Catein - I think you can use dihedral restraints on that particular region
to fix it to stay in a particular conformation. In RNA and DNA, this works
to keep the structure in A or B-form conformation. I think it should work
in proteins, too.
Best regards,
Ilyas Yildirim, Ph.D.
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-----------------------------------------------------------
On Tue, 4 Jan 2011, Catein Catherine wrote:
>
> Dear Sir/Madam,
>
> Could you mind to let me know if there are any way to set restraint of the helicity of an alpha-helix chains of a protein? Should we define the restraint as angle or distance?
>
> Best regards,
>
> Cat
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Received on Tue Jan 04 2011 - 08:00:01 PST
