Amber Archive Apr 2011 by thread
- [AMBER] Ptraj Mask option Rajeswari A. (Fri Apr 01 2011 - 00:03:42 PDT)
- Re: [AMBER] Amber CUDA calcualtion on GeForce GTX 590 ? Marek Maly (Fri Apr 01 2011 - 03:32:12 PDT)
- [AMBER] bond command in tlaep mish (Fri Apr 01 2011 - 06:20:11 PDT)
- [AMBER] restart from stopped MMPBSA.py.MPI job Christoph Malisi (Fri Apr 01 2011 - 07:06:04 PDT)
- [AMBER] positive TdS Hector A. Baldoni (Fri Apr 01 2011 - 09:26:01 PDT)
- [AMBER] making lib file Mark M Huntress (Fri Apr 01 2011 - 10:57:46 PDT)
- [AMBER] PBSA calculations for wild type and a mutant Mahmoud Soliman (Fri Apr 01 2011 - 13:15:09 PDT)
- [AMBER] mm_pbsa.pl error Mahmoud Soliman (Sat Apr 02 2011 - 12:08:18 PDT)
- [AMBER] water mediated interaction Sangita Kachhap (Sun Apr 03 2011 - 08:47:59 PDT)
- Re: [AMBER] Missing Parameters Melanie (Sun Apr 03 2011 - 16:24:32 PDT)
- [AMBER] ptraj rmsd Sarah Eliabeth Rowe (Mon Apr 04 2011 - 07:00:19 PDT)
- [AMBER] MMPBSA.py pairwise decomp Christoph Malisi (Mon Apr 04 2011 - 07:11:29 PDT)
- [AMBER] MMPBSA.py ala-scanning output results Jesper Sørensen (Mon Apr 04 2011 - 07:13:17 PDT)
- [AMBER] Question about Amber output file format TAEJIN KIM (Mon Apr 04 2011 - 07:45:51 PDT)
- [AMBER] sleap with ff02pol.r1 r smith (Mon Apr 04 2011 - 07:54:19 PDT)
- [AMBER] Umbrella sampling procedure siddesh southekal (Mon Apr 04 2011 - 08:50:15 PDT)
- [AMBER] Can I use PMF to study protein-protein complex formation? Catein Catherine (Mon Apr 04 2011 - 08:51:30 PDT)
- [AMBER] No mdcrd file with PMEMD Indrek Morell (Mon Apr 04 2011 - 10:22:14 PDT)
- [AMBER] PMEMD and NEB? patrick wintrode (Mon Apr 04 2011 - 11:53:10 PDT)
- Re: [AMBER] No mdcrd file with PMEMD reply Jason Swails (Mon Apr 04 2011 - 12:24:56 PDT)
- [AMBER] Error im mm_pbsa.pl vani panguluri (Mon Apr 04 2011 - 16:11:40 PDT)
- [AMBER] Sugar ring conformation (QM/MM Vs MM) Mahmoud Soliman (Mon Apr 04 2011 - 21:05:17 PDT)
- [AMBER] SDSC Dmitry Mukha (Tue Apr 05 2011 - 02:00:53 PDT)
- [AMBER] Modified REMD Almudena Pino (Tue Apr 05 2011 - 04:10:36 PDT)
- [AMBER] bad atom type Bernhard Poll (Tue Apr 05 2011 - 07:56:34 PDT)
- [AMBER] Solute concentration in MD Lekpa Duukori (Tue Apr 05 2011 - 08:26:09 PDT)
- Re: [AMBER] How to rename GLYCAM residue names of a sugar to the same name for one complete sugar (in tleap or xleap) mish (Tue Apr 05 2011 - 09:20:38 PDT)
- Re: [AMBER] Possibly wrong dihedrals assignment in the frcmod.parmbsc0 file Thomas Cheatham III (Tue Apr 05 2011 - 09:31:08 PDT)
- [AMBER] Umbrella sampling Sangita Kachhap (Tue Apr 05 2011 - 10:55:42 PDT)
- Re: [AMBER] parameter for CNTs Jagur Lambix (Tue Apr 05 2011 - 15:21:25 PDT)
