> Convert this to pdb file, modify pdb retain only 10 water and then use it to
> generate new topology file in tleap.
Presumably there is no box.
> When I use this topology file to visualize above processed trajectry file
> structure was not proper there is some long bonds.
Maybe there's a box in mdcrd? If so, you would need to strip
it to be compatible with the the new prmtop.
Bill
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Received on Tue Mar 01 2011 - 10:30:04 PST
