL} /home/naveenks/MTKpp_2.0/missing --run automake-1.9' AWK='gawk' CC='gcc' CCDEPMODE='depmode=gcc3' CFLAGS='-DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -Wall -O2 -fPIC' CPP='gcc -E' CPPFLAGS='' CXX='g++' CXXCPP='g++ -E' CXXDEPMODE='depmode=gcc3' CXXFLAGS='-DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -Wall -O2 -fPIC' CXXLD='$(CXX)' CYGPATH_W='echo' DEFS='-DHAVE_CONFIG_H' DEPDIR='.deps' DIFFTOOL_FALSE='#' DIFFTOOL_TRUE='' DOC_ON_FALSE='' DOC_ON_TRUE='#' ECHO='echo' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='grep -E' EXEEXT='' F77='g77' FFLAGS='-g -O2' GOT_DOT_FALSE='' GOT_DOT_TRUE='#' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='${SHELL} $(install_sh) -c -s' IS_DARWIN_FALSE='' IS_DARWIN_TRUE='#' IS_LINUX_FALSE='#' IS_LINUX_TRUE='' LDFLAGS='' LIBOBJS=' strtod$U.o' LIBS='' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LIBTOOL_DEPS='./ltmain.sh' LN_S='ln -s' LTLIBOBJS=' strtod$U.lo' MAINT='#' MAINTAINER_MODE_FALSE='' MAINTAINER_MODE_TRUE='#' MAKEINFO='${SHELL} /home/naveenks/MTKpp_2.0/missing --run makeinfo' MOC='' OBJEXT='o' PACKAGE='MTKpp' PACKAGE_BUGREPORT='martin.b.peters@gmail.com' PACKAGE_NAME='MTK++' PACKAGE_STRING='MTK++ 0.2.0' PACKAGE_TARNAME='MTKpp' PACKAGE_VERSION='0.2.0' PATH_SEPARATOR=':' POW_LIB='' PYTHON='/usr/bin/python' QT_CXXFLAGS='' QT_DEFINES='' QT_INCPATH='' QT_LIBS='' RANLIB='ranlib' SET_MAKE='' SHELL='/bin/sh' STRIP='strip' SWIG='/usr/bin/swig' UIC='' USE_LOG4CXX_FALSE='' USE_LOG4CXX_TRUE='#' USE_QT_FALSE='' USE_QT_TRUE='#' USE_XERCES_FALSE='' USE_XERCES_TRUE='#' VERSION='0.2.0' ac_ct_AR='ar' ac_ct_CC='gcc' ac_ct_CXX='g++' ac_ct_F77='g77' ac_ct_RANLIB='ranlib' ac_ct_STRIP='strip' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='#' am__fastdepCXX_TRUE='' am__include='include' am__leading_dot='.' am__quote='' am__tar='${AMTAR} chof - "$$tardir"' am__untar='${AMTAR} xf -' bindir='${exec_prefix}/bin' boost_inc='/home/naveenks/MTKpp_2.0/lib/boost_1_38_0' build='x86_64-redhat-linux-gnu' build_alias='' build_cpu='x86_64' build_os='linux-gnu' build_vendor='redhat' datadir='${prefix}/share' defines_string=' -DUSE_TINYXML -DTIXML_USE_STL-DC99_OK -DLINUX ' diff_ok='yes' docdir='/home/naveenks/doc' dot_ok='no' doxygen_ok='yes' dvips_ok='yes' exec_prefix='${prefix}' gs_ok='yes' host='x86_64-redhat-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='redhat' includedir='${prefix}/include' infodir='${prefix}/info' install_sh='/home/naveenks/MTKpp_2.0/install-sh' latex_ok='yes' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localstatedir='${prefix}/var' log4cxx_inc='' mandir='${prefix}/man' mkdir_p='mkdir -p --' oldincludedir='/usr/include' platform='LINUX' prefix='/home/naveenks' program_transform_name='s,x,x,' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='${prefix}/etc' target_alias='' xerces_path='' ## ----------- ## ## confdefs.h. ## ## ----------- ## #define C99_OK 1 #define HAVE_ALGORITHM 1 #define HAVE_CASSERT 1 #define HAVE_CMATH 1 #define HAVE_COMPLEX 1 #define HAVE_CSTRING 1 #define HAVE_DEQUE 1 #define HAVE_DLFCN_H 1 #define HAVE_FSTREAM 1 #define HAVE_INTTYPES_H 1 #define HAVE_LIMITS 1 #define HAVE_LIST 1 #define HAVE_MEMORY_H 1 #define HAVE_POW 1 #define HAVE_QUEUE 1 #define HAVE_SQRT 1 #define HAVE_STDBOOL_H 1 #define HAVE_STDINT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING 1 #define HAVE_STRINGS_H 1 #define HAVE_STRING_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_SYS_TIME_H 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_UNISTD_H 1 #define HAVE_ZLIB_H 1 #define HOST_LINUX 1 #define PACKAGE "MTKpp" #define PACKAGE_BUGREPORT "martin.b.peters@gmail.com" #define PACKAGE_NAME "MTK++" #define PACKAGE_STRING "MTK++ 0.2.0" #define PACKAGE_TARNAME "MTKpp" #define PACKAGE_VERSION "0.2.0" #define STDC_HEADERS 1 #define STDC_HEADERS 1 #define TIME_WITH_SYS_TIME 1 #define USE_LOG4CXX 0 #define USE_TINYXML 1 #define VERSION "0.2.0" #endif #ifdef __cplusplus extern "C" void exit (int) throw (); configure: exit 0