- [AMBER] how to estimate the free energy of folding for the C-terminal of a protein? Jose Borreguero (Tue Apr 05 2011 - 17:46:05 PDT)
- [AMBER] is GBSA applicable to organic solvent? Junjian Miao (Tue Apr 05 2011 - 20:47:53 PDT)
- [AMBER] amber8-package Rilei Yu (Wed Apr 06 2011 - 01:54:23 PDT)
- [AMBER] Se atom type in GAFF Jon Mikel Azpiroz (Wed Apr 06 2011 - 02:33:57 PDT)
- [AMBER] The following error i got at the end of MM_PBSA.pl vani panguluri (Wed Apr 06 2011 - 04:18:21 PDT)
- [AMBER] Problem on SMD Rilei Yu (Wed Apr 06 2011 - 07:15:02 PDT)
- [AMBER] Query regarding considering water molecules sonam bhatia (Wed Apr 06 2011 - 08:46:02 PDT)
- [AMBER] Vector analysis John S (Wed Apr 06 2011 - 09:01:02 PDT)
- Re: [AMBER] problem about addions Ross Walker (Wed Apr 06 2011 - 13:42:46 PDT)
- [AMBER] Thermodynamic Integration--Input doubt Rajesh Raju (Wed Apr 06 2011 - 14:32:19 PDT)
- [AMBER] how to obtain 4x4x1.1nm water MD (Wed Apr 06 2011 - 21:16:20 PDT)
- [AMBER] output file for contacts John S (Wed Apr 06 2011 - 22:20:44 PDT)
- [AMBER] MMPBSA error Kshatresh Dutta Dubey (Thu Apr 07 2011 - 00:52:41 PDT)
- [AMBER] CHAMBER conversion: problem with IFBOX == 0 Marc van der Kamp (Thu Apr 07 2011 - 00:53:18 PDT)
- [AMBER] parameter about pbsa for sander juan zeng (Thu Apr 07 2011 - 02:07:49 PDT)
- [AMBER] questions about packmol Junjian Miao (Thu Apr 07 2011 - 07:19:26 PDT)
- [AMBER] potential energy from remd Jorgen Simonsen (Thu Apr 07 2011 - 09:50:47 PDT)
- [AMBER] MMPBSA.py Tests Aldo Segura (Thu Apr 07 2011 - 13:23:11 PDT)
- [AMBER] problems when using mm_pbsa.pl in Amber10 cwt (Thu Apr 07 2011 - 22:58:40 PDT)
- [AMBER] new AmberTools Aust, Susanne (Thu Apr 07 2011 - 23:28:13 PDT)
- [AMBER] recalculating atom charges Dachuan Guo (Thu Apr 07 2011 - 23:51:42 PDT)
- [AMBER] Default values nicholus bhattacharjee (Fri Apr 08 2011 - 01:33:12 PDT)
- [AMBER] problem of installation of MMPBSA.py fancy2012 (Fri Apr 08 2011 - 01:38:52 PDT)
- [AMBER] Maximum number of atoms tommaso.casalini.mail.polimi.it (Fri Apr 08 2011 - 01:40:32 PDT)
- [AMBER] Compare simulations done with AMBER9 to ones done with AMBER11 Cuda? Antje Wolf (Fri Apr 08 2011 - 02:45:34 PDT)
- [AMBER] About of MMPBSA.py results Aldo Segura (Fri Apr 08 2011 - 06:46:00 PDT)
- [AMBER] Problem compiling sander.PUPIL: No rule to build target 'mdread.PUPIL.o' ivanquirino1928.gmail.com (Fri Apr 08 2011 - 07:17:08 PDT)
- [AMBER] pmemd.cuda crashes due to "Inconsistent hydrogen network" Marc van der Kamp (Fri Apr 08 2011 - 08:06:45 PDT)
- [AMBER] Problem with trajin Lui (Fri Apr 08 2011 - 08:48:50 PDT)
- [AMBER] Heme .lib file for heme - problem Indrek Morell (Fri Apr 08 2011 - 09:48:55 PDT)
