Dear Sir/ madam,
I have a problem to be solved.
Basically, I am simulating bilayer system.
The arrangement of lipids in bilayers are as bellow:
| | | | |
| | | | |
| | | | |
| | | | |
------> X direction
Normally, by conventional way, the long vertical axis shall be Z, horizontal axis shall be X and Y respectively.
I have several bilayers systems like this but all are not the same as conventional format as I mentioned above.
For some systems the long vertical axis become Y and the other two horizontal axis become Y and Z. This I think could be the reason using hyperchem to model the system.
This actually giving me problem now to select certain layer specifically during analysis.
I just curious to know is there any way by using PTRAJ or other tools to convert the problematic system as the conventional format?
I really appreciate any help. many thanks in advance.
Vijay
Vijay Manickam Achari
(Phd Student c/o Prof Rauzah Hashim)
Chemistry Department,
University of Malaya,
Malaysia
vjramana.gmail.com
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Received on Fri Mar 18 2011 - 04:00:03 PDT
