Re: [AMBER] AMBER 10 serial compile problem

From: Jason Swails <jason.swails.gmail.com>
Date: Tue, 15 Mar 2011 10:06:17 -0700

Then you have to remove that one as well. All that means is the file
"libmkl.a" can't be found.

If you just remove those 2, then it'll fail if it's trying to link to MKL
libraries I would expect. Try looking at the advice I gave in my previous
email.

Good luck,
Jason

2011/3/15 Dmitry Osolodkin <divanych.rambler.ru>

> It sends the same complaint about -lmkl:
>
> ifort -o addles lesmain.o addspace.o readprm.o writprm.o readcrd.o
> writcrd.o pick.o rline.o nxt.o intgr.o find.o of.o
> geti.o unit.o getc.o alert.o echo.o get4c.o getd.o
> wlesprm.o lesprm.o les2prm.o checksz.o addspace_atm1st.o ../lib/random.o
> ../lib/mexit.o ../lib/nxtsec.o -lsvml
> -L/opt/intel/composerxe/mkl/lib/32 -lmkl -lguide -lpthread
> ld: cannot find -lmkl
> make[1]: *** [addles] Error 1
>
>
> On 03/15/2011 07:53 PM, David Watson wrote:
> > On Mar 15, 2011, at 11:35 AM, Dmitry Osolodkin wrote:
> >
> >> Hello list,
> >>
> >> I'm trying to compile serial 32-bit version of AMBER 10 with current
> >> version of Intel® Fortran Composer XE 2011 for Linux (2011.2.137). The
> >> compiler complains that:
> >>
> >> ifort -o addles lesmain.o addspace.o readprm.o writprm.o readcrd.o
> >> writcrd.o pick.o rline.o nxt.o intgr.o find.o of.o
> >> geti.o unit.o getc.o alert.o echo.o get4c.o getd.o
> >> wlesprm.o lesprm.o les2prm.o checksz.o addspace_atm1st.o ../lib/random.o
> >> ../lib/mexit.o ../lib/nxtsec.o -lsvml
> >> -L/opt/intel/composerxe/mkl/lib/32 -lmkl_lapack -lmkl -lguide -lpthread
> >> ld: cannot find -lmkl_lapack
> >> make[1]: *** [addles] Error 1
> >>
> >
> > Edit the configuration files to remove the -lmkl_lapack directive, and
> see if it compiles cleanly.
> >>
> >
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
>
> --
> Dmitry Osolodkin
> Researcher
> Group of Computational Molecular Design
> Department of Chemistry
> Moscow State University
> Moscow 119991 Russia
> e-mail: dmitry_o.qsar.chem.msu.ru
> Phone: +7-495-9393557
> Fax: +7-495-9390290
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>



-- 
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Tue Mar 15 2011 - 10:30:04 PDT
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