Amber Archive Mar 2011 by thread
- Re: [AMBER] Restart Problem: The results of an integrated simulation and restarted simulations are not equal! Ali M. Naserian-Nik (Tue Mar 01 2011 - 00:42:52 PST)
- [AMBER] checking interaction between periodic images Bala subramanian (Tue Mar 01 2011 - 02:37:04 PST)
- Re: [AMBER] How to defining a bond between the Cβ of the substrate and the Cα of the catalytic serine Jason Swails (Tue Mar 01 2011 - 05:41:15 PST)
- [AMBER] xleap not installed sonali dhindwal (Tue Mar 01 2011 - 05:56:24 PST)
- [AMBER] water mediated H-Bond Sangita Kachhap (Tue Mar 01 2011 - 09:37:31 PST)
- [AMBER] generalized Born question Francesco Oteri (Tue Mar 01 2011 - 10:21:00 PST)
- [AMBER] CHAMBER prmtop colvin (Tue Mar 01 2011 - 19:46:50 PST)
- [AMBER] Will no implementation of feupdateenv cause serious problems? kurisaki.ncube.human.nagoya-u.ac.jp (Tue Mar 01 2011 - 21:55:51 PST)
- Re: [AMBER] NPT simulation crash using a GPU CARD for a simulation carried out in a organic explicit solvent Antje Wolf (Tue Mar 01 2011 - 23:44:39 PST)
- Re: [AMBER] To fix dihedral angles during a simulation. Baptiste Legrand (Wed Mar 02 2011 - 02:08:37 PST)
- [AMBER] randomly place counterions thomas.fox.boehringer-ingelheim.com (Wed Mar 02 2011 - 02:55:55 PST)
- Re: [AMBER] MD simulation of protein with Calcium ion Dmitry Nilov (Wed Mar 02 2011 - 03:02:46 PST)
- Re: [AMBER] HEME parameters CHAMI F. (Wed Mar 02 2011 - 03:53:54 PST)
- Re: [AMBER] chamber Mark Williamson (Wed Mar 02 2011 - 08:18:27 PST)
- Re: [AMBER] pmemd.cuda issues on Tesla S2050 Sasha Buzko (Wed Mar 02 2011 - 09:54:08 PST)
- [AMBER] error reading NMR restraints Wong, Sergio E. (Wed Mar 02 2011 - 15:59:56 PST)
- [AMBER] total charge of NPRO in amber03 force field Ye MEI (Thu Mar 03 2011 - 02:52:23 PST)
- [AMBER] MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD with errorcode 1. hari krishna (Thu Mar 03 2011 - 03:07:36 PST)
- [AMBER] ptraj / water-medited hydrogen bonds leila karami (Thu Mar 03 2011 - 04:26:41 PST)
- [AMBER] Blowing array; too many frames!! Sangita Kachhap (Thu Mar 03 2011 - 04:33:30 PST)
- [AMBER] implicit solvent with cuda Francesco Oteri (Thu Mar 03 2011 - 04:44:07 PST)
- [AMBER] ptraj / water-mediated hydrogen bonds leila karami (Thu Mar 03 2011 - 05:11:39 PST)
- [AMBER] Unresolved problem about MM/PBSA 祥谦 孔 (Thu Mar 03 2011 - 08:01:07 PST)
- [AMBER] how to create periodic box similar to TIP3PBOX? Junjian Miao (Thu Mar 03 2011 - 17:32:35 PST)
- [AMBER] Zn Bond Length solvatebox Lowe, Ben (Ext) (Fri Mar 04 2011 - 02:25:53 PST)
- [AMBER] hydrogen bonding facility in ptraj Beale, John (Fri Mar 04 2011 - 05:38:11 PST)
- [AMBER] non standard Alanine Massimiliano Porrini (Fri Mar 04 2011 - 06:41:59 PST)
- [AMBER] AMBER parameters for lead Ganesh Kamath (Fri Mar 04 2011 - 12:24:48 PST)
- [AMBER] is it possible to identify each mode in Nmode calculation? zhihong ke (Fri Mar 04 2011 - 12:44:28 PST)
- [AMBER] using NMR restraints within LMOD Wong, Sergio E. (Fri Mar 04 2011 - 13:45:12 PST)
