Amber Archive Nov 2010: by thread

Re: [AMBER] GPU high temperature unfolding simulation Ye MEI (Sun Oct 31 2010 - 09:29:04 PDT)
- Re: [AMBER] GPU high temperature unfolding simulation Ross Walker (Tue Nov 02 2010 - 09:07:13 PDT)
- Re: [AMBER] GPU high temperature unfolding simulation andy ng (Tue Nov 02 2010 - 17:29:27 PDT)
[AMBER] Interaction energy calculation aneesh cna (Sun Oct 31 2010 - 22:04:46 PDT)
- Re: [AMBER] Interaction energy calculation Alessandro Nascimento (Mon Nov 01 2010 - 09:39:19 PDT)
Re: [AMBER] SCC-DFT orbitals Gustavo Seabra (Mon Nov 01 2010 - 04:30:06 PDT)
- Re: [AMBER] SCC-DFT orbitals arikcohen (Mon Nov 01 2010 - 11:20:39 PDT)
  - Re: [AMBER] SCC-DFT orbitals Gustavo Seabra (Mon Nov 01 2010 - 11:28:58 PDT)
[AMBER] Forward: Sander file name length bug Don.Bashford.stjude.org (Mon Nov 01 2010 - 09:10:58 PDT)
- Re: [AMBER] Forward: Sander file name length bug case (Mon Nov 01 2010 - 09:49:33 PDT)
[AMBER] possible bug: problem with defining per-residue energies using RRES & LRES g t (Mon Nov 01 2010 - 12:54:26 PDT)
- Re: [AMBER] possible bug: problem with defining per-residue energies using RRES & LRES Jason Swails (Mon Nov 01 2010 - 13:06:12 PDT)
  - Re: [AMBER] possible bug: problem with defining per-residue energies using RRES & LRES g t (Fri Nov 05 2010 - 10:43:25 PDT)
    - Re: [AMBER] possible bug: problem with defining per-residue energies using RRES & LRES Jason Swails (Fri Nov 05 2010 - 11:03:45 PDT)
    - Re: [AMBER] possible bug: problem with defining per-residue energies using RRES & LRES g t (Fri Nov 05 2010 - 11:05:42 PDT)
    - Re: [AMBER] possible bug: problem with defining per-residue energies using RRES & LRES case (Fri Nov 05 2010 - 12:53:23 PDT)
    - Re: [AMBER] possible bug: problem with defining per-residue energies using RRES & LRES Jason Swails (Fri Nov 05 2010 - 14:20:33 PDT)
[AMBER] RESP at antechamber juan roman (Mon Nov 01 2010 - 21:16:55 PDT)
- Re: [AMBER] RESP at antechamber Jason Swails (Tue Nov 02 2010 - 06:13:53 PDT)
  - Re: [AMBER] RESP at antechamber juan roman (Sat Nov 06 2010 - 15:49:08 PDT)
    - Re: [AMBER] RESP at antechamber juan roman (Sat Nov 06 2010 - 15:50:46 PDT)
[AMBER] AMBER: molsurf.c error 王亚茹 (Tue Nov 02 2010 - 03:10:05 PDT)
- Re: [AMBER] AMBER: molsurf.c error Jason Swails (Tue Nov 02 2010 - 06:18:33 PDT)
[AMBER] Amber10 segmentation fault with AIX Andrew Emerson (Tue Nov 02 2010 - 04:22:00 PDT)
- Re: [AMBER] Amber10 segmentation fault with AIX Ross Walker (Tue Nov 02 2010 - 09:07:13 PDT)
  - Re: [AMBER] Amber10 segmentation fault with AIX Andrew Emerson (Thu Nov 04 2010 - 02:45:50 PDT)
Re: [AMBER] extract distribution from PairwiseDistances Yannick SPILL (Tue Nov 02 2010 - 06:12:14 PDT)
- Re: [AMBER] extract distribution from PairwiseDistances Bill Ross (Tue Nov 02 2010 - 10:14:48 PDT)
[AMBER] Cluster PairwiseDistances Beale, John (Tue Nov 02 2010 - 06:29:58 PDT)
[AMBER] Plumed David Beveridge (Tue Nov 02 2010 - 07:13:06 PDT)
[AMBER] Proj into RMSD Space David Beveridge (Tue Nov 02 2010 - 07:15:50 PDT)
[AMBER] Plumed David Beveridge (Tue Nov 02 2010 - 07:42:03 PDT)
[AMBER] Remove solvent molecules from the rst files Baptiste Legrand (Tue Nov 02 2010 - 08:21:33 PDT)
- Re: [AMBER] Remove solvent molecules from the rst files Lekpa Duukori (Tue Nov 02 2010 - 08:28:39 PDT)
  - Re: [AMBER] Remove solvent molecules from the rst files Jason Swails (Tue Nov 02 2010 - 08:59:33 PDT)
[AMBER] Problem of RMSd plotting using merged tarjectories Hoshin Kim (Tue Nov 02 2010 - 22:48:32 PDT)
- Re: [AMBER] Problem of RMSd plotting using merged tarjectories Bill Ross (Tue Nov 02 2010 - 12:21:43 PDT)
[AMBER] R.E.D.III.x tutorial1 question Computational Chemist (Tue Nov 02 2010 - 13:12:42 PDT)
- Re: [AMBER] R.E.D.III.x tutorial1 question Jason Swails (Tue Nov 02 2010 - 14:47:52 PDT)
- Re: [AMBER] R.E.D.III.x tutorial1 question FyD (Tue Nov 02 2010 - 23:53:31 PDT)
[AMBER] j-restrained peptide Rossella Noschese (Wed Nov 03 2010 - 06:07:23 PDT)
- Re: [AMBER] j-restrained peptide case (Wed Nov 03 2010 - 07:36:23 PDT)
  - Re: [AMBER] j-restrained peptide Rossella Noschese (Wed Nov 03 2010 - 09:01:55 PDT)
    - Re: [AMBER] j-restrained peptide case (Wed Nov 03 2010 - 18:01:17 PDT)
    - Re: [AMBER] j-restrained peptide Rossella Noschese (Mon Nov 22 2010 - 03:23:54 PST)
[AMBER] using MM-PBSA with Zn ions. Roman Osman (Wed Nov 03 2010 - 09:17:13 PDT)
- Re: [AMBER] using MM-PBSA with Zn ions. Bill Miller III (Wed Nov 03 2010 - 10:02:37 PDT)
  - Re: [AMBER] using MM-PBSA with Zn ions. Roman Osman (Wed Nov 03 2010 - 11:09:44 PDT)