- [AMBER] QUESTION ON MMPBSA vani panguluri (Fri Apr 08 2011 - 10:01:09 PDT)
- [AMBER] Restraint potential in Targeted MD Rahul Banerjee (Fri Apr 08 2011 - 10:56:52 PDT)
- [AMBER] rfree: Error decoding variable 1 3 from: pmemd.MPI and pmemd error miriam sgobba (Fri Apr 08 2011 - 11:03:21 PDT)
- [AMBER] tleap problem George Tzotzos (Fri Apr 08 2011 - 14:07:49 PDT)
- [AMBER] tleap problem George Tzotzos (Fri Apr 08 2011 - 14:11:43 PDT)
- [AMBER] distance criteria of TIP3P added to protein-DNA complex Sangita Kachhap (Sat Apr 09 2011 - 09:20:35 PDT)
- [AMBER] Editing Protein - Change Bond Melanie (Sun Apr 10 2011 - 02:37:28 PDT)
- [AMBER] Uninstalling Amber Tools majid hasan (Sun Apr 10 2011 - 11:30:05 PDT)
- [AMBER] Error in installing Amber Tools majid hasan (Sun Apr 10 2011 - 12:40:40 PDT)
- [AMBER] Error in running MMPBSA.py.MPI with sander.APBS Wei Huang (Sun Apr 10 2011 - 15:52:55 PDT)
- [AMBER] creating ssdna from dsdna majid hasan (Sun Apr 10 2011 - 17:23:31 PDT)
- [AMBER] AMBER Shesh Nath (Sun Apr 10 2011 - 21:24:04 PDT)
- [AMBER] Multiple links QM-MM Shruti Koulgi (Mon Apr 11 2011 - 02:21:37 PDT)
- [AMBER] peptide-protein complex construction J.F.Jiang (Mon Apr 11 2011 - 04:29:53 PDT)
- [AMBER] problem with ptraj trajout in ambertools moitrayee.mbu.iisc.ernet.in (Mon Apr 11 2011 - 09:20:17 PDT)
- [AMBER] ambertools 1.5 Francesco Oteri (Mon Apr 11 2011 - 10:34:51 PDT)
- [AMBER] segmentation fault on antechamber when using carbon nano tube Bongkeun Kim (Mon Apr 11 2011 - 13:01:48 PDT)
- [AMBER] solvate with crystal water Hashem Taha (Mon Apr 11 2011 - 13:09:58 PDT)
- [AMBER] steered MD versus umbrella sampling? Jose Borreguero (Mon Apr 11 2011 - 14:12:02 PDT)
- [AMBER] AmberTools install Michael Forrester (Mon Apr 11 2011 - 21:50:35 PDT)
- [AMBER] Error on running parameter 'sander' Sanjay kundu (Mon Apr 11 2011 - 22:52:53 PDT)
- [AMBER] How to modify .pdb file for Amber input MD (Tue Apr 12 2011 - 00:09:05 PDT)
- [AMBER] MD with preset start/end structures Bernhard Poll (Tue Apr 12 2011 - 04:43:17 PDT)
- [AMBER] QMMM Jurica Novak (Tue Apr 12 2011 - 05:13:14 PDT)
- [AMBER] Processors, cores and threads Hopkins, Robert (Tue Apr 12 2011 - 09:14:32 PDT)
- [AMBER] errors compiling amber11 for cuda Robert Wohlhueter (Tue Apr 12 2011 - 09:19:04 PDT)
- [AMBER] python and perl versions of mmpbsa anyiphysics.gmail.com (Tue Apr 12 2011 - 09:22:15 PDT)
- [AMBER] Beggining with AMBER Fernando Blanco (Tue Apr 12 2011 - 10:00:21 PDT)
- [AMBER] Calculation of forces using steered MD Ali M. Naserian-Nik (Tue Apr 12 2011 - 10:17:05 PDT)
- [AMBER] fe4s4 cubane force field parameters Hugh Cheng (Tue Apr 12 2011 - 11:54:10 PDT)
