
  \-/  
  -/-   PTRAJ: a utility for processing trajectory files
  /-\  
  \-/   Version: "AMBER 11.0 integrated" (4/2010)
  -/-   Executable is: "/package/chem/amber11/exe/ptraj"
  /-\   Running on 1 processor(s)
  \-/   Residue labels:

 ASP  ASP  TRP  GLU  ILE  PRO  ASP  GLY  GLN  ILE 
 THR  VAL  GLY  GLN  ARG  ILE  GLY  SER  GLY  SER 
 PHE  GLY  THR  VAL  TYR  LYS  GLY  LYS  TRP  HIE 
 GLY  ASP  VAL  ALA  VAL  LYS  MET  LEU  ASN  VAL 
 THR  ALA  PRO  THR  PRO  GLN  GLN  LEU  GLN  ALA 
 PHE  LYS  ASN  GLU  VAL  GLY  VAL  LEU  ARG  LYS 
 THR  ARG  HIE  VAL  ASN  ILE  LEU  LEU  PHE  MET 
 GLY  TYR  SER  THR  LYS  PRO  GLN  LEU  ALA  ILE 
 VAL  THR  GLN  TRP  CYS  GLU  GLY  SER  SER  LEU 
 TYR  HIE  HID  LEU  HIE  ILE  ILE  GLU  THR  LYS 
 PHE  GLU  MET  ILE  LYS  LEU  ILE  ASP  ILE  ALA 
 ARG  GLN  THR  ALA  GLN  GLY  MET  ASP  TYR  LEU 
 HIE  ALA  LYS  SER  ILE  ILE  HID  ARG  ASP  LEU 
 LYS  SER  ASN  ASN  ILE  PHE  LEU  HIE  GLU  ASP 
 LEU  THR  VAL  LYS  ILE  GLY  ASP  PHE  GLY  LEU 
 ALA  THR  GLU  LYS  SER  ARG  TRP  SER  GLY  SER 
 HID  GLN  PHE  GLU  GLN  LEU  SER  GLY  SER  ILE 
 LEU  TRP  MET  ALA  PRO  GLU  VAL  ILE  ARG  MET 
 GLN  ASP  LYS  ASN  PRO  TYR  SER  PHE  GLN  SER 
 ASP  VAL  TYR  ALA  PHE  GLY  ILE  VAL  LEU  TYR 
 GLU  LEU  MET  THR  GLY  GLN  LEU  PRO  TYR  SER 
 ASN  ILE  ASN  ASN  ARG  ASP  GLN  ILE  ILE  PHE 
 MET  VAL  GLY  ARG  GLY  TYR  LEU  SER  PRO  ASP 
 LEU  SER  LYS  VAL  ARG  SER  ASN  CYS  PRO  LYS 
 ALA  MET  LYS  ARG  LEU  MET  ALA  GLU  CYS  LEU 
 LYS  LYS  LYS  ARG  ASP  GLU  ARG  PRO  LEU  PHE 
 PRO  GLN  ILE  LEU  ALA  SER  ILE  GLU  LEU  LEU 
 ALA  ARG  SER  LEU  PRO  LYS  MOL 


PTRAJ: Processing input from file _MMPBSA_ligtraj.in

PTRAJ: trajin _MMPBSA_complex.mdcrd
  Checking coordinates: _MMPBSA_complex.mdcrd
Rank: 0 Atoms: 4505 FrameSize: 109472 TitleSize: 30 NumBox: 0 Seekable 1


PTRAJ: strip :1-276
Mask [:1-276] represents 4458 atoms

PTRAJ: trajout _MMPBSA_ligand.mdcrd nobox

PTRAJ: Successfully read the input file.
       Coordinate processing will occur on 1 frames.
       Summary of I/O and actions follows:

INPUT COORDINATE FILES
  File (_MMPBSA_complex.mdcrd) is an AMBER trajectory with 1 sets

OUTPUT COORDINATE FILE
  File (_MMPBSA_ligand.mdcrd) is an AMBER trajectory
ACTIONS
  1>  STRIP: 4458 atoms will be removed from trajectory: :1-276


Processing AMBER trajectory file _MMPBSA_complex.mdcrd

 100%


PTRAJ: Successfully read in 1 sets and processed 1 sets.

Dumping accumulated results (if any)

