Re: [AMBER] missing AMBER features for simulating surfaces and linear assemblies

From: Andrew Jewett <jewett.ai.gmail.com>
Date: Wed, 9 Mar 2011 13:08:31 -0800

On Wed, Mar 9, 2011 at 1:00 PM, Andrew Jewett <jewett.ai.gmail.com> wrote:
> 2)  Near line 89 of ew_box.f, replace the following do loop:
>
> !   ...now rigidly translate molecule
> do iatom = 1,num
>   i = i + 1
>   x(1,i) = x(1,i) + xmolnu - xmol
>   x(2,i) = x(2,i) + ymolnu - ymol
>   x(3,i) = x(3,i) + zmolnu - zmol
> end do
>
> ---with:---
>
> !   ...now rigidly translate molecule
> do iatom = 1,num
>   i = i + 1
>   if ((ibelly /= 2).or.(irescalemask(n) /= 0)) then
>      x(1,i) = x(1,i) + xmolnu - xmol
>      x(2,i) = x(2,i) + ymolnu - ymol
>      x(3,i) = x(3,i) + zmolnu - zmol
>   end if
> end do

Drat. I pasted the wrong text here (should be "i" not "n"). That
line should have been:

   if ((ibelly /= 2).or.(irescalemask(i) /= 0)) then

My apologies.

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Received on Wed Mar 09 2011 - 13:30:06 PST
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