What is it that you want to learn that you do not already know? That will
decide what type of simulation is best.
On Jan 27, 2011 9:27 AM, "Sangita Kachhap" <sangita.imtech.res.in> wrote:
Hello all
I have a protein exist in two conformation inactive and active.To become
active
from inactive here is a N-terminus helix undergos ~90degree rotation.
Is it possible to achive this by MD simulation?
If possible then which technique should apply here?
Since I ran very short 1.2ns SGLD and I didnt get any conformational
changes.
Should I increase the SGLD run?
Sangita Kachhap
JRF
BIC,IMTECH
CHANDIGARH
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu Jan 27 2011 - 07:30:04 PST
