[AMBER] waters in interface between protein and dna / water mediated hydrogen bonds

From: leila karami <karami.leila1.gmail.com>
Date: Sat, 8 Jan 2011 15:20:17 +0330

Dear amber users

my system contains protein, dna and many waters.

I want to obtain the number of water which are in interface between protein
and dna.

I also want to know exact number which every water molecule has(for example
water : 110, 112, 245,....).

then, I want to obtain water mediated hydrogen bonds.

how to do that? with what tool?

any help will highly appreciated.

best regards
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Received on Sat Jan 08 2011 - 04:00:03 PST
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