Hello,
I am new to using Amber 11 and would like some help please applying bugfix #9 to Amber 11. I think I have successfully applied the AmberTools v1.4 bug fixes to the installation. No problems or reject files were created. I have also applied bugfix 1 - 8 to the Amber 11 installation without reject files.
The command used for applying the patches is generally
patch -p0 -N < /path/to/amber/bugfix.Number
The command is issued in the $AMBERHOME directory.
My issue is that bugfix 9 does not apply without failures. Is this normal to expect bugfix 9 to create hunk failures? I have counted 23 failures reported from the patch command. I have attempted to search through the mail archives and did not turn up much information on bugfix 9 problems.
This is an excerpt of the output from the patch command with bugfix 9
patching file src/pmemd/src/cuda/kCPNE.h
Hunk #2 FAILED at 57.
Hunk #3 FAILED at 242.
Hunk #4 FAILED at 368.
Hunk #5 FAILED at 433.
4 out of 5 hunks FAILED -- saving rejects to file src/pmemd/src/cuda/kCPNE.h.rej
Please let me know if additional information is required.
Thank you for your help.
Bill
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Received on Thu Jan 06 2011 - 13:30:03 PST
