-- Check Format for pdb,mpdb or ac File -- -- Status: pass -- -- Check Unusual Elements -- -- Status: pass -- -- Check Open Valences -- -- Check Geometry -- -- For those bonded -- -- For those unbonded --  Warning: although no bond formed between ATOM 1 N1A and ATOM 2 C2A, the distance 1.34 is very small Warning: although no bond formed between ATOM 2 C2A and ATOM 81 H2A, the distance 1.10 is very small Warning: although no bond formed between ATOM 4 C4A and ATOM 5 C5A, the distance 1.40 is very small Warning: although no bond formed between ATOM 5 C5A and ATOM 6 C6A, the distance 1.40 is very small Warning: although no bond formed between ATOM 7 N6A and ATOM 56 H62A, the distance 1.00 is very small Warning: although no bond formed between ATOM 7 N6A and ATOM 57 H61A, the distance 1.00 is very small Warning: although no bond formed between ATOM 9 C8A and ATOM 71 H8A, the distance 1.10 is very small Warning: although no bond formed between ATOM 11 C1B and ATOM 84 H1B, the distance 1.10 is very small Warning: although no bond formed between ATOM 12 C2B and ATOM 80 H2B, the distance 1.10 is very small Warning: although no bond formed between ATOM 13 O2B and ATOM 52 HO2A, the distance 1.00 is very small Warning: although no bond formed between ATOM 14 C3B and ATOM 77 H3B, the distance 1.10 is very small Warning: although no bond formed between ATOM 20 C4B and ATOM 76 H4B, the distance 1.10 is very small Warning: although no bond formed between ATOM 22 C5B and ATOM 58 H52A, the distance 1.10 is very small Warning: although no bond formed between ATOM 22 C5B and ATOM 59 H51A, the distance 1.10 is very small Warning: although no bond formed between ATOM 24 P1A and ATOM 26 O2A, the distance 1.65 is very small Warning: although no bond formed between ATOM 28 P2A and ATOM 30 O5A, the distance 1.66 is very small Warning: although no bond formed between ATOM 33 CCP and ATOM 66 H122, the distance 1.10 is very small Warning: although no bond formed between ATOM 33 CCP and ATOM 67 H121, the distance 1.10 is very small Warning: although no bond formed between ATOM 34 CDP and ATOM 63 H133, the distance 1.10 is very small Warning: although no bond formed between ATOM 34 CDP and ATOM 64 H132, the distance 1.10 is very small Warning: although no bond formed between ATOM 34 CDP and ATOM 65 H131, the distance 1.10 is very small Warning: although no bond formed between ATOM 35 CEP and ATOM 60 H143, the distance 1.10 is very small Warning: although no bond formed between ATOM 35 CEP and ATOM 61 H142, the distance 1.10 is very small Warning: although no bond formed between ATOM 35 CEP and ATOM 62 H141, the distance 1.10 is very small Warning: although no bond formed between ATOM 36 CAP and ATOM 85 H10, the distance 1.10 is very small Warning: although no bond formed between ATOM 37 OAP and ATOM 68 HO1, the distance 1.00 is very small Warning: although no bond formed between ATOM 38 C9P and ATOM 39 O9P, the distance 1.24 is very small Warning: although no bond formed between ATOM 40 N8P and ATOM 69 HN8, the distance 1.00 is very small Warning: although no bond formed between ATOM 41 C7P and ATOM 72 H72, the distance 1.10 is very small Warning: although no bond formed between ATOM 41 C7P and ATOM 73 H71, the distance 1.10 is very small Warning: although no bond formed between ATOM 42 C6P and ATOM 74 H62, the distance 1.10 is very small Warning: although no bond formed between ATOM 42 C6P and ATOM 75 H61, the distance 1.10 is very small Warning: although no bond formed between ATOM 43 C5P and ATOM 44 O5P, the distance 1.24 is very small Warning: although no bond formed between ATOM 45 N4P and ATOM 70 HN4, the distance 1.00 is very small Warning: although no bond formed between ATOM 46 C3P and ATOM 78 H32, the distance 1.10 is very small Warning: although no bond formed between ATOM 46 C3P and ATOM 79 H31, the distance 1.10 is very small Warning: although no bond formed between ATOM 47 C2P and ATOM 82 H22, the distance 1.10 is very small Warning: although no bond formed between ATOM 47 C2P and ATOM 83 H21, the distance 1.10 is very small Warning: although no bond formed between ATOM 49 C and ATOM 50 O, the distance 1.25 is very small Warning: although no bond formed between ATOM 51 CH3 and ATOM 53 HH33, the distance 1.10 is very small Warning: although no bond formed between ATOM 51 CH3 and ATOM 54 HH32, the distance 1.10 is very small Warning: although no bond formed between ATOM 51 CH3 and ATOM 55 HH31, the distance 1.10 is very smallError: There are more than one unit, antechamber can only handle one unit molecule, exit  If you think your input is a single molecule, the geometry may be bad and the connectivity must be wrong.  Please convert your molecule to a mol2 file with antechamber using "-j 5 -at sybyl" flags  And then check your molecue with visual program and manually add new bonds or delete unwanted bonds  -- Status: pass -- -- check weird bonds -- -- Status: pass -- -- Check if the input is only one unit --