  - Re: [AMBER] using MM-PBSA with Zn ions. Roman Osman (Mon Nov 08 2010 - 20:05:29 PST)
[AMBER] Targeted MD Jordan, Brad (Wed Nov 03 2010 - 09:55:46 PDT)
- Re: [AMBER] Targeted MD Carlos Simmerling (Wed Nov 03 2010 - 10:03:13 PDT)
  - Re: [AMBER] Targeted MD Jordan, Brad (Wed Nov 03 2010 - 10:09:31 PDT)
Re: [AMBER] Targeted MD - minimization problem Jordan, Brad (Wed Nov 03 2010 - 11:05:31 PDT)
[AMBER] how to change the charge in all_amino94.lib zhihong ke (Wed Nov 03 2010 - 12:53:54 PDT)
- Re: [AMBER] how to change the charge in all_amino94.lib FyD (Wed Nov 03 2010 - 13:18:32 PDT)
- Re: [AMBER] how to change the charge in all_amino94.lib Bill Ross (Wed Nov 03 2010 - 13:29:25 PDT)
- Re: [AMBER] how to change the charge in all_amino94.lib Bill Ross (Wed Nov 03 2010 - 13:32:10 PDT)
  - Re: [AMBER] how to change the charge in all_amino94.lib zhihong ke (Wed Nov 03 2010 - 13:42:56 PDT)
- Re: [AMBER] how to change the charge in all_amino94.lib Bill Ross (Wed Nov 03 2010 - 13:58:14 PDT)
[AMBER] How the box info is used Ilyas Yildirim (Wed Nov 03 2010 - 14:54:24 PDT)
- Re: [AMBER] How the box info is used Bill Ross (Wed Nov 03 2010 - 15:01:28 PDT)
  - Re: [AMBER] How the box info is used Ilyas Yildirim (Wed Nov 03 2010 - 15:22:24 PDT)
    - Re: [AMBER] How the box info is used Thomas Cheatham III (Wed Nov 03 2010 - 15:30:48 PDT)
    - Re: [AMBER] How the box info is used Ilyas Yildirim (Wed Nov 03 2010 - 18:00:56 PDT)
- Re: [AMBER] How the box info is used Bill Ross (Wed Nov 03 2010 - 15:34:27 PDT)
  - Re: [AMBER] How the box info is used Ilyas Yildirim (Wed Nov 03 2010 - 17:39:38 PDT)
- Re: [AMBER] How the box info is used Bill Ross (Wed Nov 03 2010 - 19:44:53 PDT)
  - Re: [AMBER] How the box info is used Ilyas Yildirim (Wed Nov 03 2010 - 21:48:21 PDT)
[AMBER] MMPBSA parameters Michael Petersen (Wed Nov 03 2010 - 14:58:30 PDT)
- Re: [AMBER] MMPBSA parameters Jason Swails (Wed Nov 03 2010 - 16:09:19 PDT)
[AMBER] SASA Beale, John (Thu Nov 04 2010 - 04:33:43 PDT)
- Re: [AMBER] SASA Jason Swails (Thu Nov 04 2010 - 06:13:02 PDT)
Re: [AMBER] Error message from binding_energy.mmpbsa Jason Swails (Thu Nov 04 2010 - 04:49:21 PDT)
- Re: [AMBER] Error message from binding_energy.mmpbsa bin wang (Thu Nov 04 2010 - 06:49:36 PDT)
  - Re: [AMBER] Error message from binding_energy.mmpbsa Jason Swails (Thu Nov 04 2010 - 06:52:30 PDT)
    - Re: [AMBER] Error message from binding_energy.mmpbsa bin wang (Thu Nov 04 2010 - 11:53:52 PDT)
[AMBER] ptraj-area per lipid and order parameter colvin (Thu Nov 04 2010 - 05:34:33 PDT)
[AMBER] mm_pbsa.pl doesn't work after the bugfixes bin wang (Thu Nov 04 2010 - 06:58:25 PDT)
[AMBER] Binding energy and conformation John S (Thu Nov 04 2010 - 08:54:13 PDT)
- Re: [AMBER] Binding energy and conformation Jason Swails (Thu Nov 04 2010 - 09:22:35 PDT)
[AMBER] AMBER QMMM MPI scaling Xiaohu Li (Thu Nov 04 2010 - 09:10:11 PDT)
- Re: [AMBER] AMBER QMMM MPI scaling Ross Walker (Thu Nov 04 2010 - 10:38:23 PDT)
[AMBER] Release of R.E.D. Server 2.0 FyD (Thu Nov 04 2010 - 02:50:36 PDT)
[AMBER] amber tool 1.4 Install error Alice Wang (Thu Nov 04 2010 - 20:58:38 PDT)
- Re: [AMBER] amber tool 1.4 Install error David Watson (Thu Nov 04 2010 - 21:04:57 PDT)
  - Re: [AMBER] amber tool 1.4 Install error Alice Wang (Thu Nov 04 2010 - 21:08:51 PDT)
    - Re: [AMBER] amber tool 1.4 Install error Alice Wang (Thu Nov 04 2010 - 21:15:03 PDT)
    - Re: [AMBER] amber tool 1.4 Install error David Watson (Thu Nov 04 2010 - 21:21:26 PDT)
    - Re: [AMBER] amber tool 1.4 Install error case (Fri Nov 05 2010 - 06:43:27 PDT)
    - Re: [AMBER] amber tool 1.4 Install error Tru Huynh (Sun Nov 07 2010 - 16:33:44 PST)
Re: [AMBER] MMPBSA ligand/receptor selections mirage . (Fri Nov 05 2010 - 04:52:35 PDT)
[AMBER] Question about FEP and GPU TJ Mustard (Fri Nov 05 2010 - 15:26:54 PDT)
- Re: [AMBER] Question about FEP and GPU Jason Swails (Fri Nov 05 2010 - 20:20:09 PDT)
[AMBER] (no subject) kanon gemini (Sat Nov 06 2010 - 03:09:27 PDT)
[AMBER] solvatebox John S (Sat Nov 06 2010 - 15:17:44 PDT)
- Re: [AMBER] solvatebox case (Sat Nov 06 2010 - 19:14:33 PDT)
- Re: [AMBER] solvatebox Bill Ross (Sat Nov 06 2010 - 19:22:09 PDT)
  - Re: [AMBER] solvatebox M. L. Dodson (Sat Nov 06 2010 - 20:56:58 PDT)
[AMBER] QM/MM energy terms Davide Branduardi (Sun Nov 07 2010 - 16:04:44 PST)
- Re: [AMBER] QM/MM energy terms Andreas Goetz (Sun Nov 07 2010 - 16:56:59 PST)
[AMBER] Extra points Jason S Grosch (Sun Nov 07 2010 - 19:05:15 PST)
- Re: [AMBER] Extra points case (Mon Nov 08 2010 - 05:58:55 PST)
[AMBER] How to define trivalent Sulphur ligand atom Mannan (Mon Nov 08 2010 - 00:00:39 PST)
