Dear amber users
my system contains protein, dna and many waters.
I want to obtain the number of water which are in interface between protein
and dna.
I also want to know exact number which every water molecule has(for example
water : 110, 112, 245,....).
then, I want to obtain water mediated hydrogen bonds.
how to do that? with what tool?
any help will highly appreciated.
best regards
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Received on Thu Jan 06 2011 - 00:00:03 PST
