Re: [AMBER] water mediated H-Bond

From: Bill Ross <ross.cgl.ucsf.EDU>
Date: Wed, 2 Mar 2011 11:45:34 -0800

> When I load processed mdcrd with new prmtop its not showing
> structure properly there is some long bonds.

Do the long bonds remain constant for each frame, or do they
change to different pairs of atoms? If you had the wrong number
of atoms in one file, I'd expect to see the first frame more
or less normal, then following frames having more long bonds.
As it is, it's hard to guess.


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Received on Wed Mar 02 2011 - 12:00:04 PST
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