Many many thanks. I'll check the topology file just to be on the safe side.
- Jose
On Tue, Nov 23, 2010 at 10:25 AM, case <case.biomaps.rutgers.edu> wrote:
> On Tue, Nov 23, 2010, Jose Borreguero wrote:
> >
> > The AMBER manual does not specify if the box created with the "set UNIT
> box
> > { X Y Z }" command is periodic by default. If not, then how can I
> "turn
> > the periodic flag" on ?
>
> If you have a box, then the prmtop files should have all the proper flags,
> but
> you can check for yourself if you want (see the file formats page). Both
> sander and pmemd default to periodic simulations, so you don't need to do
> anything there.
>
> ...dac
>
>
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Received on Tue Nov 23 2010 - 07:30:06 PST