- Re: [AMBER] How to define trivalent Sulphur ligand atom Jason Swails (Mon Nov 08 2010 - 08:18:42 PST)
[AMBER] How to prepare the MMPBSA file? xuemeiwang1103 (Mon Nov 08 2010 - 00:03:46 PST)
[AMBER] mmpbsa error Alice Wang (Mon Nov 08 2010 - 00:46:29 PST)
- Re: [AMBER] mmpbsa error Alice Wang (Mon Nov 08 2010 - 06:26:43 PST)
  - Re: [AMBER] mmpbsa error Ray Luo, Ph.D. (Mon Nov 08 2010 - 10:05:22 PST)
    - Re: [AMBER] mmpbsa error Alice Wang (Mon Nov 08 2010 - 15:39:47 PST)
    - Re: [AMBER] mmpbsa error Alice Wang (Mon Nov 08 2010 - 16:15:19 PST)
[AMBER] How to prepare the MMPBSA file? xuemeiwang1103 (Mon Nov 08 2010 - 01:24:23 PST)
- Re: [AMBER] How to prepare the MMPBSA file? Bill Miller III (Mon Nov 08 2010 - 03:45:12 PST)
  - Re: [AMBER] How to prepare the MMPBSA file? Jason Swails (Mon Nov 08 2010 - 08:07:21 PST)
[AMBER] About NEB calculation form amber 11 Buddhadev Maiti (Mon Nov 08 2010 - 11:26:46 PST)
- Re: [AMBER] About NEB calculation form amber 11 Carlos Simmerling (Mon Nov 08 2010 - 11:42:01 PST)
[AMBER] About NEB calculation from amber 11 Buddhadev Maiti (Mon Nov 08 2010 - 12:12:12 PST)
Re: [AMBER] Amber force-field compatibility Ross Walker (Mon Nov 08 2010 - 13:32:50 PST)
- Re: [AMBER] Amber force-field compatibility Carlos Simmerling (Mon Nov 08 2010 - 14:06:43 PST)
[AMBER] About NEB calculation from amber 11 Buddhadev Maiti (Mon Nov 08 2010 - 14:41:14 PST)
- Re: [AMBER] About NEB calculation from amber 11 Carlos Simmerling (Mon Nov 08 2010 - 16:52:44 PST)
[AMBER] Amber 11 single and multiple GPU question Frank X. Vázquez (Mon Nov 08 2010 - 15:17:15 PST)
- Re: [AMBER] Amber 11 single and multiple GPU question Scott Le Grand (Mon Nov 08 2010 - 15:52:44 PST)
- Re: [AMBER] Amber 11 single and multiple GPU question Ross Walker (Mon Nov 08 2010 - 16:50:51 PST)
Re: [AMBER] TI +- variance is coming out to be very high sunita gupta (Mon Nov 08 2010 - 22:20:30 PST)
[AMBER] (no subject) Yokota_Akihiro.takeda.co.jp (Tue Nov 09 2010 - 01:19:08 PST)
- Re: [AMBER] (no subject) Jason Swails (Tue Nov 09 2010 - 08:26:41 PST)
[AMBER] "excluded atoms" declaration Yokota_Akihiro.takeda.co.jp (Tue Nov 09 2010 - 01:24:23 PST)
- Re: [AMBER] "excluded atoms" declaration Carlos Simmerling (Tue Nov 09 2010 - 04:03:37 PST)
  - Re: [AMBER] "excluded atoms" declaration Jason Swails (Tue Nov 09 2010 - 09:11:10 PST)
    - Re: [AMBER] "excluded atoms" declaration Yokota_Akihiro.takeda.co.jp (Tue Nov 09 2010 - 16:55:58 PST)
  - Re: [AMBER] "excluded atoms" declaration Yokota_Akihiro.takeda.co.jp (Tue Nov 09 2010 - 16:37:44 PST)
[AMBER] RMSD vs reference substructure Kasprzak, Wojciech (NIH/NCI) [C] (Tue Nov 09 2010 - 06:29:19 PST)
- Re: [AMBER] RMSD vs reference substructure Thomas Cheatham (Tue Nov 09 2010 - 06:45:14 PST)
[AMBER] Problem in MD simulations of DNA using ABC protocol abc def (Tue Nov 09 2010 - 09:54:25 PST)
- Re: [AMBER] Problem in MD simulations of DNA using ABC protocol Thomas Cheatham III (Tue Nov 09 2010 - 10:35:29 PST)
[AMBER] Inquire about AMBER10 ? Xingqing Xiao (Tue Nov 09 2010 - 14:15:24 PST)
- Re: [AMBER] Inquire about AMBER10 ? Jason Swails (Tue Nov 09 2010 - 15:06:15 PST)
  - Re: [AMBER] Inquire about AMBER10 ? Jason Swails (Tue Nov 09 2010 - 15:10:01 PST)
[AMBER] mmpbsa.py - weird nmode results Khaled Barakat (Tue Nov 09 2010 - 16:08:45 PST)
- Re: [AMBER] mmpbsa.py - weird nmode results Bill Miller III (Tue Nov 09 2010 - 18:03:16 PST)
  - Re: [AMBER] mmpbsa.py - weird nmode results Jason Swails (Wed Nov 10 2010 - 07:01:35 PST)
[AMBER] Counting water molecules aneesh cna (Tue Nov 09 2010 - 21:36:39 PST)
- [AMBER] about dihedralcluster Balazs Jojart (Wed Nov 10 2010 - 04:56:49 PST)
  - Re: [AMBER] about dihedralcluster Daniel Roe (Wed Nov 10 2010 - 09:04:36 PST)
    - Re: [AMBER] about dihedralcluster Balazs Jojart (Wed Nov 10 2010 - 11:36:52 PST)
[AMBER] About NEB calculation in NPT ensemble Buddhadev Maiti (Wed Nov 10 2010 - 08:06:28 PST)
- Re: [AMBER] About NEB calculation in NPT ensemble Carlos Simmerling (Wed Nov 10 2010 - 08:08:00 PST)
[AMBER] MMPBSA.py Error: Unknown block, '&decomp'. Check input! kbarakat.ualberta.ca (Wed Nov 10 2010 - 12:09:19 PST)
- Re: [AMBER] MMPBSA.py Error: Unknown block, '&decomp'. Check input! Bill Miller III (Wed Nov 10 2010 - 12:18:09 PST)
  - Re: [AMBER] MMPBSA.py Error: Unknown block, '&decomp'. Check input! Jason Swails (Wed Nov 10 2010 - 13:44:40 PST)
[AMBER] relaxation of the density correlation functions of a molecule Philippe Pinard (Wed Nov 10 2010 - 14:06:57 PST)
- Re: [AMBER] relaxation of the density correlation functions of a molecule Philippe Pinard (Fri Nov 12 2010 - 08:20:30 PST)