- [AMBER] building HA8 (hyaluronic acid 8-mer) using amber leap Madhurima Jana (Fri Mar 04 2011 - 21:36:04 PST)
- [AMBER] ACS COMP division awards for Fall 2011 meeting Carlos Simmerling (Sat Mar 05 2011 - 07:44:30 PST)
- [AMBER] Zn active site parameterization kala (Sun Mar 06 2011 - 11:59:04 PST)
- [AMBER] Showing torsion energy as a function of angle david condon (Sun Mar 06 2011 - 14:46:50 PST)
- [AMBER] missing AMBER features for simulating surfaces and linear assemblies Andrew Jewett (Mon Mar 07 2011 - 02:18:31 PST)
- [AMBER] Pressure regulation and position restraints Andrew Jewett (Mon Mar 07 2011 - 04:33:36 PST)
- [AMBER] how to deal with flexibility of peptide during prod. process asakiayumikio.gmail.com (Mon Mar 07 2011 - 05:57:37 PST)
- [AMBER] h-bond donor acceptor definition confusion Jio M (Mon Mar 07 2011 - 06:06:51 PST)
- [AMBER] forefile of acetyl coenzyme A asakiayumikio.gmail.com (Mon Mar 07 2011 - 06:07:27 PST)
- Re: [AMBER] how to deal with flexibility of peptide during prod. process asakiayumikio.gmail.com (Mon Mar 07 2011 - 06:28:24 PST)
- [AMBER] Fwd: Implicit solvent GB calculation Rubben Torella (Mon Mar 07 2011 - 07:04:35 PST)
- [AMBER] Problems with tleap Pegado Luis (Mon Mar 07 2011 - 10:42:55 PST)
- [AMBER] Is the neutralization necessary for the GB model? zhihong ke (Mon Mar 07 2011 - 13:24:19 PST)
- [AMBER] igb=1 and gbsa=0 Francesco Oteri (Mon Mar 07 2011 - 15:38:43 PST)
- [AMBER] a question about using oplsaa ff in amber Junjian Miao (Mon Mar 07 2011 - 20:12:35 PST)
- [AMBER] Request for a quotation of AMBER aseal.klyuniv.ac.in (Mon Mar 07 2011 - 23:38:14 PST)
- [AMBER] sander.MPI running on 8 nodes or 1?? colvin (Tue Mar 08 2011 - 01:11:03 PST)
- [AMBER] acceptance probabilities remd Jorgen Simonsen (Tue Mar 08 2011 - 02:02:59 PST)
- [AMBER] Problem installing Amber11/Ambertools1.4 on Ubuntu10.10 John Khan (Tue Mar 08 2011 - 10:01:59 PST)
- [AMBER] continuum solvation with low viscosity Mahmoud Soliman (Tue Mar 08 2011 - 12:28:05 PST)
- [AMBER] Umbrella sampling coordinate question Rajesh Raju (Tue Mar 08 2011 - 15:21:36 PST)
- [AMBER] question about the distance of pronton transfer and acetylation asakiayumikio.gmail.com (Tue Mar 08 2011 - 18:19:42 PST)
- [AMBER] about Nmod in amber11 juan zeng (Tue Mar 08 2011 - 23:25:11 PST)
- [AMBER] grid action command in ptraj mish (Wed Mar 09 2011 - 04:41:06 PST)
- [AMBER] Splitting the interaction energy Eliac Brown (Wed Mar 09 2011 - 06:26:58 PST)
- [AMBER] peek_ewald_inpcrd: SHOULD NOT BE HERE hari krishna (Wed Mar 09 2011 - 06:28:55 PST)
- [AMBER] irest Burcu Aykac Fas (Wed Mar 09 2011 - 06:38:38 PST)
- [AMBER] Partial Charges for Atom Types Naveen Samala (Wed Mar 09 2011 - 08:17:37 PST)
- [AMBER] Nab PB focusing error Bill Miller III (Wed Mar 09 2011 - 12:07:22 PST)
- [AMBER] Atom Types involved in Carbon monoxide and Cyanide bonds Naveen Samala (Wed Mar 09 2011 - 12:45:39 PST)
- [AMBER] the charge of NPRO in FF03 is equal to 0.9. zhihong ke (Wed Mar 09 2011 - 12:46:40 PST)
