[AMBER] RESP: optimized charges not reasonable

From: Ignacio Faustino Plo <ignacio.faustino.irbbarcelona.org>
Date: Mon, 28 Mar 2011 18:59:52 +0200

Dear member list,

I am running some calculations for getting the corresponding RESP charges for a modified nucleotide. After optimization and ESP calculation, RESP is giving huge atomic charges for some of the atoms (numbers like 3 or 4 are unreasonable). Could you give some advice on this issue?

Here is the input file I am using:

RESP calculation
 &cntrl
 ihfree=1,
 qwt=0.0005,
 iqopt=2
 /
1.0

   -1 35
    7 0
    6 0
    6 0
    6 0
    7 0
    6 0
    6 0
    6 0
    8 0
    7 0
    7 0
    1 0
    1 0
    1 0
    8 0
    6 0
    6 0
    6 0
    6 0
    1 0
    1 0
    1 0
    1 0
    1 0
    6 0
    8 0
    1 0
    1 0
    1 0
    8 0
    1 0
    1 0
   15 0
    8 0
    8 0
EOF

Thanks in advance.

Ignacio
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Received on Mon Mar 28 2011 - 10:30:03 PDT
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