> My system is an isolated water sphere of diameter 6nm plus a isolated
> cis-pinonic acid (a kind of dicarboxylic acid). The initial distance
> between the cis-pinonic acid and the center of the water sphere is 20 nm.
> I want to give the cis-pinonic acid an initial velocity towards the
> center of the water sphere.
I have never heard of Amber having the ability to assign a specified
initial velocity to a component of the system. I think you may have to
modify the code if you want this behavior.
Bill
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Received on Sun Mar 20 2011 - 14:30:02 PDT