- [AMBER] Can we relax protein and ligand separately? kurisaki.ncube.human.nagoya-u.ac.jp (Wed Mar 09 2011 - 17:34:38 PST)
- [AMBER] Creating distaint restaint in Amber Vivien Landre (Wed Mar 09 2011 - 19:40:37 PST)
- [AMBER] interaction energy Aust, Susanne (Thu Mar 10 2011 - 00:34:28 PST)
- [AMBER] Specially For You ros (Thu Mar 10 2011 - 05:55:29 PST)
- [AMBER] Ptraj analyze crankshaft Mariano Rech (Thu Mar 10 2011 - 08:12:25 PST)
- [AMBER] angle in h-bond analysis mirage . (Fri Mar 11 2011 - 06:10:20 PST)
- [AMBER] Query regarding mmpbsa output file Hirdesh Kumar (Fri Mar 11 2011 - 06:24:33 PST)
- [AMBER] How to save a restart file Rahul Banerjee (Fri Mar 11 2011 - 08:51:50 PST)
- [AMBER] Nitu Bansal wants to chat Nitu Bansal (Fri Mar 11 2011 - 09:17:44 PST)
- [AMBER] how to run PIMD Sangita Kachhap (Fri Mar 11 2011 - 09:29:20 PST)
- [AMBER] the output of REMD simulations zhihong ke (Fri Mar 11 2011 - 09:35:00 PST)
- [AMBER] free energy profile for water slab Martina Roeselova (Fri Mar 11 2011 - 10:24:04 PST)
- [AMBER] Amber Training Workshop Announcement - Barcelona, Spain. 3-6 May 2011 Ross Walker (Fri Mar 11 2011 - 10:24:53 PST)
- [AMBER] AmberTools 1.4 possible bug for secstruct (test case attached) Tru Huynh (Fri Mar 11 2011 - 16:30:57 PST)
- [AMBER] docking evaluation using amber erik zuiderweg (Fri Mar 11 2011 - 17:33:00 PST)
- [AMBER] rdf plot subrata paul (Fri Mar 11 2011 - 19:54:29 PST)
- [AMBER] Amber archive mailing list is not working Hirdesh Kumar (Fri Mar 11 2011 - 22:50:55 PST)
- [AMBER] Energy Decomposition using mmpbsa script Eliac Brown (Sat Mar 12 2011 - 05:05:20 PST)
- [AMBER] Bad magic number ? Hector A. Baldoni (Sat Mar 12 2011 - 06:41:19 PST)
- [AMBER] GB parameters for Octane Eliac Brown (Sat Mar 12 2011 - 10:10:49 PST)
- [AMBER] questions about the input file of MD process asakiayumikio.gmail.com (Sun Mar 13 2011 - 00:45:44 PST)
- [AMBER] strip command usage in ptraj asakiayumikio.gmail.com (Sun Mar 13 2011 - 08:14:46 PDT)
- [AMBER] error in creating prmtop and inpcrd files Chris Bryant (Sun Mar 13 2011 - 10:48:56 PDT)
- [AMBER] amber11 Installation Test Failures David Cantu (Sun Mar 13 2011 - 18:11:59 PDT)
- [AMBER] how to calculate the B-factor of crystal pdb asakiayumikio.gmail.com (Sun Mar 13 2011 - 23:58:43 PDT)
- [AMBER] Query regarding mmpbsa run Hirdesh Kumar (Mon Mar 14 2011 - 03:59:38 PDT)
- [AMBER] how to obtain 4x4x1.1nm water; how to add polarizable models gromacs (Mon Mar 14 2011 - 05:44:42 PDT)
- [AMBER] Important Notice Re Sleap (especially with Glycam) Lachele Foley (Lists) (Mon Mar 14 2011 - 07:27:12 PDT)
- [AMBER] Regarding: Adding New Multi-atom Residue (Ligand) including partial charges Naveen Samala (Mon Mar 14 2011 - 11:30:32 PDT)
- [AMBER] MD- the enzyme bouncing Mahmoud Soliman (Mon Mar 14 2011 - 13:44:11 PDT)
- [AMBER] MD- the enzyme bouncing Mahmoud Soliman (Mon Mar 14 2011 - 13:44:41 PDT)
- [AMBER] mm_pbsa input for energy decomposition Lihua Wang (Mon Mar 14 2011 - 16:23:06 PDT)
- [AMBER] Compatibility Question Azat Mukhametov (Mon Mar 14 2011 - 17:57:09 PDT)