[AMBER] Serious problem at specific time point Hoshin Kim (Wed Nov 10 2010 - 00:39:34 PST)
- Re: [AMBER] Serious problem at specific time point Bill Ross (Wed Nov 10 2010 - 15:48:47 PST)
- Re: [AMBER] Serious problem at specific time point Jason Swails (Wed Nov 10 2010 - 15:53:24 PST)
- Re: [AMBER] Serious problem at specific time point Thomas Cheatham III (Wed Nov 10 2010 - 16:09:37 PST)
  - Re: [AMBER] Serious problem at specific time point Jason Swails (Thu Nov 11 2010 - 05:46:40 PST)
    - Re: [AMBER] Serious problem at specific time point Hoshin Kim (Wed Nov 10 2010 - 23:31:01 PST)
- Re: [AMBER] Serious problem at specific time point Bill Ross (Thu Nov 11 2010 - 13:35:27 PST)
[AMBER] To All - Consider Switching to NetCDF Daniel Roe (Thu Nov 11 2010 - 05:58:30 PST)
[AMBER] Compiling Ambertools 1.4 on MacBook SnowLeopard10.6.4 Dean Cuebas (Thu Nov 11 2010 - 08:19:03 PST)
- Re: [AMBER] Compiling Ambertools 1.4 on MacBook SnowLeopard10.6.4 Jason Swails (Thu Nov 11 2010 - 08:36:37 PST)
  - Re: [AMBER] Compiling Ambertools 1.4 on MacBook SnowLeopard10.6.4 Dean Cuebas (Fri Nov 12 2010 - 12:16:06 PST)
    - Re: [AMBER] Compiling Ambertools 1.4 on MacBook SnowLeopard10.6.4 Jason Swails (Fri Nov 12 2010 - 12:42:22 PST)
    - Re: [AMBER] Compiling Ambertools 1.4 on MacBook SnowLeopard10.6.4 Dean Cuebas (Fri Nov 12 2010 - 14:28:52 PST)
- Re: [AMBER] Compiling Ambertools 1.4 on MacBook SnowLeopard10.6.4 David Watson (Thu Nov 11 2010 - 08:37:20 PST)
  - Re: [AMBER] Compiling Ambertools 1.4 on MacBook SnowLeopard10.6.4 Jason Swails (Thu Nov 11 2010 - 09:18:54 PST)
- Re: [AMBER] Compiling Ambertools 1.4 on MacBook SnowLeopard10.6.4 Daniel Roe (Thu Nov 11 2010 - 08:42:11 PST)
  - Re: [AMBER] Compiling Ambertools 1.4 on MacBook SnowLeopard10.6.4 Jason Swails (Thu Nov 11 2010 - 09:23:50 PST)
- Re: [AMBER] Compiling Ambertools 1.4 on MacBook SnowLeopard10.6.4 Bill Ross (Thu Nov 11 2010 - 09:42:00 PST)
[AMBER] mm_pbsa.pl and MMPBSA.py issues in Amber-11 Jemmy Hu (Thu Nov 11 2010 - 10:52:18 PST)
- Re: [AMBER] mm_pbsa.pl and MMPBSA.py issues in Amber-11 Jason Swails (Thu Nov 11 2010 - 10:59:06 PST)
  - Re: [AMBER] mm_pbsa.pl and MMPBSA.py issues in Amber-11 Jemmy Hu (Thu Nov 11 2010 - 11:46:35 PST)
    - Re: [AMBER] mm_pbsa.pl and MMPBSA.py issues in Amber-11 Jason Swails (Thu Nov 11 2010 - 12:50:12 PST)
[AMBER] Atom type assignment using GAFF abc def (Thu Nov 11 2010 - 18:02:43 PST)
- [AMBER] Fwd: Atom type assignment using GAFF abc def (Fri Nov 12 2010 - 06:55:37 PST)
[AMBER] decomposition problems fancy2012 (Thu Nov 11 2010 - 18:13:42 PST)
- Re: [AMBER] decomposition problems Bill Miller III (Thu Nov 11 2010 - 18:18:53 PST)
- Re: [AMBER] decomposition problems fancy2012 (Sat Nov 13 2010 - 01:34:44 PST)
- Re: [AMBER] decomposition problems fancy2012 (Sat Nov 13 2010 - 17:46:31 PST)
[AMBER] about MMPBSA xuemeiwang1103 (Fri Nov 12 2010 - 00:07:21 PST)
[AMBER] Regarding Hydrogen Bonds Ashish Runthala (Fri Nov 12 2010 - 01:11:42 PST)
[AMBER] nonpolar term in MM-PBSA Chanchal (Fri Nov 12 2010 - 07:50:17 PST)
- Re: [AMBER] nonpolar term in MM-PBSA Jason Swails (Fri Nov 12 2010 - 08:02:11 PST)
  - Re: [AMBER] nonpolar term in MM-PBSA Chanchal (Fri Nov 12 2010 - 08:14:52 PST)
[AMBER] protonate a non standard residu Philippe Pinard (Fri Nov 12 2010 - 08:19:22 PST)
- Re: [AMBER] protonate a non standard residu Jason Swails (Fri Nov 12 2010 - 08:34:55 PST)
- Re: [AMBER] protonate a non standard residu Philippe Pinard (Fri Nov 12 2010 - 08:41:46 PST)
[AMBER] how to configure/compile to get sander.RISM? Magdalena Gruziel (Fri Nov 12 2010 - 10:40:11 PST)
- Re: [AMBER] how to configure/compile to get sander.RISM? Jason Swails (Fri Nov 12 2010 - 11:12:13 PST)
  - Re: [AMBER] how to configure/compile to get sander.RISM? Tyler Luchko (Fri Nov 12 2010 - 11:29:24 PST)
[AMBER] can mmpbsa calculation be restarted by the file "restrt"? Alice Wang (Sat Nov 13 2010 - 19:17:13 PST)
- Re: [AMBER] can mmpbsa calculation be restarted by the file "restrt"? Jason Swails (Sat Nov 13 2010 - 22:02:56 PST)
  - [AMBER] Amber10 installation problem on MPICH1 Shaandar Nyamtulga (Mon Nov 15 2010 - 20:02:14 PST)
    - Re: [AMBER] Amber10 installation problem on MPICH1 Ye MEI (Mon Nov 15 2010 - 20:24:19 PST)
    - Re: [AMBER] Amber10 installation problem on MPICH1 Shaandar Nyamtulga (Mon Nov 15 2010 - 20:45:34 PST)
    - Re: [AMBER] Amber10 installation problem on MPICH1 Ye MEI (Mon Nov 15 2010 - 20:59:29 PST)
    - Re: [AMBER] Amber10 installation problem on MPICH1 Shaandar Nyamtulga (Mon Nov 15 2010 - 21:33:13 PST)
