I have chacked in restart file time is not written there.
> I meant to check the time stamp inside the restart file- the one that
> specifies the simulation time when the restart file was written.
> http://ambermd.org/formats.html#restart
>
> On Fri, Feb 4, 2011 at 11:21 AM, Sangita Kachhap <sangita.imtech.res.in> wrote:
>>
>> Thanks to reply
>>
>> I am using Amber11 and have all the restart files.
>> All the file dont have started at the same time:-
>>
>> [sangita.master1 REMD-ASP]$ head remd.mdout.001
>>
>> -------------------------------------------------------
>> Amber 11 SANDER 2010
>> -------------------------------------------------------
>>
>> | Run on 02/01/2011 at 10:19:19
>> [-O]verwriting output
>>
>> File Assignments:
>> | MDIN: remd.mdin.001
>> [sangita.master1 REMD-ASP]$ head remd.mdout.002
>>
>> -------------------------------------------------------
>> Amber 11 SANDER 2010
>> -------------------------------------------------------
>>
>> | Run on 02/01/2011 at 10:19:19
>> [-O]verwriting output
>>
>> File Assignments:
>> | MDIN: remd.mdin.002
>> [sangita.master1 REMD-ASP]$ head remd.mdout.003
>>
>> -------------------------------------------------------
>> Amber 11 SANDER 2010
>> -------------------------------------------------------
>>
>> | Run on 02/01/2011 at 10:19:19
>> [-O]verwriting output
>>
>> File Assignments:
>> | MDIN: remd.mdin.003
>> [sangita.master1 REMD-ASP]$ head remd.mdout.004
>>
>> -------------------------------------------------------
>> Amber 11 SANDER 2010
>> -------------------------------------------------------
>>
>> | Run on 02/01/2011 at 10:19:19
>> [-O]verwriting output
>>
>> File Assignments:
>> | MDIN: remd.mdin.004
>> [sangita.master1 REMD-ASP]$ head remd.mdout.005
>>
>> -------------------------------------------------------
>> Amber 11 SANDER 2010
>> -------------------------------------------------------
>>
>> | Run on 02/01/2011 at 10:20:08
>> [-O]verwriting output
>>
>> File Assignments:
>> | MDIN: remd.mdin.005
>> [sangita.master1 REMD-ASP]$ head remd.mdout.006
>>
>> -------------------------------------------------------
>> Amber 11 SANDER 2010
>> -------------------------------------------------------
>>
>> | Run on 02/01/2011 at 10:20:08
>> [-O]verwriting output
>>
>> File Assignments:
>> | MDIN: remd.mdin.006
>> [sangita.master1 REMD-ASP]$ head remd.mdout.007
>>
>> -------------------------------------------------------
>> Amber 11 SANDER 2010
>> -------------------------------------------------------
>>
>> | Run on 02/01/2011 at 10:20:08
>> [-O]verwriting output
>>
>> File Assignments:
>> | MDIN: remd.mdin.007
>> [sangita.master1 REMD-ASP]$ head remd.mdout.008
>>
>> -------------------------------------------------------
>> Amber 11 SANDER 2010
>> -------------------------------------------------------
>>
>> | Run on 02/01/2011 at 10:20:08
>> [-O]verwriting output
>>
>> File Assignments:
>> | MDIN: remd.mdin.008
>>
>>
>>
>>
>>> please tell us more, such as Amber version, and if you have all restart
>>> files.
>>> use the "head" command to check and make sure all files have the same
>>> simulation time and there is a file for each temperature.
>>>
>>> On Fri, Feb 4, 2011 at 10:21 AM, Sangita Kachhap <sangita.imtech.res.in>
>>> wrote:
>>>> Hello all
>>>> I am running REMD (production run) it has stooped running due to cluster
>>>> error.
>>>> I want to restart it.
>>>> As Amber manual there is option if use -A in command line it wiil help in
>>>> restarting
>>>> REMD simulation. I go through the amber mailing list there also I didnt get
>>>> any
>>>> idea.
>>>>
>>>> can anyone sugesst to how restart REMD?
>>>>
>>>> With regard
>>>> Sangita Kachhap
>>>> JRF
>>>> BIC,IMTECH
>>>> CHANDIGARH
>>>>
>>>>
>>>> _______________________________________________
>>>> AMBER mailing list
>>>> AMBER.ambermd.org
>>>> http://lists.ambermd.org/mailman/listinfo/amber
>>>>
>>>
>>> _______________________________________________
>>> AMBER mailing list
>>> AMBER.ambermd.org
>>> http://lists.ambermd.org/mailman/listinfo/amber
>>>
>>
>>
>> Sangita Kachhap
>> JRF
>> BIC,IMTECH
>> CHANDIGARH
>>
>>
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
Sangita Kachhap
JRF
BIC,IMTECH
CHANDIGARH
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Fri Feb 04 2011 - 09:00:05 PST