- [AMBER] Calculation with CUTCAP Roman Osman (Mon Mar 14 2011 - 20:20:43 PDT)
- [AMBER] how to choose the biasing potential based on the coarse free energy curve Ye MEI (Mon Mar 14 2011 - 21:21:12 PDT)
- [AMBER] amber11 intel mpi compile on altix 450 problem Lisa Perez (Mon Mar 14 2011 - 22:09:01 PDT)
- [AMBER] no answer so far - free energy profile for water slab Martina Roeselova (Tue Mar 15 2011 - 02:20:09 PDT)
- Re: [AMBER] how to choose the biasing potential based on the coarsefree energy curve Ye MEI (Tue Mar 15 2011 - 06:41:53 PDT)
- [AMBER] Explicit and implicit n-octanol solvent Eliac Brown (Tue Mar 15 2011 - 07:03:47 PDT)
- [AMBER] How to calculate water density around the certain residue or ligand mish (Tue Mar 15 2011 - 07:47:54 PDT)
- [AMBER] Add residue copied from other unit Vlastimil Zíma (Tue Mar 15 2011 - 08:24:14 PDT)
- [AMBER] AMBER 10 serial compile problem Dmitry Osolodkin (Tue Mar 15 2011 - 09:35:37 PDT)
- [AMBER] Missing Parameters Melanie (Tue Mar 15 2011 - 10:29:32 PDT)
- [AMBER] Assertion failed: nat < 5000, file makeDIST_RST Andre Serobian (Tue Mar 15 2011 - 13:20:47 PDT)
- [AMBER] AMBER Workshop in Shanghai, China, August 22-26 2011 Andreas Goetz (Tue Mar 15 2011 - 13:29:25 PDT)
- [AMBER] free energy calculation with TI Dian Jiao (Tue Mar 15 2011 - 13:55:04 PDT)
- [AMBER] how to run amber on mutli-gpu/muti-nodes Haipeng Wei (Tue Mar 15 2011 - 15:08:40 PDT)
- Re: [AMBER] how to choose the biasing potential based on thecoarsefree energy curve Ye MEI (Tue Mar 15 2011 - 20:28:05 PDT)
- [AMBER] NCSU David Cantu (Tue Mar 15 2011 - 20:44:00 PDT)
- [AMBER] PB Bomb in pb_aaradi ? Marek Maly (Tue Mar 15 2011 - 20:49:14 PDT)
- [AMBER] NVT Vs NPT Mahmoud Soliman (Wed Mar 16 2011 - 00:31:07 PDT)
- [AMBER] stacking energy calculation hari krishna (Wed Mar 16 2011 - 03:06:36 PDT)
- [AMBER] distance cutoff of closest command Sangita Kachhap (Wed Mar 16 2011 - 03:07:36 PDT)
- [AMBER] Reimaging Problem chandan patel (Wed Mar 16 2011 - 03:43:39 PDT)
- [AMBER] using thermodynamic integration, how to deal with absolute pka and conformation change Junjian Miao (Wed Mar 16 2011 - 05:58:58 PDT)
- [AMBER] Restraints on equilibration of solvated complexes George Tzotzos (Wed Mar 16 2011 - 07:37:17 PDT)
- [AMBER] Problem with link atom in QM/MM Wook Lee (Wed Mar 16 2011 - 08:01:31 PDT)
- [AMBER] Thermodynamic Integration Ignacio J. General (Wed Mar 16 2011 - 14:22:07 PDT)
- [AMBER] Thermostat Diego Javier Alonso de Armiño (Wed Mar 16 2011 - 19:50:05 PDT)
- [AMBER] parameters for metal site Jorgen Simonsen (Thu Mar 17 2011 - 02:24:16 PDT)
- [AMBER] MMPBSA energy contribution John S (Thu Mar 17 2011 - 08:05:12 PDT)
- [AMBER] Segmentation fault MASLYK, MACIEJ MARCIN (Wed Mar 16 2011 - 08:50:36 PDT)
- [AMBER] error installing AmberTools-1.2 in ubuntu 10.10 Vijay Manickam Achari (Thu Mar 17 2011 - 12:24:46 PDT)
- Re: [AMBER] Ptraj: Hbond and Bfactor analyses Kamali Sripathi (Thu Mar 17 2011 - 18:49:21 PDT)