    - Re: [AMBER] Amber10 installation problem on MPICH1 case (Tue Nov 16 2010 - 04:29:34 PST)
    - Re: [AMBER] Amber10 installation problem on MPICH1 Shaandar Nyamtulga (Tue Nov 16 2010 - 18:21:24 PST)
    - Re: [AMBER] Amber10 installation problem on MPICH1 Shaandar Nyamtulga (Tue Nov 16 2010 - 18:38:52 PST)
    - Re: [AMBER] Amber10 installation problem on MPICH1 Jason Swails (Tue Nov 16 2010 - 20:04:12 PST)
    - Re: [AMBER] Amber10 installation problem on MPICH1 Shaandar Nyamtulga (Thu Nov 18 2010 - 00:32:37 PST)
    - Re: [AMBER] Amber10 installation problem on MPICH1 case (Thu Nov 18 2010 - 04:51:17 PST)
    - [AMBER] Amber10 installation problem Shaandar Nyamtulga (Tue Nov 23 2010 - 19:43:57 PST)
    - Re: [AMBER] Amber10 installation problem case (Wed Nov 24 2010 - 07:29:03 PST)
[AMBER] about MMPBSA xuemeiwang1103 (Sat Nov 13 2010 - 19:59:42 PST)
- Re: [AMBER] about MMPBSA Dwight McGee (Sun Nov 14 2010 - 15:19:07 PST)
[AMBER] GPU related issues Ye MEI (Sun Nov 14 2010 - 19:45:11 PST)
- Re: [AMBER] GPU related issues case (Mon Nov 15 2010 - 04:48:03 PST)
- Re: [AMBER] GPU related issues Ross Walker (Fri Nov 19 2010 - 09:23:48 PST)
  - Re: [AMBER] GPU related issues Scott Le Grand (Fri Nov 19 2010 - 09:38:12 PST)
    - Re: [AMBER] GPU related issues/GTX400 series Sergio R Aragon (Fri Nov 19 2010 - 10:16:56 PST)
    - Re: [AMBER] GPU related issues/GTX400 series Scott Le Grand (Fri Nov 19 2010 - 20:23:13 PST)
    - Re: [AMBER] GPU related issues/GTX400 series Gould, Ian R (Sat Nov 20 2010 - 02:44:08 PST)
    - Re: [AMBER] GPU related issues/GTX400 series and GTX580 Gould, Ian R (Wed Nov 24 2010 - 03:23:55 PST)
    - Re: [AMBER] GPU related issues/GTX400 series tanya singh (Sat Nov 20 2010 - 04:32:04 PST)
[AMBER] ptraj distance mirage . (Mon Nov 15 2010 - 00:19:51 PST)
[AMBER] Watershell fernando (Mon Nov 15 2010 - 01:18:23 PST)
[AMBER] metadynamics fancy2012 (Mon Nov 15 2010 - 05:31:16 PST)
- Re: [AMBER] metadynamics Jason Swails (Mon Nov 15 2010 - 06:25:18 PST)
  - Re: [AMBER] metadynamics fancy2012 (Tue Nov 16 2010 - 03:10:00 PST)
- Re: [AMBER] metadynamics Marek Maly (Mon Nov 15 2010 - 06:46:58 PST)
  - [AMBER] Citation of Amber Giorgos Lamprinidis (Mon Nov 15 2010 - 06:59:16 PST)
    - Re: [AMBER] Citation of Amber Marek Maly (Mon Nov 15 2010 - 07:08:08 PST)
- Re: [AMBER] metadynamics Davide Branduardi (Mon Nov 15 2010 - 07:21:51 PST)
[AMBER] mmpbsa with rigid bonds ? Jose Borreguero (Mon Nov 15 2010 - 06:01:25 PST)
- Re: [AMBER] mmpbsa with rigid bonds ? Bill Miller III (Mon Nov 15 2010 - 06:14:41 PST)
  - Re: [AMBER] mmpbsa with rigid bonds ? Jose Borreguero (Mon Nov 15 2010 - 07:40:41 PST)
    - Re: [AMBER] mmpbsa with rigid bonds ? Jason Swails (Mon Nov 15 2010 - 07:47:54 PST)
    - Re: [AMBER] mmpbsa with rigid bonds ? Jose Borreguero (Mon Nov 15 2010 - 08:20:40 PST)
- Re: [AMBER] mmpbsa with rigid bonds ? Adrian Roitberg (Mon Nov 15 2010 - 06:37:45 PST)
[AMBER] Sander with restrained atoms Dian Jiao (Mon Nov 15 2010 - 14:04:31 PST)
- Re: [AMBER] Sander with restrained atoms case (Mon Nov 15 2010 - 18:52:16 PST)
  - Re: [AMBER] Sander with restrained atoms Dian Jiao (Mon Nov 15 2010 - 20:37:48 PST)
    - Re: [AMBER] Sander with restrained atoms case (Tue Nov 16 2010 - 04:13:48 PST)
[AMBER] Restraints questions Mickey Richards (Mon Nov 15 2010 - 15:17:41 PST)
- Re: [AMBER] Restraints questions case (Mon Nov 22 2010 - 08:39:27 PST)
  - Re: [AMBER] Restraints questions Mickey Richards (Mon Nov 22 2010 - 10:41:48 PST)
[AMBER] STOP no longer optional in mm_pbsa.pl Don.Bashford.stjude.org (Tue Nov 16 2010 - 04:01:28 PST)
[AMBER] gaff-parametrisation - how many conformation for a flexible molecule Schlesier, Thomas (Tue Nov 16 2010 - 14:14:40 PST)
- Re: [AMBER] gaff-parametrisation - how many conformation for a flexible molecule FyD (Wed Nov 17 2010 - 00:18:27 PST)
[AMBER] nmode error xuemeiwang1103 (Wed Nov 17 2010 - 04:37:20 PST)
- Re: [AMBER] nmode error xuemeiwang1103 (Thu Nov 18 2010 - 03:43:23 PST)
  - Re: [AMBER] nmode error Jason Swails (Thu Nov 18 2010 - 07:21:45 PST)
[AMBER] D2O Philippe Pinard (Wed Nov 17 2010 - 05:56:37 PST)
- Re: [AMBER] D2O Adrian Roitberg (Wed Nov 17 2010 - 06:00:19 PST)
  - Re: [AMBER] D2O setyanto md (Sun Nov 21 2010 - 15:04:40 PST)
    - Re: [AMBER] D2O Jason Swails (Sun Nov 21 2010 - 15:20:18 PST)
    - Re: [AMBER] D2O case (Sun Nov 21 2010 - 18:27:30 PST)
- Re: [AMBER] D2O Bill Ross (Mon Nov 22 2010 - 09:36:05 PST)
[AMBER] Amber 11 installation problems Linus Johannissen (Wed Nov 17 2010 - 08:39:47 PST)
- Re: [AMBER] Amber 11 installation problems Jason Swails (Wed Nov 17 2010 - 08:47:27 PST)
