Dear Jason,
It is so kind of you to tell me.
Yes. I installed
sudo apt-get install xorg-dev
and i installed again.
The error is also from leap, so maybe i need to ignore xleap.
yacc: Command not found
I will have another try.
Thanks
At 2011-02-15 08:42:54£¬"Jason Swails" <jason.swails.gmail.com> wrote:
>2011/2/14 gromacs <ptf1242.163.com>
>
>> The version i install is AMBER 9, not AMBER 10 or AMBER 11. It seems AMBER
>> 9 not need AmberTool, Do i need to still instll AmberTool?
>>
>
>At this point Amber and AmberTools were released as the same package. It
>wasn't until Amber10 that they were separate distributions (and not until
>Amber 11 that they were released with different root directories). You do
>not need to install any later version of AmberTools in order to get Amber 9
>to work.
>
>
>>
>> And If i install AMBER 9, are there still 2 bugfix.all files that will have
>> to apply?
>>
>
>No, just the 1 bugfix.all
>
>
>>
>> I am using Ubuntu, for install AMBER 9 xorg-dev package also need??
>>
>
>For xleap, yes. You can specifically ask for no xleap (with the flag -noX11
>maybe, or something related), which should avoid this error. If you want to
>build xleap, then you will need the xorg-dev package:
>
>sudo apt-get install xorg-dev
>
>
>>
>> I download l_fcompxe_ia32_2011.2.137.tgz, and it is the latest version. But
>> after i finished, i type 'which ifort', it did not give any response.
>>
>
>Most likely you have to source the appropriate ifortvars.sh variable. For
>my machine, ifort is located in
>/opt/intel/Compiler/11.1/069/bin/ifortvars.sh . I load the proper
>environment variables by placing the command
>
>source /opt/intel/Compiler/11.1/069/bin/ifortvars.sh intel64
>
>(or ia32 for 32-bit OSes).
>
>After sourcing this file (if you just place it in the .bashrc you will
>either have to source the .bashrc again or start a new shell to see its
>effects), type "which ifort" and see if it becomes visible.
>
>Good luck,
>Jason
>
>
>>
>>
>> Thanks
>>
>>
>>
>> At 2011-02-14 20:41:27£¬"Jason Swails" <jason.swails.gmail.com> wrote:
>>
>> >2011/2/14 gromacs <ptf1242.163.com>
>> >
>> >> Hi,
>> >>
>> >> WcActCB.c:1450: error: expected declaration specifiers before ¡®Widget¡¯
>> >> WcActCB.c:1450: error: expected declaration specifiers before ¡®XEvent¡¯
>> >> WcActCB.c:1450: error: expected declaration specifiers before ¡®Cardinal¡¯
>> >> WcActCB.c: In function ¡®WcDynamicCallbackACT¡¯:
>> >> WcActCB.c:1452: error: expected declaration specifiers before ¡®Widget¡¯
>> >> WcActCB.c:1452: error: expected declaration specifiers before ¡®XEvent¡¯
>> >> WcActCB.c:1452: error: expected declaration specifiers before ¡®Cardinal¡¯
>> >> WcActCB.c: In function ¡®WcRegisterWcActions¡¯:
>> >> WcActCB.c:1461: error: expected declaration specifiers before
>> >> ¡®XtAppContext¡¯
>> >> WcActCB.c:1463: error: expected ¡®=¡¯, ¡®,¡¯, ¡®;¡¯, ¡®asm¡¯ or ¡®__attribute__¡¯
>> >> before ¡®WcActions¡¯
>> >> WcActCB.c:1463: error: ¡®WcActions¡¯ undeclared (first use in this
>> function)
>> >> WcActCB.c:1463: error: expected expression before ¡®]¡¯ token
>> >> WcActCB.c:1536: error: expected ¡®=¡¯, ¡®,¡¯, ¡®;¡¯, ¡®asm¡¯ or ¡®__attribute__¡¯
>> >> before ¡®already¡¯
>> >> WcActCB.c:1536: error: ¡®already¡¯ undeclared (first use in this function)
>> >> make[2]: *** [WcActCB.o] Error 1
>> >> make[2]: Leaving directory `/home/uqtpeng1/AMBER/amber9/src/leap/src/Wc'
>> >> make[1]: *** [install] Error 2
>> >> make[1]: Leaving directory `/home/uqtpeng1/AMBER/amber9/src/leap'
>> >> make: *** [serial] Error 2
>> >>
>> >> I have gfortran and i installed at different desktops. When 'sudo make
>> >> series', the error will come. WcCreate.h:,
>> >>
>> >
>> >Have you applied all bug fixes to your version of Amber and AmberTools
>> (note
>> >there will be 2 bugfix.all files that you will have to apply.
>> >
>> >
>> >>
>> >> How can i solve this problem. I also cannot find a ifort in Inter
>> website.
>> >> Even if i download the interfortran from that site, it is not easy to
>> >> install.
>> >>
>> >
>> >Make sure that you have all bug fixes applied and that you have the X
>> >developer package installed:
>> >
>> >On new Fedora OS's install the libXt-devel libXext-devel
>> >libX11-devel libICE-devel libSM-devel packages.
>> >On old Fedora OS's install the xorg-x11-devel package.
>> >On RedHat OS's install the XFree86-devel package.
>> >On Ubuntu OS's install the xorg-dev package.
>> >For the moment Amber will be configured not to build XLEaP.
>> >
>> >As far as installing the intel compiler suite; if you have obtained a
>> >license for it (academic or commercial or whatever), you get an installer
>> >package that you just have to launch and follow the on-screen prompts (at
>> >least for versions as recent as 11.1.069).
>> >
>> >Good luck!
>> >Jason
>> >
>> >>
>> >>
>> >> _______________________________________________
>> >> AMBER mailing list
>> >> AMBER.ambermd.org
>> >> http://lists.ambermd.org/mailman/listinfo/amber
>> >>
>> >
>> >
>> >
>> >--
>> >Jason M. Swails
>> >Quantum Theory Project,
>> >University of Florida
>> >Ph.D. Candidate
>> >352-392-4032
>> >_______________________________________________
>> >AMBER mailing list
>> >AMBER.ambermd.org
>> >http://lists.ambermd.org/mailman/listinfo/amber
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>>
>
>
>
>--
>Jason M. Swails
>Quantum Theory Project,
>University of Florida
>Ph.D. Candidate
>352-392-4032
>_______________________________________________
>AMBER mailing list
>AMBER.ambermd.org
>http://lists.ambermd.org/mailman/listinfo/amber
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Mon Feb 14 2011 - 17:30:02 PST
