If you're using a custom GCC and the libraries and include files are
in non-standard locations you may need to adjust your environment
variables CPATH and LD_LIBRARY_PATH (or maybe it's DYLD_LIBRARY_PATH
on Macs) to include the $GCCDIR/include and $GCCDIR/lib directories
respectively (where $GCCDIR is the directory of the custom GCC
install).
Mac users feel free to correct me if I'm mistaken.
-Dan
On Thu, Nov 11, 2010 at 11:19 AM, Dean Cuebas
<deancuebas.missouristate.edu> wrote:
> Dear users,
>
> I've tried to install Ambertools1.4 and have a compiler problem.
> I followed the instructions on amberonmac.blogspot.com SATURDAY, MAY 15,
> 2010 post.
>
>
> 1) Dowloaded and installed gcc-snwleo-intel-bin.tar.gz
> 2) type gcc -v and I get:
> ++++++++++++++++++++++++
> Using built-in specs.
> COLLECT_GCC=gcc
> COLLECT_LTO_WRAPPER=/usr/local/libexec/gcc/x86_64-apple-darwin10/4.6.0/lto-w
> rapper
> Target: x86_64-apple-darwin10
> Configured with: ../gcc-4.6-20100703/configure
> --enable-languages=fortran,c++ --host=x86_64-apple-darwin10
> --build=x86_64-apple-darwin10
> Thread model: posix
> gcc version 4.6.0 20100703 (experimental) (GCC)
> ++++++++++++++++++++++++++++++++++
> Which is a higher version of gcc than in the amberonmac demo.
>
> 3) Type gfortran -v and I get:
>
> +++++++++++++++++++++++++++++
> Using built-in specs.
> COLLECT_GCC=gfortran
> COLLECT_LTO_WRAPPER=/usr/local/libexec/gcc/x86_64-apple-darwin10/4.6.0/lto-w
> rapper
> Target: x86_64-apple-darwin10
> Configured with: ../gcc-4.6-20100703/configure
> --enable-languages=fortran,c++ --host=x86_64-apple-darwin10
> --build=x86_64-apple-darwin10
> Thread model: posix
> gcc version 4.6.0 20100703 (experimental) (GCC)
> ++++++++++++++++++++++++++++++++++++
>
> 4) I cd to the src directory of Ambertools and type
> ./configure -macAccelerate gnu
>
> +++++++++++++++++++++++++++++++++++++++++++++
> Your AMBERHOME environment variable should be set to /usr/local/amber11
>
>
> Obtaining the gnu suite version:
> gcc -v
> The version is 4.6.0
>
> Testing the gcc compiler:
> gcc -DUSE_AMBER_C9XCOMPLEX -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE
> -o testp testp.c
> testp.c:1:19: fatal error: stdio.h: No such file or directory
> compilation terminated.
> ./configure: line 967: ./testp: No such file or directory
> Error: Unable to compile a C program using gcc -DUSE_AMBER_C9XCOMPLEX
> -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE
> Please check your compiler settings or configure flags.
> ++++++++++++++++++++++++++++++++++++++++++++++
>
> Any help would be appreciated!
>
> Thanks in advance.
>
> Dean
> --
> Dr. Dean Cuebas, Associate Prof of Chemistry
> deancuebas.missouristate.edu, Ph 417-836-8567 FAX 417-836-5507
> Dept. of Chemistry, Missouri State University
> Springfield, Missouri 65897
>
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Thu Nov 11 2010 - 09:00:07 PST