  - Re: [AMBER] Amber 11 installation problems Linus Johannissen (Wed Nov 17 2010 - 09:44:21 PST)
    - Re: [AMBER] Amber 11 installation problems case (Wed Nov 17 2010 - 10:36:00 PST)
    - Re: [AMBER] Amber 11 installation problems Tru Huynh (Wed Nov 17 2010 - 10:40:54 PST)
    - Re: [AMBER] Amber 11 installation problems Linus Johannissen (Wed Nov 17 2010 - 14:34:53 PST)
    - Re: [AMBER] Amber 11 installation problems Jason Swails (Wed Nov 17 2010 - 15:17:28 PST)
    - Re: [AMBER] Amber 11 installation problems Scott Brozell (Wed Nov 17 2010 - 19:37:08 PST)
    - [AMBER] Clarification in HBond analysis kureeckal ramesh (Wed Nov 17 2010 - 22:35:00 PST)
    - [AMBER] Clarification in HBond analysis kureeckal ramesh (Mon Nov 22 2010 - 19:13:29 PST)
    - [AMBER] Error message in AMBER when running protein-protein complexes. Catein Catherine (Wed Nov 17 2010 - 20:34:08 PST)
    - Re: [AMBER] Error message in AMBER when running protein-protein complexes. Jason Swails (Thu Nov 18 2010 - 07:02:06 PST)
    - [AMBER] How to study the dissociation pathway for two proteins with AMBER10? Catein Catherine (Thu Nov 18 2010 - 18:59:54 PST)
    - Re: [AMBER] How to study the dissociation pathway for two proteins with AMBER10? Jason Swails (Fri Nov 19 2010 - 07:47:42 PST)
[AMBER] about velocity output hong-bin Xie (Wed Nov 17 2010 - 14:59:39 PST)
- Re: [AMBER] about velocity output Jason Swails (Wed Nov 17 2010 - 15:21:22 PST)
  - Re: [AMBER] about velocity output hong-bin Xie (Wed Nov 17 2010 - 16:06:34 PST)
    - Re: [AMBER] about velocity output Jason Swails (Wed Nov 17 2010 - 16:28:05 PST)
    - Re: [AMBER] about velocity output hong-bin Xie (Wed Nov 17 2010 - 16:43:46 PST)
    - Re: [AMBER] about velocity output M. L. Dodson (Wed Nov 17 2010 - 19:17:01 PST)
    - Re: [AMBER] about velocity output George Madalin Giambasu (Thu Nov 18 2010 - 05:33:12 PST)
    - Re: [AMBER] about velocity output hong-bin Xie (Thu Nov 18 2010 - 10:32:09 PST)
[AMBER] LJ interactions and cutoff manoj singh (Wed Nov 17 2010 - 22:45:49 PST)
- Re: [AMBER] LJ interactions and cutoff case (Thu Nov 18 2010 - 04:45:54 PST)
[AMBER] Truncated Octahedron Box in Amber9 Bertrand Russell (Wed Nov 17 2010 - 23:44:07 PST)
- Re: [AMBER] Truncated Octahedron Box in Amber9 Alexander Metz (Thu Nov 18 2010 - 00:53:50 PST)
[AMBER] distance restraint, recenter Nadine Utz (Thu Nov 18 2010 - 05:35:29 PST)
- Re: [AMBER] distance restraint, recenter case (Thu Nov 18 2010 - 06:04:30 PST)
  - Re: [AMBER] distance restraint, recenter Niel Henriksen (Thu Nov 18 2010 - 06:51:47 PST)
[AMBER] xray_interface.f verified to work with PGI7.1-1 Rathbone, Dan L (Thu Nov 18 2010 - 06:52:51 PST)
- Re: [AMBER] xray_interface.f verified to work with PGI7.1-1 case (Thu Nov 18 2010 - 07:36:16 PST)
  - [AMBER] Thanks - xray_interface.f verified to work with PGI7.1-1 Rathbone, Dan L (Thu Nov 18 2010 - 09:04:39 PST)
[AMBER] MMPBSA.py patch failed bin wang (Thu Nov 18 2010 - 07:38:19 PST)
- Re: [AMBER] MMPBSA.py patch failed Jason Swails (Thu Nov 18 2010 - 08:33:16 PST)
  - Re: [AMBER] MMPBSA.py patch failed bin wang (Thu Nov 18 2010 - 13:08:32 PST)
[AMBER] non-bonding parameters Eliac Brown (Thu Nov 18 2010 - 12:32:15 PST)
- Re: [AMBER] non-bonding parameters Jason Swails (Thu Nov 18 2010 - 14:09:41 PST)
  - Re: [AMBER] non-bonding parameters Eliac Brown (Fri Nov 19 2010 - 05:59:32 PST)
    - [AMBER] freezing bonds in parallel version Stefano Pieraccini (Fri Nov 19 2010 - 06:57:23 PST)
    - Re: [AMBER] freezing bonds in parallel version case (Mon Nov 22 2010 - 08:30:20 PST)
    - Re: [AMBER] non-bonding parameters Jason Swails (Fri Nov 19 2010 - 07:02:21 PST)
- Re: [AMBER] non-bonding parameters Bill Ross (Fri Nov 19 2010 - 09:49:15 PST)
  - Re: [AMBER] non-bonding parameters Eliac Brown (Fri Nov 19 2010 - 16:09:03 PST)
    - Re: [AMBER] non-bonding parameters Eliac Brown (Fri Nov 19 2010 - 16:24:44 PST)
- Re: [AMBER] non-bonding parameters Bill Ross (Fri Nov 19 2010 - 16:32:33 PST)
  - Re: [AMBER] non-bonding parameters Jason Swails (Fri Nov 19 2010 - 17:03:38 PST)
[AMBER] The problems with constant pH cwt (Thu Nov 18 2010 - 23:36:47 PST)
- Re: [AMBER] The problems with constant pH Jason Swails (Fri Nov 19 2010 - 07:13:50 PST)
[AMBER] nmode problem with mm-pbsa.pl Khaled Barakat (Fri Nov 19 2010 - 18:05:04 PST)
- Re: [AMBER] nmode problem with mm-pbsa.pl case (Sun Nov 21 2010 - 05:20:39 PST)
[AMBER] AMBER, tanya singh has invited you to open a Gmail account tanya singh (Sat Nov 20 2010 - 04:32:23 PST)
