Re: [AMBER] AMBER 10 serial compile problem

From: Dmitry Osolodkin <>
Date: Tue, 15 Mar 2011 20:29:59 +0300

On 03/15/2011 08:24 PM, David A Case wrote:
>> You can choose
>> to skip using the MKL by unsetting MKL_HOME, and this error should go away.
> Note that this is likely to be a very good choice: performance difference for
> Amber with/without MKL are very minor. If you are having trouble with MKL,
> you might want to make sure you really need it.

Without MKL:

ifort -o addles lesmain.o addspace.o readprm.o writprm.o readcrd.o
writcrd.o pick.o rline.o nxt.o intgr.o find.o of.o
geti.o unit.o getc.o alert.o echo.o get4c.o getd.o
wlesprm.o lesprm.o les2prm.o checksz.o addspace_atm1st.o ../lib/random.o
../lib/mexit.o ../lib/nxtsec.o -lsvml
../lib/random.o: In function `amrand_gen_':
_random.f:(.text+0x3cb): undefined reference to `_gfortran_st_write'
_random.f:(.text+0x3e9): undefined reference to
_random.f:(.text+0x3f7): undefined reference to `_gfortran_st_write_done'
../lib/random.o: In function `gauss_gen_':

# bunch of similar lines

_nxtsec.f:(.text+0x2c80): undefined reference to `_gfortran_st_write_done'
_nxtsec.f:(.text+0x2c8c): undefined reference to `_gfortran_stop_numeric'
ld: addles: hidden symbol `__intel_cpu_indicator_init' in
is referenced by DSO
ld: final link failed: Nonrepresentable section on output
make[1]: *** [addles] Error 1

Dmitry Osolodkin
Group of Computational Molecular Design
Department of Chemistry
Moscow State University
Moscow 119991 Russia
Phone: +7-495-9393557
Fax: +7-495-9390290
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Received on Tue Mar 15 2011 - 11:00:04 PDT
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