[AMBER] Regarding Hydrogen Bonds

From: Ashish Runthala <askamber100.gmail.com>
Date: Fri, 12 Nov 2010 14:41:42 +0530

Dear Amberites,
I am facing a problem. My predicted Protein Models are not reaching the
accuracy of their native states because of inability of available algorithms
to place H bonds properly in the non-clashing conformational state without
creating additional restraints in the model system. Is it possible, that I
can get the exact algorithm/Script available in AMBER which tells the number
of structurally satisfied Hydrogen bonds in the model PDB checked for.
Please tell me the syntax to use it too.


Ashish Runthala,
Lecturer, Structural Biology Cell,
Biological Sciences Group,
Birla Institute of Technology & Science, Pilani,
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Received on Fri Nov 12 2010 - 01:30:04 PST
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