On Wed, Nov 17, 2010 at 05:44:21PM +0000, Linus Johannissen wrote:
> Thanks for the quick reply!
>
> Here are some more details:
> 1. I untarred Amber 11 and AmberTools 1.4 in /home/linusj/amber, and set $AMBERHOME to /home/linusj/amber/amber11
> 2. I applied the bug fixes for both Amber 11 and AmberTools 1.4
> 3. The directory /home/linusj/amber/amber11/AmberTools/src/netcdf/ was created, but it does not contain libnetcdf.a
> 4. Step-by-step, this was my procedure: 1) untar Amber and AmberTools; 2)
> apply the patches for Amber (apply_bugfix.x bugfix.all); 3) apply the patch
> for AmberTools (patch -p0 -N < bugfix.all) -- and no, I didn't use the same
> "bugfix.all" for both; 4) use "configure intel" in $AMBERHOME/AmberTools/src/
> to generate the config.h files;
STOP
you forgot to build ambertools
make && make install
(cd $AMBERHOME/test && make test)
before continuing
Tru
--
Dr Tru Huynh | http://www.pasteur.fr/recherche/unites/Binfs/
mailto:tru.pasteur.fr | tel/fax +33 1 45 68 87 37/19
Institut Pasteur, 25-28 rue du Docteur Roux, 75724 Paris CEDEX 15 France
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Wed Nov 17 2010 - 11:00:07 PST