[AMBER] regarding hierarchical clustering jani vinod (Mon Nov 22 2010 - 00:22:02 PST)
- Re: [AMBER] regarding hierarchical clustering Jianyin Shao (Mon Nov 22 2010 - 11:56:34 PST)
  - Re: [AMBER] regarding hierarchical clustering jani vinod (Tue Nov 23 2010 - 21:05:05 PST)
[AMBER] Difference of internal energy Kshatresh Dutta Dubey (Mon Nov 22 2010 - 06:06:30 PST)
- Re: [AMBER] Difference of internal energy Jason Swails (Mon Nov 22 2010 - 06:33:41 PST)
[AMBER] average structure aneesh cna (Mon Nov 22 2010 - 08:31:11 PST)
- Re: [AMBER] average structure Carlos Simmerling (Mon Nov 22 2010 - 08:41:00 PST)
[AMBER] nmode: dihedral angle error Michael Petersen (Mon Nov 22 2010 - 10:53:08 PST)
- Re: [AMBER] nmode: dihedral angle error case (Fri Nov 26 2010 - 06:46:12 PST)
[AMBER] ptraj and ambpdb problem in Amber Tools 1.4 Michael F. Bruist (Mon Nov 22 2010 - 11:16:09 PST)
- Re: [AMBER] ptraj and ambpdb problem in Amber Tools 1.4 Thomas Cheatham III (Mon Nov 22 2010 - 11:34:20 PST)
[AMBER] binding free energy by MM_PBSA Shuang Ding (Mon Nov 22 2010 - 13:02:33 PST)
- Re: [AMBER] binding free energy by MM_PBSA Carlos Simmerling (Mon Nov 22 2010 - 13:16:22 PST)
[AMBER] SASA and Molecular Volume Hopkins, Robert (Mon Nov 22 2010 - 14:35:47 PST)
Re: [AMBER] Can we run sanders on GPU ? setyanto md (Mon Nov 22 2010 - 19:25:44 PST)
- Re: [AMBER] Can we run sanders on GPU ? Jason Swails (Tue Nov 23 2010 - 05:52:11 PST)
  - Re: [AMBER] Can we run sanders on GPU ? setyanto md (Thu Nov 25 2010 - 07:06:22 PST)
[AMBER] To continue the job-Reg....... parasu raman (Mon Nov 22 2010 - 22:18:09 PST)
- Re: [AMBER] To continue the job-Reg....... Mark Williamson (Tue Nov 23 2010 - 05:17:28 PST)
Re: [AMBER] Trajectory John S (Mon Nov 22 2010 - 22:27:12 PST)
- Re: [AMBER] Trajectory Carlos Simmerling (Tue Nov 23 2010 - 05:43:26 PST)
  - Re: [AMBER] Trajectory John S (Tue Nov 23 2010 - 11:18:40 PST)
    - Re: [AMBER] Trajectory Thomas Cheatham III (Tue Nov 23 2010 - 13:40:21 PST)
    - Re: [AMBER] Trajectory John S (Tue Nov 23 2010 - 15:04:31 PST)
    - Re: [AMBER] Trajectory Carlos Simmerling (Tue Nov 23 2010 - 15:42:49 PST)
    - Re: [AMBER] Trajectory John S (Tue Nov 23 2010 - 18:13:15 PST)
    - Re: [AMBER] Trajectory Carlos Simmerling (Wed Nov 24 2010 - 03:22:18 PST)
[AMBER] does the "set UNIT box { X Y Z }" command create a periodic box? Jose Borreguero (Tue Nov 23 2010 - 07:09:09 PST)
- Re: [AMBER] does the "set UNIT box { X Y Z }" command create a periodic box? case (Tue Nov 23 2010 - 07:25:31 PST)
  - Re: [AMBER] does the "set UNIT box { X Y Z }" command create a periodic box? Jose Borreguero (Tue Nov 23 2010 - 07:27:40 PST)
  - [AMBER] Any Force field parameters for Zn, Mg and Mn in AMBER? Catein Catherine (Tue Nov 23 2010 - 07:56:31 PST)
[AMBER] REMD replicas blowing up Janzsó Gábor (Tue Nov 23 2010 - 07:21:08 PST)
- Re: [AMBER] REMD replicas blowing up Carlos Simmerling (Tue Nov 23 2010 - 09:10:58 PST)
  - Re: [AMBER] REMD replicas blowing up Janzsó Gábor (Tue Nov 23 2010 - 10:07:30 PST)
    - Re: [AMBER] REMD replicas blowing up Carlos Simmerling (Tue Nov 23 2010 - 16:09:49 PST)
    - Re: [AMBER] REMD replicas blowing up Janzsó Gábor (Mon Nov 29 2010 - 11:19:16 PST)
    - Re: [AMBER] REMD replicas blowing up Carlos Simmerling (Tue Nov 30 2010 - 05:59:03 PST)
    - Re: [AMBER] REMD replicas blowing up Adrian Roitberg (Tue Nov 30 2010 - 06:04:31 PST)
[AMBER] small organic molecule Rossella Noschese (Tue Nov 23 2010 - 07:36:36 PST)
- Re: [AMBER] small organic molecule case (Tue Nov 23 2010 - 10:34:41 PST)
[AMBER] Parameterization of ffamber99sb for octane box YUVRAJ UBOVEJA (Tue Nov 23 2010 - 11:09:06 PST)
[AMBER] lib and frcmod files for sucrose? Jose Borreguero (Tue Nov 23 2010 - 14:56:53 PST)
- Re: [AMBER] lib and frcmod files for sucrose? Lachele Foley (Lists) (Tue Nov 23 2010 - 17:07:37 PST)
  - Re: [AMBER] lib and frcmod files for sucrose? Jose Borreguero (Tue Nov 23 2010 - 17:27:41 PST)
    - Re: [AMBER] lib and frcmod files for sucrose? Lachele Foley (Lists) (Tue Nov 23 2010 - 17:48:18 PST)
    - Re: [AMBER] lib and frcmod files for sucrose? Jose Borreguero (Tue Nov 23 2010 - 18:20:40 PST)
[AMBER] MMPBSA John S (Tue Nov 23 2010 - 20:26:22 PST)
- Re: [AMBER] MMPBSA Jason Swails (Tue Nov 23 2010 - 21:02:20 PST)
  - Re: [AMBER] MMPBSA Roman Osman (Tue Nov 23 2010 - 21:09:09 PST)
    - Re: [AMBER] MMPBSA John S (Wed Nov 24 2010 - 07:57:10 PST)
    - Re: [AMBER] MMPBSA Jason Swails (Wed Nov 24 2010 - 11:15:19 PST)
Re: [AMBER] Error Compiling NAB o AMBER Tools 1.2 Janusz Mordarski (Wed Nov 24 2010 - 04:49:01 PST)
- Re: [AMBER] Error Compiling NAB o AMBER Tools 1.2 case (Wed Nov 24 2010 - 09:36:48 PST)