- [AMBER] how did the SALTCON parameter work in MMPBSA? Yao-Chi Chen (Tue Apr 12 2011 - 12:12:01 PDT)
- [AMBER] another AmberTools problem Michael Forrester (Tue Apr 12 2011 - 12:36:31 PDT)
- [AMBER] Fwd: docked complex file preparation siddesh southekal (Mon Apr 11 2011 - 10:44:17 PDT)
- [AMBER] Spatial Distribution Functions Agostino Bruno (Fri Apr 08 2011 - 07:10:10 PDT)
- [AMBER] problem of using leap fancy2012 (Tue Apr 12 2011 - 19:46:47 PDT)
- Re: [AMBER] Coupled torsions from Amber Ross Walker (Tue Apr 12 2011 - 22:41:26 PDT)
- [AMBER] mmpbsa - nmode calculation Sangita Kachhap (Wed Apr 13 2011 - 00:40:39 PDT)
- [AMBER] velocity units Dmitry Mukha (Wed Apr 13 2011 - 07:04:49 PDT)
- [AMBER] comparing order parameters from MD and NMR Brendan Duggan (Wed Apr 13 2011 - 07:11:44 PDT)
- [AMBER] Problem with VMD juzer stationwala (Wed Apr 13 2011 - 07:34:34 PDT)
- [AMBER] Error while installing amber11 sonali dhindwal (Wed Apr 13 2011 - 07:42:15 PDT)
- [AMBER] Implicit solvent and box Elisa Frezza (Wed Apr 13 2011 - 08:49:50 PDT)
- [AMBER] mmpbsa.py input - radii to use Jesper Sørensen (Wed Apr 13 2011 - 08:54:50 PDT)
- [AMBER] Non bonded interactions Lekpa Duukori (Wed Apr 13 2011 - 09:31:51 PDT)
- [AMBER] nucleosides Steven M. Graham (Wed Apr 13 2011 - 14:33:10 PDT)
- [AMBER] Does AMBER 9 has parameters for ions F- Br- I- etc MD (Wed Apr 13 2011 - 20:00:55 PDT)
- [AMBER] missing coordinates from pdb Sangita Kachhap (Wed Apr 13 2011 - 23:28:30 PDT)
- [AMBER] Usage of diffuse command kurisaki (Wed Apr 13 2011 - 23:46:46 PDT)
- [AMBER] No data for 0+0 MM BOND 0 mirage . (Thu Apr 14 2011 - 00:30:46 PDT)
- Re: [AMBER] MMPBSA.py.MPI error! mmpbsa amber (Thu Apr 14 2011 - 01:27:35 PDT)
- [AMBER] MMPBSA.py.MPI error 陳昭同 (Thu Apr 14 2011 - 02:34:04 PDT)
- [AMBER] Leap error with Zinc ions Manish Datt (Thu Apr 14 2011 - 07:22:29 PDT)
- [AMBER] How to find Acetyl-coa parameters in R.E.D.DB? Yuan Yao (Thu Apr 14 2011 - 09:26:39 PDT)
- [AMBER] Error in Installing MTK++ software Naveen Samala (Thu Apr 14 2011 - 12:58:29 PDT)
- [AMBER] Error on compiling cuda_parallel; MPI_Win is undefined Bongkeun Kim (Thu Apr 14 2011 - 13:02:32 PDT)
- [AMBER] a problem about tutorial A12 Junjian Miao (Thu Apr 14 2011 - 07:09:03 PDT)
- [AMBER] momentum from trajectory peker milas (Thu Apr 14 2011 - 17:24:49 PDT)
- [AMBER] masking in the QMMM input setyanto md (Thu Apr 14 2011 - 21:25:43 PDT)
- [AMBER] Release of AmberTools 1.5 David A Case (Fri Apr 15 2011 - 05:48:14 PDT)
- [AMBER] Restraining non-bonded atoms nicholus bhattacharjee (Fri Apr 15 2011 - 06:01:54 PDT)
