[AMBER] How to clean dihedral angles plot?

From: Baptiste Legrand <bap.legrand.gmail.com>
Date: Fri, 07 Jan 2011 15:23:37 +0100

Dear all,

I'm following the tutorial B3 (section 6) to analyse the dihedral angles
of my molecule during a simulation. I'm not familiar with xmgrace to
reproduce the plot "dihedral angle versus frame number", can I have more
details on how to clean the -180 to + 180 jump with xmgrace? Thanks.

In the tutorial:
I won't go into details on how to do this here but suffice to say you
can do it in xmgrace with some code like:

dihedral cleanup was done using transformations: evaluate expression:
y = (y< -100) ? y=y+360 : y


Best wishes,
Baptiste


_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Fri Jan 07 2011 - 06:30:03 PST
Custom Search