Hello,
When compile Amber 10 on an IBM Power7 computer, it failed with:
1501-510 Compilation successful for file _ncsu-pmd-hooks.f.
touch netcdf.o
/opt/apps/ibm/xlf/13.1/exe/cpp
-I/users/yf4/UTILS/OPENMPI/1.4.3/include -P -DCLINK_PLAIN -DXLF90
-DBINTRAJ -DMPI ncsu-umbrella.f > _ncsu-umbrella.f
/users/yf4/UTILS/OPENMPI/1.4.3/bin/mpif90 -c -qfixed -O3 -qmaxmem=-1
-qarch=auto -qtune=auto -qfree=f90 -o ncsu-umbrella.o
_ncsu-umbrella.f
"_ncsu-umbrella.f", line 63.5: 1514-219 (S) Unable to access module
symbol file for module netcdf. Check path and file permissions of
file. Use association not done for this module.
1501-511 Compilation failed for file _ncsu-umbrella.f.
make: *** [ncsu-umbrella.o] Error 1
The config.h file is shown below:
#==============================================================================
# AMBER Makefile configuration for compiler/architecture: xlf90_suse
# Generated via command: ./configure_amber -openmpi xlf90_suse
#
# Configuration script written mainly by Joe Krahn, Scott Brozell, and
# Dave Case, with contributions from lots of people.
#==============================================================================
#------------------------------------------------------------------------------
# AMBERBUILDFLAGS provides a hook into the build process for installers;
# for example, to build debug versions of the amber programs
# make -e AMBERBUILDFLAGS="-DDEBUG -g"
#------------------------------------------------------------------------------
AMBERBUILDFLAGS=
#------------------------------------------------------------------------------
# LOCALFLAGS is intended for program specific modifications to the
# Fortran build process and may be modified by the program's local makefile
#------------------------------------------------------------------------------
LOCALFLAGS=
#------------------------------------------------------------------------------
# Availability and method of delivery of math and optional libraries
#------------------------------------------------------------------------------
USE_BLASLIB=$(SOURCE_COMPILED)
USE_LAPACKLIB=$(SOURCE_COMPILED)
#------------------------------------------------------------------------------
# C compiler
#------------------------------------------------------------------------------
CC= xlc
CPLUSPLUS=xlC
CFLAGS= -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 $(AMBERBUILDFLAGS)
CPPFLAGS=-DCLINK_PLAIN -DBINTRAJ
-I/users/yf4/APPS/AMBER10/NETCDF/include $(AMBERBUILDFLAGS)
#------------------------------------------------------------------------------
# Fortran preprocessing and compiler.
# FPPFLAGS holds the main Fortran options, such as whether MPI is used.
#------------------------------------------------------------------------------
FPPFLAGS= -I/users/yf4/UTILS/OPENMPI/1.4.3/include -P -DCLINK_PLAIN
-DXLF90 -DBINTRAJ -DMPI $(AMBERBUILDFLAGS)
FPP= /opt/apps/ibm/xlf/13.1/exe/cpp $(FPPFLAGS)
FC= /users/yf4/UTILS/OPENMPI/1.4.3/bin/mpif90
FFLAGS= -qfixed $(LOCALFLAGS) $(AMBERBUILDFLAGS)
FOPTFLAGS= -qfixed -O3 -qmaxmem=-1 -qarch=auto -qtune=auto
$(LOCALFLAGS) $(AMBERBUILDFLAGS)
FREEFORMAT_FLAG= -qfree=f90
#------------------------------------------------------------------------------
# Loader:
#------------------------------------------------------------------------------
LOAD= /users/yf4/UTILS/OPENMPI/1.4.3/bin/mpif90 $(LOCALFLAGS)
$(AMBERBUILDFLAGS)
LOADCC= xlc $(LOCALFLAGS) $(AMBERBUILDFLAGS)
LOADLIB=
LM= -lm
XHOME= /usr/X11R6
XLIBS= -L/usr/X11R6/lib
#------------------------------------------------------------------------------
# Other stuff:
#------------------------------------------------------------------------------
.SUFFIXES: .f90
EMPTY=
AR=ar rvs $(EMPTY)
M4=m4
RANLIB=/bin/true
SFX=
NETCDF=/users/yf4/APPS/AMBER10/NETCDF
NETCDFLIB=/users/yf4/APPS/AMBER10/NETCDF/lib/libnetcdf.a
MODULEDIR=-I
testsanderDIVCON=test.sander.DIVCON
INCDIVCON=divcon
LIBDIVCON=../dcqtp/src/qmmm/libdivcon.a
# Location for executables, etc:
BINDIR=/users/yf4/APPS/AMBER10/AMBER10/amber10/bin
LIBDIR=/users/yf4/APPS/AMBER10/AMBER10/amber10/lib
INCDIR=/users/yf4/APPS/AMBER10/AMBER10/amber10/include
DATDIR=/users/yf4/APPS/AMBER10/AMBER10/amber10/dat
# default rules for Fortran and C compilation:
.f.o: $<
$(FPP) $< > _$<
$(FC) -c $(FFLAGS) -o $. _$<
.c.o:
$(CC) -c $(CFLAGS) $(CPPFLAGS) -o $. $<
The problem looks like the compilation failed to find NETCDF.
Any suggestion?
Sincerely,
Yubo
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Received on Thu Jan 13 2011 - 15:30:04 PST