- [AMBER] Query about charge on magnesium Vaibhav Jain (Fri Apr 15 2011 - 07:07:16 PDT)
- [AMBER] PMF calculations Mahmoud Soliman (Fri Apr 15 2011 - 11:06:11 PDT)
- [AMBER] puzzle ahout constructing .prepin hanlu0366 (Fri Apr 15 2011 - 18:54:40 PDT)
- [AMBER] coordinate updates nicholus bhattacharjee (Fri Apr 15 2011 - 22:01:37 PDT)
- [AMBER] NEB calculations in enzyme? Mahmoud Soliman (Sun Apr 17 2011 - 08:49:58 PDT)
- [AMBER] Can i addIons F- Br- I- using AMBER 9 MD (Sun Apr 17 2011 - 18:35:18 PDT)
- [AMBER] Number of MMPBSA_Nmode run Sangita Kachhap (Mon Apr 18 2011 - 01:31:35 PDT)
- [AMBER] Restraining distance between a protein atom and a water of crystalization nicholus bhattacharjee (Mon Apr 18 2011 - 02:46:17 PDT)
- [AMBER] Error installing amber9 for mpi(sander.MPI) Sanjay kundu (Mon Apr 18 2011 - 03:01:24 PDT)
- [AMBER] leap solvateoct question Bala subramanian (Mon Apr 18 2011 - 03:23:59 PDT)
- [AMBER] SQM Dachuan Guo (Mon Apr 18 2011 - 06:57:16 PDT)
- Re: [AMBER] amber parameters for Ni Ben Roberts (Mon Apr 18 2011 - 08:34:18 PDT)
- [AMBER] strange background job crash Bala subramanian (Mon Apr 18 2011 - 08:44:02 PDT)
- [AMBER] MCPB instructions (was: Re: MCPB program - how to download) Ben Roberts (Mon Apr 18 2011 - 08:45:00 PDT)
- [AMBER] 'shake problem' and soft core potential anyiphysics.gmail.com (Mon Apr 18 2011 - 12:05:55 PDT)
- [AMBER] Fwd: QUESTION ON MMPBSA Jason Swails (Mon Apr 18 2011 - 12:28:11 PDT)
- [AMBER] Regarding antechamber Naveen Samala (Mon Apr 18 2011 - 13:09:30 PDT)
- [AMBER] parallel QM/MM/MD lasts forever Mahmoud Soliman (Tue Apr 19 2011 - 00:17:37 PDT)
- [AMBER] dealing with xleap Sajad Ahrari (Tue Apr 19 2011 - 02:22:07 PDT)
- [AMBER] Electrostatic term Eliac Brown (Tue Apr 19 2011 - 02:30:13 PDT)
- [AMBER] ambertools 1.5, python and Mac Alan Wilter Sousa da Silva (Tue Apr 19 2011 - 03:19:49 PDT)
- [AMBER] GPU Technology Conference, Singapore Oxana Plis (Tue Apr 19 2011 - 03:30:25 PDT)
- [AMBER] AMBER 11 pbsa errors Dmitry Osolodkin (Tue Apr 19 2011 - 05:42:05 PDT)
- [AMBER] MMPBSA default input anyiphysics.gmail.com (Tue Apr 19 2011 - 08:02:29 PDT)
- [AMBER] PMF Elisa Frezza (Tue Apr 19 2011 - 08:40:29 PDT)
- [AMBER] Regarding understanding MTK++ Document Naveen Samala (Tue Apr 19 2011 - 09:41:49 PDT)
- [AMBER] Ambertools SDK Francesco Oteri (Tue Apr 19 2011 - 09:54:13 PDT)
- [AMBER] what do rdparm dihedral numbers mean? david condon (Tue Apr 19 2011 - 09:57:50 PDT)
- [AMBER] Best Force Field for Beta Peptides Zachary Davis (Tue Apr 19 2011 - 11:54:49 PDT)
- [AMBER] MMPBSA.py error Gabriel Urquiza (Tue Apr 19 2011 - 19:34:37 PDT)
- [AMBER] Side Chain Model building by MCPB Vo Cam Quy (Wed Apr 20 2011 - 09:11:12 PDT)