- [AMBER] Using Intel compilers on AMD CPU Bongkeun Kim (Thu Mar 17 2011 - 20:10:48 PDT)
- [AMBER] changing X Y Z orientation Vijay Manickam Achari (Fri Mar 18 2011 - 03:47:21 PDT)
- [AMBER] problem with gas-phase MD simulation in Amber8. marta wiśniewska. (Fri Mar 18 2011 - 04:37:09 PDT)
- [AMBER] Amber11 on osx using port and gcc4.5 Joachim Reichelt (Fri Mar 18 2011 - 05:42:58 PDT)
- [AMBER] trouble with mmpbsa.py Chris Chris (Fri Mar 18 2011 - 09:44:08 PDT)
- [AMBER] RMSD Calculation abc def (Fri Mar 18 2011 - 09:47:41 PDT)
- [AMBER] Is rst file the last frame of output crd file? Bingwu Yu (Fri Mar 18 2011 - 10:07:04 PDT)
- [AMBER] Dihedral angles does not match VMD vs ptraj Bingwu Yu (Fri Mar 18 2011 - 13:30:42 PDT)
- [AMBER] convert the atomic b factor to residual b factor zhihong ke (Fri Mar 18 2011 - 14:27:45 PDT)
- [AMBER] TI minimizations cannot be performed with > 2 CPUs Dian Jiao (Fri Mar 18 2011 - 22:43:29 PDT)
- [AMBER] changing maximum number of frames for mmpbsa.py Chris Chris (Sat Mar 19 2011 - 09:27:03 PDT)
- [AMBER] AmberTools and GROMACS Francesco Oteri (Sat Mar 19 2011 - 11:31:04 PDT)
- [AMBER] reference for per-residue decomposition using TI Calculation g t (Sat Mar 19 2011 - 11:49:00 PDT)
- [AMBER] Differences in the periodic box dimensions Vijay Manickam Achari (Sat Mar 19 2011 - 14:38:25 PDT)
- [AMBER] MMPBSA question Eliac Brown (Sat Mar 19 2011 - 16:35:42 PDT)
- [AMBER] symmetry corrected RMSD calculation Pooja Khurana (Sat Mar 19 2011 - 19:38:21 PDT)
- [AMBER] AmberTools 1.4 make test Error David Cantu (Sun Mar 20 2011 - 01:39:50 PDT)
- [AMBER] Amber11 make test FAILURE and ERROR David Cantu (Sun Mar 20 2011 - 01:45:34 PDT)
- [AMBER] how to calculate scattering trajectory Wen Xu (Sun Mar 20 2011 - 12:51:01 PDT)
- [AMBER] charmmgen issues Francesco Pietra (Mon Mar 21 2011 - 04:04:03 PDT)
- [AMBER] MM-PBSA Error N.R. Jena (Mon Mar 21 2011 - 04:25:31 PDT)
- [AMBER] protein charge Ouaray Z. (Mon Mar 21 2011 - 06:52:23 PDT)
- [AMBER] probleme with "reference" using ptraj Muriel Jourdan (Mon Mar 21 2011 - 07:28:09 PDT)
- [AMBER] can I calculate binding energy with some restraints Mahmoud Soliman (Mon Mar 21 2011 - 08:06:17 PDT)
- [AMBER] MM/PBSA (Problem in snapshot generation) mish (Mon Mar 21 2011 - 10:00:37 PDT)
- [AMBER] nmode memory issue amit dong (Mon Mar 21 2011 - 10:01:05 PDT)
- [AMBER] calculation of population of each conformers Bingwu Yu (Mon Mar 21 2011 - 14:45:22 PDT)
- [AMBER] mmpbsa.pl energy decompistion stopped Eliac Brown (Mon Mar 21 2011 - 16:41:36 PDT)
- [AMBER] Parallel amber11 Installation FAIL David Cantu (Mon Mar 21 2011 - 16:49:23 PDT)
- [AMBER] Flags of secstruct Alessio Atzori (Tue Mar 22 2011 - 08:14:11 PDT)
- [AMBER] Ptraj crashes and Hbond analysis Kamali Sripathi (Tue Mar 22 2011 - 09:43:37 PDT)
- [AMBER] solvation free energy Jorgen Simonsen (Tue Mar 22 2011 - 11:08:57 PDT)
- [AMBER] average structure pdb file looks wrong Bingwu Yu (Tue Mar 22 2011 - 13:39:03 PDT)
- [AMBER] Doubts in MM-PBSA vani panguluri (Tue Mar 22 2011 - 14:52:00 PDT)
