> How to align it square to the axes, is that in xleap .
Look at it in xleap and see if it's standing on a corner. If so, see
if you can select all and rotate.
Maybe VMD loading prmtop/prmcrd will show the box so you can see if
it hugs the system.
> In packmol I used center of mass to keep my polymer at center of the box.
I doubt that would be a problem, though I haven't used packmol.
Bill
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Received on Fri Jan 28 2011 - 13:00:03 PST
