Re: [AMBER] checking interaction between periodic images

From: Hannes Loeffler <>
Date: Tue, 1 Mar 2011 16:29:18 +0000

On Tue, 1 Mar 2011 11:37:04 +0100
Bala subramanian <> wrote:

> Is there any way to check if the protein makes any contact with its
> periodic image during the simulation done with pbc.

I have written a very simple routine for rectangular boxes that will
report all such distances below a chosen threshold. The shortest
distance is reported too.

Have a look at


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Received on Tue Mar 01 2011 - 09:00:04 PST
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