it is hard to tell without seeing the pdb file. but it is possible
that you may need an .frcmod file for prmtop and inpcrd files. this my
first guess. you may also consider to take quick look at the atom
types. if you can find a typo among types, it may also cause to this
problem.
regards
peker milas
On Tue, Jan 4, 2011 at 11:29 PM, Raman Parkesh <rparkesh.gmail.com> wrote:
> What error message you are getting? If you can possibly attach the pdb file
> we can have a look/
> Raman
>
> On 4 January 2011 23:21, Shesh Nath <sheshnath65.gmail.com> wrote:
>
>> hi everyone
>> I am just new in amber10. I have taken "nuc.nab" file and converted in
>> "nuc.pdb" file. Now I was creatinig "prmtop" and "inpcrd" files for nuc.pdb
>> of the
>> help of xleap.But It is unable to generate this.It is showing to fail the
>> generate the parameter.
>> I request to all of you.Please guide me
>>
>> --
>> SHESH NATH
>> RESEARCH SCHOLAR,
>> THEORETICAL CONDENSED MATTER PHYSICS,
>> DEPARTMENT OF PHYSICS,
>> BANARAS HINDU UNIVERSITY,
>> VARANASI-221005
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>>
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Received on Tue Jan 04 2011 - 21:00:04 PST