[AMBER] Error when running MMPBSA.py bin wang (Wed Nov 24 2010 - 09:20:51 PST)
- Re: [AMBER] Error when running MMPBSA.py Bill Miller III (Wed Nov 24 2010 - 11:09:12 PST)
[AMBER] Excluded atoms list Jason S Grosch (Wed Nov 24 2010 - 14:41:57 PST)
- Re: [AMBER] Excluded atoms list Bill Ross (Wed Nov 24 2010 - 14:56:12 PST)
- Re: [AMBER] Excluded atoms list Ross Walker (Wed Nov 24 2010 - 16:24:57 PST)
[AMBER] I can unzip Amber 9 in Linux Ubuntu. But when i follow the install instruction g95 i have some problems Tiefeng Peng (Wed Nov 24 2010 - 16:16:58 PST)
- Re: [AMBER] I can unzip Amber 9 in Linux Ubuntu. But when i follow the install instruction g95 i have some problems Tiefeng Peng (Wed Nov 24 2010 - 16:56:22 PST)
  - Re: [AMBER] I can unzip Amber 9 in Linux Ubuntu. But when i follow the install instruction g95 i have some problems case (Thu Nov 25 2010 - 05:15:29 PST)
    - Re: [AMBER] I can unzip Amber 9 in Linux Ubuntu. But when i follow the install instruction g95 i have some problems Tiefeng Peng (Thu Nov 25 2010 - 16:16:05 PST)
    - Re: [AMBER] I can unzip Amber 9 in Linux Ubuntu. But when i follow the install instruction g95 i have some problems case (Thu Nov 25 2010 - 19:43:21 PST)
[AMBER] solute in TIP4P box Aiko Matsumoto (Wed Nov 24 2010 - 16:20:19 PST)
[AMBER] vlimit exceeded for step Coordinate resetting (SHAKE) cannot be accomplished, deviation is too large sunita gupta (Wed Nov 24 2010 - 22:06:38 PST)
- Re: [AMBER] vlimit exceeded for step Coordinate resetting (SHAKE) cannot be accomplished, deviation is too large case (Fri Nov 26 2010 - 06:31:47 PST)
[AMBER] Leap adding an extra incorrect hydrogen Almus (Thu Nov 25 2010 - 06:49:03 PST)
- Re: [AMBER] Leap adding an extra incorrect hydrogen Jason Swails (Thu Nov 25 2010 - 08:12:05 PST)
  - Re: [AMBER] Leap adding an extra incorrect hydrogen Almus (Fri Nov 26 2010 - 03:07:12 PST)
    - Re: [AMBER] Leap adding an extra incorrect hydrogen case (Fri Nov 26 2010 - 05:29:21 PST)
[AMBER] where to check output restraint-wt (ntr=1) decleared with restraintmask xueqin pang (Thu Nov 25 2010 - 06:52:18 PST)
- Re: [AMBER] where to check output restraint-wt (ntr=1) decleared with restraintmask Jason Swails (Thu Nov 25 2010 - 07:54:57 PST)
- Re: [AMBER] where to check output restraint-wt (ntr=1) decleared with restraintmask xueqin pang (Fri Nov 26 2010 - 00:41:42 PST)
  - Re: [AMBER] where to check output restraint-wt (ntr=1) decleared with restraintmask case (Fri Nov 26 2010 - 05:38:55 PST)
[AMBER] sander: Cannot match namelist object name scee Andre Serobian (Thu Nov 25 2010 - 18:34:00 PST)
- Re: [AMBER] sander: Cannot match namelist object name scee Scott Brozell (Thu Nov 25 2010 - 19:11:26 PST)
[AMBER] solute in TIP4P box Aiko Matsumoto (Fri Nov 26 2010 - 03:26:28 PST)
- Re: [AMBER] solute in TIP4P box case (Fri Nov 26 2010 - 05:32:53 PST)
[AMBER] Could not read velocities from amin.crd Ashutosh Shandilya (Fri Nov 26 2010 - 22:50:13 PST)
- Re: [AMBER] Could not read velocities from amin.crd case (Sat Nov 27 2010 - 05:16:16 PST)
  - Re: [AMBER] Could not read velocities from amin.crd case (Sat Nov 27 2010 - 06:48:52 PST)
- Re: [AMBER] Could not read velocities from amin.crd Bill Ross (Sat Nov 27 2010 - 13:34:12 PST)
[AMBER] force field searching Eliac Brown (Sat Nov 27 2010 - 17:02:12 PST)
- Re: [AMBER] force field searching case (Sat Nov 27 2010 - 19:03:56 PST)
[AMBER] Monte Carlo Alok Juneja (Mon Nov 29 2010 - 12:52:51 PST)
- Re: [AMBER] Monte Carlo case (Mon Nov 29 2010 - 19:21:23 PST)
[AMBER] problem with TMD Su Qiu (Tue Nov 30 2010 - 01:22:59 PST)
[AMBER] Benzene Stacking in AMBER Eliac Brown (Tue Nov 30 2010 - 09:04:33 PST)
- Re: [AMBER] Benzene Stacking in AMBER Adrian Roitberg (Tue Nov 30 2010 - 09:12:53 PST)
  - Re: [AMBER] Benzene Stacking in AMBER Eliac Brown (Tue Nov 30 2010 - 09:17:41 PST)
    - Re: [AMBER] Benzene Stacking in AMBER Adrian Roitberg (Tue Nov 30 2010 - 09:21:35 PST)
    - Re: [AMBER] Benzene Stacking in AMBER Ross Walker (Tue Nov 30 2010 - 17:55:47 PST)
    - Re: [AMBER] Benzene Stacking in AMBER Thomas Cheatham (Tue Nov 30 2010 - 18:00:54 PST)
[AMBER] (no subject) Nilmeier, Jerome P. (Tue Nov 30 2010 - 14:35:29 PST)
- Re: [AMBER] (no subject) Bill Ross (Sat Nov 06 2010 - 19:15:41 PDT)
Re: [AMBER] GLYCAM with FF99SB Emmanuel Baribefe Naziga (Tue Nov 30 2010 - 18:06:21 PST)
- Re: [AMBER] GLYCAM with FF99SB Lachele Foley (Lists) (Tue Nov 30 2010 - 19:31:41 PST)
Re: [AMBER] top and crd-reg.............. Ross Walker (Tue Nov 30 2010 - 20:20:35 PST)

Amber Archive Nov 2010 by thread