- [AMBER] Installation Amber Tools 1.5 juzer stationwala (Wed Apr 20 2011 - 10:31:51 PDT)
- [AMBER] Regarding MTK++ MCPB tutorials on Small and Large Models of ZN Metalloprotein Naveen Samala (Wed Apr 20 2011 - 12:55:46 PDT)
- [AMBER] Question about ptraj artifacts Kamali Sripathi (Wed Apr 20 2011 - 13:06:30 PDT)
- [AMBER] failures in tests of amber tools 1.5 juzer stationwala (Wed Apr 20 2011 - 22:31:26 PDT)
- [AMBER] PMEMD does not support intermolecular PRFs! vhakkim boy (Thu Apr 21 2011 - 05:14:56 PDT)
- Re: [AMBER] gaussian Ben Roberts (Thu Apr 21 2011 - 07:04:05 PDT)
- [AMBER] Defining ligand and receptor within MMPBSA.py Oliver Kuhn (Thu Apr 21 2011 - 07:24:34 PDT)
- [AMBER] setting gbsa=0 does not switch off GB calculation Oliver Kuhn (Thu Apr 21 2011 - 09:26:30 PDT)
- [AMBER] MCPB help Hashem Taha (Thu Apr 21 2011 - 15:58:22 PDT)
- [AMBER] how to get initial inpcrd files in smd directory of tutorial A12? Junjian Miao (Thu Apr 21 2011 - 21:01:07 PDT)
- [AMBER] output velocities with ptraj Junjian Miao (Thu Apr 21 2011 - 23:49:36 PDT)
- [AMBER] RED conformation weights Junjian Miao (Sat Apr 23 2011 - 05:51:17 PDT)
- [AMBER] Problems with constant pH calc Amber 11 John Khan (Sat Apr 23 2011 - 15:22:21 PDT)
- [AMBER] mmpbsa, mdfil: Error unknown flag: not Andrew Voronkov (Sun Apr 24 2011 - 07:07:01 PDT)
- [AMBER] Equilibration: Using restraintmask George Tzotzos (Mon Apr 25 2011 - 04:53:53 PDT)
- Re: [AMBER] Amber 姜笑楠 (Mon Apr 25 2011 - 04:57:19 PDT)
- [AMBER] Xleap problem souvik sur (Mon Apr 25 2011 - 06:55:54 PDT)
- [AMBER] MMPBSA error Vaibhav Jain (Mon Apr 25 2011 - 08:16:46 PDT)
- [AMBER] changing restart file format from 6f12.7 to 6f12.6 Santosh Mogurampelly (Mon Apr 25 2011 - 23:30:26 PDT)
- [AMBER] MMPBSA.py (AmberTools 1.5) bug in Alanine Scanning (alamdcrd.py) Joseph André (Tue Apr 26 2011 - 02:48:27 PDT)
- [AMBER] End of protonate method with amber11? Guenegou, Guillaume [ORDFR] (Tue Apr 26 2011 - 04:54:38 PDT)
- [AMBER] Alanine scanning George Tzotzos (Tue Apr 26 2011 - 05:50:00 PDT)
- [AMBER] xleap problem souvik sur (Tue Apr 26 2011 - 06:21:17 PDT)
- [AMBER] usage of secstruct and atomicfluct py (Tue Apr 26 2011 - 06:24:26 PDT)
- [AMBER] Problem with cluster? Roman Osman (Tue Apr 26 2011 - 08:39:36 PDT)
- [AMBER] softcore potential and temperature anyiphysics.gmail.com (Tue Apr 26 2011 - 11:19:40 PDT)
- [AMBER] MTK++ : genMetalFF.sh is not generating gaussian input files Naveen Samala (Tue Apr 26 2011 - 15:22:45 PDT)
- [AMBER] xleap problem souvik sur (Tue Apr 26 2011 - 20:58:55 PDT)
- [AMBER] MCPB install problem setyanto md (Tue Apr 26 2011 - 23:28:09 PDT)