- [AMBER] Residuegen Usage Seungyeul Yoo (Tue Mar 22 2011 - 15:26:03 PDT)
- [AMBER] compiling AmberTools1.4 with -cuda flag Robert Wohlhueter (Tue Mar 22 2011 - 15:46:56 PDT)
- [AMBER] how to print out frames from conflib and lmod_traj arrays in NAB Sidney Elmer (Tue Mar 22 2011 - 18:10:43 PDT)
- [AMBER] Nmode error of MMPBSA.py 陳昭同 (Wed Mar 23 2011 - 02:30:36 PDT)
- [AMBER] Atom name convention/conversion in antechamber thomas.fox.boehringer-ingelheim.com (Wed Mar 23 2011 - 03:47:26 PDT)
- [AMBER] Perl Vs Python in MMPBSA calculations in Amber 10 Mahmoud Soliman (Wed Mar 23 2011 - 06:52:04 PDT)
- [AMBER] scientific question on decomposition analysis in pbsa calculation Mahmoud Soliman (Wed Mar 23 2011 - 07:20:37 PDT)
- [AMBER] tleap strange behavior Ignacio J. General (Wed Mar 23 2011 - 08:45:29 PDT)
- [AMBER] number of frames read in mmpbsa.py Chris Chris (Wed Mar 23 2011 - 09:44:41 PDT)
- [AMBER] error on atom parameters John S (Wed Mar 23 2011 - 11:07:47 PDT)
- [AMBER] how to minimize a protein-ligand system with the protein constrained I.Haldoupis (Wed Mar 23 2011 - 13:09:13 PDT)
- [AMBER] odd output from rms measurement Chris Chris (Wed Mar 23 2011 - 14:55:44 PDT)
- [AMBER] PMF calculations in Amber 10 Mahmoud Soliman (Wed Mar 23 2011 - 16:17:28 PDT)
- [AMBER] pmemd and generalized NMR torsional restraints in AMBER10 Ilyas Yildirim (Wed Mar 23 2011 - 16:48:27 PDT)
- [AMBER] extract vdw energy Yuan Ding (Wed Mar 23 2011 - 17:41:33 PDT)
- [AMBER] unsubscribe Jack Lei (Wed Mar 23 2011 - 22:29:20 PDT)
- [AMBER] Amber 姜笑楠 (Wed Mar 23 2011 - 23:50:08 PDT)
- [AMBER] How do I plot the angle population distribution Bingwu Yu (Thu Mar 24 2011 - 06:42:36 PDT)
- [AMBER] ptraj problems Christoph Malisi (Thu Mar 24 2011 - 07:05:42 PDT)
- [AMBER] ptraj: box information for truncated octahedron thomas.fox.boehringer-ingelheim.com (Thu Mar 24 2011 - 10:10:35 PDT)
- [AMBER] usage of 2drms John S (Thu Mar 24 2011 - 10:12:36 PDT)
- [AMBER] Sander was terminating in the midddle vani panguluri (Thu Mar 24 2011 - 10:47:10 PDT)
- [AMBER] deleting protein atoms from prmtop topology files using rdparm g t (Thu Mar 24 2011 - 12:01:36 PDT)
- [AMBER] positive GBtot value Hoshin Kim (Thu Mar 24 2011 - 18:02:30 PDT)
- [AMBER] Error with MM-PBSA perl file for pairwise residue decomposition Monika Sharma (Thu Mar 24 2011 - 20:09:16 PDT)
- [AMBER] regrding the anal working dhilip kumar ramalingam (Thu Mar 24 2011 - 22:28:32 PDT)
- [AMBER] Help: Clustering trajectories based on dihedral angle? Rajeswari A. (Fri Mar 25 2011 - 01:38:00 PDT)
- [AMBER] compiling with cuda Jacopo Sgrignani (Fri Mar 25 2011 - 01:47:49 PDT)
- [AMBER] regarding anal function dhilip kumar ramalingam (Fri Mar 25 2011 - 04:08:02 PDT)
- [AMBER] Error: vlimit exceeded for step pankhuri arora (Fri Mar 25 2011 - 04:38:11 PDT)
- [AMBER] Amber Installation error Hirdesh Kumar (Fri Mar 25 2011 - 05:22:25 PDT)
- [AMBER] CUDA Installation URL ros (Fri Mar 25 2011 - 09:40:22 PDT)
- [AMBER] Neutral Lysine (LYN) not calculated in MM_PBSA Rubben Torella (Fri Mar 25 2011 - 10:34:17 PDT)
