Hi Shesh,
I'm not sure if you just want to find a computational way of finding
these, but these can easily be calculated without AMBER.
You can find a tool at
http://www.idtdna.com/analyzer/Applications/OligoAnalyzer/ where you
can input your concentration and sequence, and it will give you the
melting temperature.
There are papers on the subject, which you can find with google
scholar, scifinder, etc.
Hope this helps,
-Dave
On 1/16/11, Shesh Nath <sheshnath65.gmail.com> wrote:
> Dear Sir
> I have heated 10-mer DNA .I want to determine the melting point of
> DNA. For this I want to plot a graph between No.of base pairs and
> Temperature.
> How can I plot this graph using Amber10.
> please help me.
>
>
> --
> SHESH NATH
> RESEARCH SCHOLAR,
> THEORETICAL CONDENSED MATTER PHYSICS,
> DEPARTMENT OF PHYSICS,
> BANARAS HINDU UNIVERSITY,
> VARANASI-221005
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>
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Received on Mon Jan 17 2011 - 06:00:03 PST
