[AMBER] how to obtain 4x4x1.1nm water; how to add polarizable models

From: gromacs <ptf1242.163.com>
Date: Mon, 14 Mar 2011 20:44:42 +0800 (CST)

Hi everyone,

I use AMBER 9.
Can anybody tell me how to get 4x4x1.1 box, and then fill this box with water (e.g. pol3)?

what is the command? i need the input files.

and how can i add polarizable models which is not existed in AMBER 9 (e.g. i need other polarizable water models and other polarizable ions)? What files should i modify?

Thanks in advance!
AMBER mailing list
Received on Mon Mar 14 2011 - 06:00:03 PDT
Custom Search