Dear Amberites,
I am facing a problem. My predicted Protein Models are not reaching the
accuracy of their native states because of inability of available algorithms
to place H bonds properly in the non-clashing conformational state without
creating additional restraints in the model system. Is it possible, that I
can get the exact algorithm/Script available in AMBER which tells the number
of structurally satisfied Hydrogen bonds in the model PDB checked for.
Please tell me the syntax to use it too.
Thanks,
Ashish
--
Ashish Runthala,
Lecturer, Structural Biology Cell,
Biological Sciences Group,
Birla Institute of Technology & Science, Pilani,
INDIA.
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Fri Nov 12 2010 - 01:30:04 PST