- [AMBER] pmemd and nmr restraint marc gueroult (Fri Mar 25 2011 - 10:53:21 PDT)
- [AMBER] solvatecap Lucio Ferella (Fri Mar 25 2011 - 11:07:51 PDT)
- [AMBER] nmode calculations amit dong (Fri Mar 25 2011 - 11:12:24 PDT)
- [AMBER] Spatial distribution function Ganesh Kamath (Fri Mar 25 2011 - 11:19:24 PDT)
- [AMBER] how critical charge neutralization of a system Mahmoud Soliman (Fri Mar 25 2011 - 14:02:35 PDT)
- [AMBER] AMD Opteron system - compiling pmemd with intel or gfortran? Ilyas Yildirim (Fri Mar 25 2011 - 13:54:22 PDT)
- [AMBER] QM/MM error in amber 10 Mahmoud Soliman (Fri Mar 25 2011 - 15:21:16 PDT)
- [AMBER] AmberTools1.4 question markus metz (Sat Mar 26 2011 - 10:40:56 PDT)
- [AMBER] ff10 Jorgen Simonsen (Sat Mar 26 2011 - 11:39:44 PDT)
- [AMBER] GBSA calculations using mm_pbsa.pl manikanthan bhavaraju (Sat Mar 26 2011 - 17:59:38 PDT)
- [AMBER] Keep getting LINMIN error. Not sure how to progress. I.Haldoupis (Mon Mar 28 2011 - 05:27:00 PDT)
- [AMBER] enzyme MD trajectory looks funny Mahmoud Soliman (Mon Mar 28 2011 - 06:10:38 PDT)
- [AMBER] water box deforms during MD Mahmoud Soliman (Mon Mar 28 2011 - 07:02:20 PDT)
- [AMBER] RESP: optimized charges not reasonable Ignacio Faustino Plo (Mon Mar 28 2011 - 09:59:52 PDT)
- [AMBER] problem with peptide simulations Hashem Taha (Mon Mar 28 2011 - 12:05:55 PDT)
- Re: [AMBER] Possibly wrong dihedrals assignment in the frcmod.parmbsc0 file Hopkins, Robert (Mon Mar 28 2011 - 12:16:33 PDT)
- [AMBER] ptraj minimum rmsd in presence of homotopic atoms Alexander Metz (Tue Mar 29 2011 - 02:21:21 PDT)
- [AMBER] script problem Mahmoud Soliman (Tue Mar 29 2011 - 14:16:15 PDT)
- [AMBER] nmropt modes for GPU accelerated pmemd 11 Andre Serobian (Wed Mar 30 2011 - 00:24:04 PDT)
- [AMBER] positional restraint on crystal water Sangita Kachhap (Wed Mar 30 2011 - 00:30:16 PDT)
- [AMBER] clustering MD results Jack Lee (Wed Mar 30 2011 - 01:34:06 PDT)
- [AMBER] Exchange Acceptance Ratio Alessio Atzori (Wed Mar 30 2011 - 03:57:36 PDT)
- [AMBER] Loading .mol2 file in sleap r smith (Wed Mar 30 2011 - 06:12:15 PDT)
- [AMBER] The validity of a per-residue decomposition in amber g t (Wed Mar 30 2011 - 06:36:33 PDT)
- [AMBER] Atom distribution in PMEMD.cuda Francesco Oteri (Wed Mar 30 2011 - 07:02:31 PDT)
- [AMBER] Implicit simulation Elisa Frezza (Wed Mar 30 2011 - 10:03:30 PDT)
- [AMBER] new residue with amoeba Daniel Chipman (Wed Mar 30 2011 - 12:54:11 PDT)
- [AMBER] segmentation fault when using mmpbsa.py Chris Chris (Wed Mar 30 2011 - 15:03:46 PDT)
- [AMBER] Add Residue at N-terminal setyanto md (Thu Mar 31 2011 - 06:57:17 PDT)
- [AMBER] PMEMD on the Open Science Grid Steven Cox (Thu Mar 31 2011 - 07:19:42 PDT)
- [AMBER] Inconsistencies between reported lines and executed lines in source code Albert Lee (Thu Mar 31 2011 - 11:12:23 PDT)
- [AMBER] parameter for CNTs Jagur Lambix (Thu Mar 31 2011 - 16:02:14 PDT)
- Last message date: Thu Mar 31 2011 - 17:00:02 PDT
- Archived on: Wed Nov 20 2024 - 05:54:06 PST