- [AMBER] Diffusion coefficient in implicit water tommaso.casalini.mail.polimi.it (Wed Apr 27 2011 - 02:07:53 PDT)
- [AMBER] error while editing charge table in Tutorial A1 by Dr. Walker Chinh Su Tran To (Wed Apr 27 2011 - 02:17:45 PDT)
- [AMBER] MMPBSA.py won't understand my trajectories Gabriel Urquiza (Wed Apr 27 2011 - 04:52:51 PDT)
- [AMBER] igb=8 available for MMPBSA.py ? Oliver Kuhn (Wed Apr 27 2011 - 07:48:20 PDT)
- [AMBER] Atom types in LYN side chain Paul S. Nerenberg (Wed Apr 27 2011 - 18:08:19 PDT)
- [AMBER] MMPBSA.py error - VDW **** Jesper Sørensen (Thu Apr 28 2011 - 00:29:08 PDT)
- [AMBER] Steered MD at constant force Ali M. Naserian-Nik (Thu Apr 28 2011 - 05:55:23 PDT)
- [AMBER] Usage of ambermask within MMPBSA.py Oliver Kuhn (Thu Apr 28 2011 - 06:04:33 PDT)
- [AMBER] Usage of Kongsted Ryde entropy method within MMPBSA.py Oliver Kuhn (Thu Apr 28 2011 - 06:18:12 PDT)
- [AMBER] building amber - meaning of file comparison problems? Vernon Bailey (Thu Apr 28 2011 - 09:07:27 PDT)
- [AMBER] Regarding Gaussian Calculations for MTK++ example- sidechain model Naveen Samala (Thu Apr 28 2011 - 09:23:07 PDT)
- [AMBER] compile errors with AmberTools1.5 + Amber11 Robert Wohlhueter (Thu Apr 28 2011 - 12:52:22 PDT)
- [AMBER] ptraj trajectory file size limits? Nicole A. Horenstein (Thu Apr 28 2011 - 20:14:27 PDT)
- [AMBER] Free Energy Perturbation in AMBER 10 Chirag Vora (Thu Apr 28 2011 - 21:41:57 PDT)
- [AMBER] Post-Processing MD trajectory sunita gupta (Fri Apr 29 2011 - 04:36:27 PDT)
- [AMBER] New equilibrated solvent box, how to use it? Samuel Genheden (Fri Apr 29 2011 - 05:28:15 PDT)
- [AMBER] parameters sodium phosfate Domenica Dibenedetto (Fri Apr 29 2011 - 07:10:09 PDT)
- [AMBER] forrtl: severe (64): input conversion error, unit -5, file Internal Formatted Read Katharina Lang (Fri Apr 29 2011 - 07:33:02 PDT)
- [AMBER] AmberTools 1.4 PGI failed antechamber/sustiva test Shan-ho Tsai (Fri Apr 29 2011 - 09:25:02 PDT)
- [AMBER] SURFTEN / SURFOFF values are not consistent across *.all.out files zhihong ke (Fri Apr 29 2011 - 09:29:18 PDT)
- [AMBER] umbrella sampling on a difference of distances RC. iccy liu (Fri Apr 29 2011 - 11:06:17 PDT)
- [AMBER] help with antechamber tsurma.umich.edu (Fri Apr 29 2011 - 12:12:35 PDT)
- [AMBER] help with antechamber tsurma.umich.edu (Fri Apr 29 2011 - 12:42:57 PDT)
- [AMBER] mmpbsa nmode problem Yi An (Fri Apr 29 2011 - 13:29:26 PDT)
- [AMBER] question on scmask Yi An (Fri Apr 29 2011 - 13:36:15 PDT)
- [AMBER] How to add a new force field to Amber 11 hanlu0366 (Fri Apr 29 2011 - 20:12:49 PDT)
- Last message date: Sat Apr 30 2011 - 17:30:02 PDT
- Archived on: Mon Dec 23 2024 - 05:54:12 PST
