Dear Amber Users,
I am simulating a protein with Co2+ at the active site. I am
stuck with the simulations because of unavailability of Co2+
parameters. It would be of great help if someone can suggest
me how can I derive the parameters for the same.
As an other option, as has been reported that the proteins
conformations does not change drastically upon binding to Fe2+
ions. Can we use the FE parameters from the parm99 parameter
file instead of parameterizing for Co2+.
Thanks a lot in advance for any suggestions.
Best Regards,
Moitrayee Bhattacharyya
MBU, IISc,
Bangalore-560012
India
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Received on Mon Feb 14 2011 - 22:30:02 PST
