I can unzip Amber 9 in Linux Ubuntu. But when i follow the install instruction i have some problems.
uqtpeng1.ce102-0419:~$ AMBERHOME=/home/uqtpeng1/amber9 export AMBERHOME
uqtpeng1.ce102-0419:~$ export PATH=$PATH:$AMBERHOME/exe
uqtpeng1.ce102-0419:~$ cd $AMBERHOME
uqtpeng1.ce102-0419:~/amber9$ patch -p0 -N -r patch-rejects < bugfix.all
That is no problem at this stage. And i see the result of the PATH, using export:
uqtpeng1.ce102-0419:~/amber9$ export
declare -x AMBERHOME="/home/uqtpeng1/amber9"
declare -x COLORTERM="gnome-terminal"
declare -x DBUS_SESSION_BUS_ADDRESS="unix:abstract=/tmp/dbus-KZGeKkkkAP,guid=2bc6b2c6a108e91155cbb71e4ce9b775"
declare -x DEFAULTS_PATH="/usr/share/gconf/gnome.default.path"
declare -x DESKTOP_SESSION="gnome"
declare -x DISPLAY=":0.0"
declare -x GDMSESSION="gnome"
declare -x GDM_KEYBOARD_LAYOUT="us"
declare -x GDM_LANG="en_AU.UTF-8"
declare -x GNOME_DESKTOP_SESSION_ID="this-is-deprecated"
declare -x GNOME_KEYRING_CONTROL="/tmp/keyring-0Y0sXp"
declare -x GTK_MODULES="canberra-gtk-module"
declare -x HOME="/home/uqtpeng1"
declare -x LANG="en_AU.UTF-8"
declare -x LESSCLOSE="/usr/bin/lesspipe %s %s"
declare -x LESSOPEN="| /usr/bin/lesspipe %s"
declare -x LOGNAME="uqtpeng1"
declare -x LS_COLORS="rs=0:di=01;34:ln=01;36:hl=44;37:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00
;36:*.au=00;36:*.flac=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.axa=00;36:*.oga=00;36:*.spx=00;36:*.xspf=00;36:"
declare -x MANDATORY_PATH="/usr/share/gconf/gnome.mandatory.path"
declare -x OLDPWD="/home/uqtpeng1/amber9/src"
declare -x ORBIT_SOCKETDIR="/tmp/orbit-uqtpeng1"
declare -x PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/home/uqtpeng1/amber9/exe:/home/uqtpeng1/amber9/exe"
declare -x PWD="/home/uqtpeng1/amber9"
declare -x SESSION_MANAGER="local/ce102-0419:./tmp/.ICE-unix/1162,unix/ce102-0419:/tmp/.ICE-unix/1162"
declare -x SHELL="/bin/bash"
declare -x SHLVL="1"
declare -x SPEECHD_PORT="7560"
declare -x SSH_AGENT_PID="1196"
declare -x SSH_AUTH_SOCK="/tmp/keyring-0Y0sXp/ssh"
declare -x TERM="xterm"
declare -x USER="uqtpeng1"
declare -x USERNAME="uqtpeng1"
declare -x WINDOWID="62914564"
declare -x XAUTHORITY="/var/run/gdm/auth-for-uqtpeng1-5iWnpZ/database"
declare -x XDG_CONFIG_DIRS="/etc/xdg/xdg-gnome:/etc/xdg"
declare -x XDG_DATA_DIRS="/usr/share/gnome:/usr/local/share/:/usr/share/"
declare -x XDG_SESSION_COOKIE="16d29e8387a8b2bead71e8b84ca03c98-1290385269.877142-1723418458"
That is also all right. Then
uqtpeng1.ce102-0419:~/amber9$ cd $AMBERHOME/src
uqtpeng1.ce102-0419:~/amber9/src$ ./configure g95
AMBERHOME is set to /home/uqtpeng1/amber9
Setting up Amber configuration file for architecture: g95
Using parallel communications library: none
The MKL_HOME environment variable is not defined.
The configuration file, config.h, was successfully created.
uqtpeng1.ce102-0419:~/amber9/src$ make serial
Starting installation of Amber9 (serial) at Mon Nov 22 12:00:03 EST 2010.
cd lib; make install
make[1]: Entering directory `/home/uqtpeng1/amber9/src/lib'
cpp -traditional -P -xassembler-with-cpp new2oldparm.f > _new2oldparm.f
g95 -c -O0 -fno-second-underscore -o new2oldparm.o _new2oldparm.f
make[1]: g95: Command not found
make[1]: *** [new2oldparm.o] Error 127
make[1]: Leaving directory `/home/uqtpeng1/amber9/src/lib'
make: *** [serial] Error 2
The above is error information. I not sure whether the ./configure g95 is correct in here for my computer.
How to select the correct parameter in this? or how can i see my own computer's compiler?
Thanks!
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Received on Wed Nov 24 2010 - 16:30:03 PST
