Dear Amber Users,
I am having problems in running mm_pbsa on amber8. When I used the script mm_pbsa.pl to generate coordinates I had the following error message:
Can't exec "/opt/amber8/exe/make_crd_hg": No such file or directory at /opt/amber8/src/mm_pbsa/mm_pbsa_createcoords.pm line 51.
Open TO failed: No such file or directory
I have checked and the file make_crd_hg is there but somehow it is not found. I tried to clean and install mm_pbsa also and received the following errors:
for clean:
/bin/rm *.o _*.f make_crd_hg molsurf
/bin/rm: cannot remove `*.o': No such file or directory
/bin/rm: cannot remove `_*.f': No such file or directory
/bin/rm: cannot remove `make_crd_hg': No such file or directory
/bin/rm: cannot remove `molsurf': No such file or directory
make: [clean] Error 1 (ignored)
for install:
cpp -traditional -I/usr/local//include -P -I/opt/amber8/src/include -DMPI make_crd_hg.f > _make_crd_hg.f
ifort -c -w95 -mp1 -O0 -o make_crd_hg.o _make_crd_hg.f
/usr/local/bin/ifort: line 40: /opt/intel/fc/10.1.008/bin/ifortbin: No such file or directory
/usr/local/bin/ifort: line 40: /opt/intel/fc/10.1.008/bin/ifortbin: Success
make: *** [make_crd_hg.o] Error
I searched the Amber List Archive for this error but couldn't find it in this context... can any one help?
Kind regards,
Waqas.
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Received on Thu Feb 10 2011 - 04:30:03 PST
