Have you applied the bug fixes?
Also, does the directory /home/linusj/amber/amber11/AmberTools/src/netcdf/
exist? There are far too many variables to really nail down what's
happening here. If you can you send more details about your exact
procedures, your system details (specifically the OS and compiler/compiler
version, etc.), that would help us. Also, the below error message is
unlikely to be the only error message produced by the install process if the
untarring and everything were done properly, since libnetcdf.a should have
been created.
All the best,
Jason
On Wed, Nov 17, 2010 at 11:39 AM, Linus Johannissen <
Linus.Johannissen.manchester.ac.uk> wrote:
> Dear Amber developers and users,
>
> When I try to compile Amber 11 (make serial), I get to the following error
> message:
>
> chmod 644 /home/linusj/amber/amber11/AmberTools/src/netcdf/lib/libnetcdf.a
> chmod: cannot access
> `/home/linusj/amber/amber11/AmberTools/src/netcdf/lib/libnetcdf.a': No such
> file or directory
> make[3]: *** [install-libLTLIBRARIES] Error 1
> make[3]: Leaving directory
> `/home/linusj/amber/amber11/AmberTools/src/netcdf/src/libsrc'
> make[2]: *** [install-am] Error 2
> make[2]: Leaving directory
> `/home/linusj/amber/amber11/AmberTools/src/netcdf/src/libsrc'
> make[1]: *** [install-recursive] Error 1
> make[1]: Leaving directory
> `/home/linusj/amber/amber11/AmberTools/src/netcdf/src'
> make: *** [../netcdf/lib/libnetcdf.a] Error 2
>
> This is after I untarred both Amber 11 and AmberTools 1.4 into the same
> directory, then run "./configure intel" in the $AMBERHOME/AmberTools/src
> directory to create the config.h file in $AMBERHOME/src. I tried running
> "make clean" before "make serial", but got the same result.
>
> Thanks in advance for any suggestions,
> Linus
>
> ____________________
> Dr Linus Johannissen
> Post-doctoral research associate
> Manchester Interdisciplinary Biocentre
> University of Manchester
> UK
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Graduate Student
352-392-4032
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Received on Wed Nov 17 2010 - 09:00:05 PST
